| Clone Name | rbags38c23 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT016790.1| Zea mays clone Contig623 mRNA sequence Length = 2016 Score = 242 bits (122), Expect = 1e-60 Identities = 263/310 (84%) Strand = Plus / Minus Query: 375 gggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctgt 434 |||| |||||| || ||||| || || || ||||||||||||||||| || | |||||| Sbjct: 1768 gggttcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgt 1709 Query: 435 cgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctgt 494 ||||||||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||| Sbjct: 1708 cgcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctgt 1649 Query: 495 ttctcctgcaaatcctcctgacttatgtcacccctgttagccttgttgatctgctgaaca 554 | || ||||| || ||||| ||||| ||||| ||||| |||||||||||||| | |||| Sbjct: 1648 ctttcttgcaattcgtcctggcttatttcacctctgttggccttgttgatctgttcaaca 1589 Query: 555 cacctccttatgccatcaagcagttcctggttattagggtcaagctttaacccagcctgg 614 |||||| | | |||||||||||||||||||| || |||||| |||| || ||||||||| Sbjct: 1588 cacctcttaacaccatcaagcagttcctggttgttcgggtcatgcttcaagccagcctgg 1529 Query: 615 taagtttccattgccttctcatattccttcataaaaaactgaactgcacccttccttgta 674 || ||||||| ||||| |||||||| ||||| || ||||||| |||||| ||||| ||| Sbjct: 1528 taggtttccacggccttgtcatattctttcatgaagaactgaattgcacctttcctcgta 1469 Query: 675 taccctttgg 684 |||||||||| Sbjct: 1468 taccctttgg 1459
>ref|XM_467013.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2113 Score = 234 bits (118), Expect = 3e-58 Identities = 307/370 (82%) Strand = Plus / Minus Query: 319 atctcgtttggactattccagcgtttatgagcttttggatcttctgtgccactccagggt 378 ||||| |||| |||||||||||| ||| ||||| || |||||||| ||||||||||| Sbjct: 1854 atctcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggt 1795 Query: 379 ccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctgtcgca 438 ||| ||||| ||||||| |||||||||||||||||| ||||| | || |||||||||| Sbjct: 1794 tcttaagatgctcctgagaagccctagggttctcctgcaaatcgaccagtacctgtcgca 1735 Query: 439 tgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctgtttct 498 |||| ||||| ||||| || |||||||| ||||| ||||||||||| || ||||| | Sbjct: 1734 tgatgggatctgtaagaatattctggatctctggatcctgcatagccttgttctgtcgtt 1675 Query: 499 cctgcaaatcctcctgacttatgtcacccctgttagccttgttgatctgctgaacacacc 558 |||| | || |||||| | | ||||||||||| |||||||||||||| | | ||||| Sbjct: 1674 cctgaatctcttcctgagtcaaatcacccctgttggccttgttgatctgttcgatacacc 1615 Query: 559 tccttatgccatcaagcagttcctggttattagggtcaagctttaacccagcctggtaag 618 | | | || || ||||||||| ||||||| || ||| |||| || || |||||||||| Sbjct: 1614 ttttcacaccgtccagcagttccgggttattcggatcatgcttcaaaccggcctggtaag 1555 Query: 619 tttccattgccttctcatattccttcataaaaaactgaactgcacccttccttgtatacc 678 ||||||||||||| |||||||| ||||| |||||||||| |||||| ||||||||||||| Sbjct: 1554 tttccattgccttgtcatattctttcatgaaaaactgaattgcacctttccttgtatacc 1495 Query: 679 ctttggagaa 688 |||||||||| Sbjct: 1494 ctttggagaa 1485
>gb|AY104944.1| Zea mays PCO123267 mRNA sequence Length = 1713 Score = 232 bits (117), Expect = 1e-57 Identities = 306/369 (82%) Strand = Plus / Minus Query: 314 tgatcatctcgtttggactattccagcgtttatgagcttttggatcttctgtgccactcc 373 |||||||||| |||||||||| ||||| ||| ||||| || ||||| || ||||| Sbjct: 1399 tgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactcc 1340 Query: 374 agggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctg 433 ||||| |||||| || ||||| || ||||| ||||||||||||||||| | | |||||| Sbjct: 1339 agggttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctg 1280 Query: 434 tcgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctg 493 || ||||||||| |||||||| ||||||||||| |||||||| ||||||||||| |||| Sbjct: 1279 tctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagctttgttctg 1220 Query: 494 tttctcctgcaaatcctcctgacttatgtcacccctgttagccttgttgatctgctgaac 553 | | || ||||| || ||||||||||| ||||| |||||||||||||| || || | || Sbjct: 1219 tctttcttgcaattcgtcctgacttatttcacctctgttagccttgttaatttgttcaat 1160 Query: 554 acacctccttatgccatcaagcagttcctggttattagggtcaagctttaacccagcctg 613 |||||||| | |||||||||||||||||||| || |||||| |||| | |||||||| Sbjct: 1159 gcacctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctg 1100 Query: 614 gtaagtttccattgccttctcatattccttcataaaaaactgaactgcacccttccttgt 673 || |||||||| ||||| |||||||| ||||| || || |||| |||||| |||||||| Sbjct: 1099 ataggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgt 1040 Query: 674 atacccttt 682 |||||||| Sbjct: 1039 gtacccttt 1031
>dbj|AK102431.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093H17, full insert sequence Length = 2113 Score = 226 bits (114), Expect = 8e-56 Identities = 306/370 (82%) Strand = Plus / Minus Query: 319 atctcgtttggactattccagcgtttatgagcttttggatcttctgtgccactccagggt 378 ||||| |||| |||||||||||| ||| ||||| || |||||||| ||||||||||| Sbjct: 1854 atctcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggt 1795 Query: 379 ccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctgtcgca 438 ||| ||||| ||||||| |||||||||||||||||| ||||| | || |||||||||| Sbjct: 1794 tcttaagatgctcctgagaagccctagggttctcctgcaaatcgaccagtacctgtcgca 1735 Query: 439 tgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctgtttct 498 |||| ||||| ||||| || |||||||| ||||| ||||||||||| || ||||| | Sbjct: 1734 tgatgggatctgtaagaatattctggatctctggatcctgcatagccttgttctgtcgtt 1675 Query: 499 cctgcaaatcctcctgacttatgtcacccctgttagccttgttgatctgctgaacacacc 558 |||| | || |||||| | | ||||||||||| |||||||||||||| | | ||||| Sbjct: 1674 cctgaatctcttcctgagtcaaatcacccctgttggccttgttgatctgttcgatacacc 1615 Query: 559 tccttatgccatcaagcagttcctggttattagggtcaagctttaacccagcctggtaag 618 | | | || || ||||||||| ||||||| || || |||| || || |||||||||| Sbjct: 1614 ttttcacaccgtccagcagttccgggttattcggaccatgcttcaaaccggcctggtaag 1555 Query: 619 tttccattgccttctcatattccttcataaaaaactgaactgcacccttccttgtatacc 678 ||||||||||||| |||||||| ||||| |||||||||| |||||| ||||||||||||| Sbjct: 1554 tttccattgccttgtcatattctttcatgaaaaactgaattgcacctttccttgtatacc 1495 Query: 679 ctttggagaa 688 |||||||||| Sbjct: 1494 ctttggagaa 1485
>gb|BT016545.1| Zea mays clone Contig378 mRNA sequence Length = 1331 Score = 224 bits (113), Expect = 3e-55 Identities = 305/369 (82%) Strand = Plus / Minus Query: 314 tgatcatctcgtttggactattccagcgtttatgagcttttggatcttctgtgccactcc 373 |||||||||| |||||||||| ||||| ||| ||||| || ||||| || ||||| Sbjct: 1012 tgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactcc 953 Query: 374 agggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctg 433 ||||| |||||| || ||||| || ||||| ||||||||||||||||| | | |||||| Sbjct: 952 agggttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctg 893 Query: 434 tcgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagctttactctg 493 || ||||||||| |||||||| ||||||||||| |||||||| ||||||||||| |||| Sbjct: 892 tctcatgatagggtcggtaagaatgttctggatctctgggtcttgcatagcttttttctg 833 Query: 494 tttctcctgcaaatcctcctgacttatgtcacccctgttagccttgttgatctgctgaac 553 | | || |||| || ||||||||||| ||||| |||||||||||||| || || | || Sbjct: 832 tctttcttgcatttcatcctgacttatttcacctctgttagccttgttaatttgttcaat 773 Query: 554 acacctccttatgccatcaagcagttcctggttattagggtcaagctttaacccagcctg 613 |||||||| | |||||||||||||||||||| || |||||| |||| | |||||||| Sbjct: 772 gcacctcctaacaccatcaagcagttcctggtttttcgggtcatgcttcaggccagcctg 713 Query: 614 gtaagtttccattgccttctcatattccttcataaaaaactgaactgcacccttccttgt 673 || |||||||| ||||| |||||||| ||||| || || |||| |||||| |||||||| Sbjct: 712 ataggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttccttgt 653 Query: 674 atacccttt 682 |||||||| Sbjct: 652 gtacccttt 644
>dbj|AK108550.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-144-E04, full insert sequence Length = 1963 Score = 184 bits (93), Expect = 3e-43 Identities = 279/341 (81%) Strand = Plus / Minus Query: 348 agcttttggatcttctgtgccactccagggtccttcagatgatcctgagcagccctaggg 407 ||||| ||||||||||| |||||| |||| ||| ||||| ||||||||||| | || Sbjct: 1793 agcttctggatcttctgcatcactccggggttcttgagatgcgcctgagcagccttcgga 1734 Query: 408 ttctcctggaaatccatcaacacctgtcgcatgataggatcggtaaggatgttctggatt 467 ||||||||||| || |||||||||| ||||||||||||| | || |||||||||||| Sbjct: 1733 ttctcctggaagtcggtcaacacctgctgcatgataggatccttcagaatgttctggatt 1674 Query: 468 tctgggtcctgcatagctttactctgtttctcctgcaaatcctcctgacttatgtcaccc 527 ||||||||||||||||| || ||||| | || ||||| |||||||| || | || || Sbjct: 1673 tctgggtcctgcatagccttgttctgtctttcttgcaattcctcctggctcagttcccct 1614 Query: 528 ctgttagccttgttgatctgctgaacacacctccttatgccatcaagcagttcctggtta 587 ||| |||||||||||||| |||| ||||| ||||| | |||||||||| |||||||| Sbjct: 1613 ctgctagccttgttgatccgctggacacatctcctaacaccatcaagcaactcctggttg 1554 Query: 588 ttagggtcaagctttaacccagcctggtaagtttccattgccttctcatattccttcata 647 || |||||| ||||||| || ||||| || ||||||| ||| || |||||||| ||||| Sbjct: 1553 ttcgggtcatgctttaagccggcctgataggtttccagtgctttgtcatattctttcatg 1494 Query: 648 aaaaactgaactgcacccttccttgtataccctttggagaa 688 ||||| || | |||||| |||||||| || || |||||||| Sbjct: 1493 aaaaattggattgcacctttccttgtgtatcccttggagaa 1453
>ref|XM_473336.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2241 Score = 176 bits (89), Expect = 6e-41 Identities = 278/341 (81%) Strand = Plus / Minus Query: 348 agcttttggatcttctgtgccactccagggtccttcagatgatcctgagcagccctaggg 407 ||||| ||||||||||| |||||| |||| ||| ||||| ||||||||||| | || Sbjct: 2228 agcttctggatcttctgcatcactccggggttcttgagatgcgcctgagcagccttcgga 2169 Query: 408 ttctcctggaaatccatcaacacctgtcgcatgataggatcggtaaggatgttctggatt 467 ||||||||||| || |||||||||| ||||||||||||| | || |||||||||||| Sbjct: 2168 ttctcctggaagtcggtcaacacctgctgcatgataggatccttcagaatgttctggatt 2109 Query: 468 tctgggtcctgcatagctttactctgtttctcctgcaaatcctcctgacttatgtcaccc 527 ||||||||||||||||| || ||||| | || ||||| |||||||| || | || || Sbjct: 2108 tctgggtcctgcatagccttgttctgtctttcttgcaattcctcctggctcagttcccct 2049 Query: 528 ctgttagccttgttgatctgctgaacacacctccttatgccatcaagcagttcctggtta 587 ||| |||||||||||||| |||| ||||| ||||| | |||||||||| |||||||| Sbjct: 2048 ctgctagccttgttgatccgctggacacatctcctaacaccatcaagcaactcctggttg 1989 Query: 588 ttagggtcaagctttaacccagcctggtaagtttccattgccttctcatattccttcata 647 || |||||| |||||| || ||||| || ||||||| ||| || |||||||| ||||| Sbjct: 1988 ttcgggtcatgctttaggccggcctgataggtttccagtgctttgtcatattctttcatg 1929 Query: 648 aaaaactgaactgcacccttccttgtataccctttggagaa 688 ||||| || | |||||| |||||||| || || |||||||| Sbjct: 1928 aaaaattggattgcacctttccttgtgtatcccttggagaa 1888
>gb|AY107480.1| Zea mays PCO126634 mRNA sequence Length = 1070 Score = 151 bits (76), Expect = 4e-33 Identities = 287/358 (80%) Strand = Plus / Minus Query: 347 gagcttttggatcttctgtgccactccagggtccttcagatgatcctgagcagccctagg 406 |||||| ||||||||||| |||||| |||| ||| || || |||| ||||||| ||| Sbjct: 853 gagcttctggatcttctgcatcactccggggttcttgaggtgcgcctgcgcagcccgagg 794 Query: 407 gttctcctggaaatccatcaacacctgtcgcatgataggatcggtaaggatgttctggat 466 ||||||||| | |||| |||| ||||| ||||||| ||||| || |||||||||||||| Sbjct: 793 gttctcctgcagatccgtcaaaacctgctgcatgatcggatcagtcaggatgttctggat 734 Query: 467 ttctgggtcctgcatagctttactctgtttctcctgcaaatcctcctgacttatgtcacc 526 || ||||| ||||| ||||| ||||| |||| | || ||||||| ||| | || || Sbjct: 733 ctcagggtcttgcatggctttgttctgtctctctttcagttcctcctcactgagttcgcc 674 Query: 527 cctgttagccttgttgatctgctgaacacacctccttatgccatcaagcagttcctggtt 586 ||| | |||||||||||||| | |||||||||||||| |||||||| | |||||||| Sbjct: 673 tctgctcgccttgttgatctgttcaacacacctccttacaccatcaagtaactcctggtt 614 Query: 587 attagggtcaagctttaacccagcctggtaagtttccattgccttctcatattccttcat 646 || |||||| |||||| ||||| || |||||||||| || || |||||||| ||||| Sbjct: 613 tttcgggtcatgctttaggccagcttgataagtttccagcgctttgtcatattctttcat 554 Query: 647 aaaaaactgaactgcacccttccttgtataccctttggagaangntgggtctagctca 704 |||||||| | ||||| |||||||| || || |||||||| | || ||||||||| Sbjct: 553 gaaaaactggatagcacctttccttgtgtatcccttggagaatgtgggatctagctca 496
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 135 bits (68), Expect = 2e-28 Identities = 104/116 (89%) Strand = Plus / Minus Query: 573 agcagttcctggttattagggtcaagctttaacccagcctggtaagtttccattgccttc 632 ||||||||| ||||||| || ||| |||| || || ||||||||||||||||||||||| Sbjct: 25917475 agcagttccgggttattcggatcatgcttcaaaccggcctggtaagtttccattgccttg 25917416 Query: 633 tcatattccttcataaaaaactgaactgcacccttccttgtataccctttggagaa 688 |||||||| ||||| |||||||||| |||||| ||||||||||||||||||||||| Sbjct: 25917415 tcatattctttcatgaaaaactgaattgcacctttccttgtataccctttggagaa 25917360 Score = 85.7 bits (43), Expect = 2e-13 Identities = 88/103 (85%) Strand = Plus / Minus Query: 319 atctcgtttggactattccagcgtttatgagcttttggatcttctgtgccactccagggt 378 ||||| |||| |||||||||||| ||| ||||| || |||||||| ||||||||||| Sbjct: 25918106 atctcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggt 25918047 Query: 379 ccttcagatgatcctgagcagccctagggttctcctggaaatc 421 ||| ||||| ||||||| |||||||||||||||||| ||||| Sbjct: 25918046 tcttaagatgctcctgagaagccctagggttctcctgcaaatc 25918004 Score = 63.9 bits (32), Expect = 7e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 429 acctgtcgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagc 484 |||||||||||||| ||||| ||||| || |||||||| ||||| ||||||||||| Sbjct: 25917891 acctgtcgcatgatgggatctgtaagaatattctggatctctggatcctgcatagc 25917836 Score = 44.1 bits (22), Expect = 0.62 Identities = 25/26 (96%) Strand = Plus / Minus Query: 522 tcacccctgttagccttgttgatctg 547 ||||||||||| |||||||||||||| Sbjct: 25917709 tcacccctgttggccttgttgatctg 25917684
>dbj|AP005291.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1282_H11 Length = 143314 Score = 135 bits (68), Expect = 2e-28 Identities = 104/116 (89%) Strand = Plus / Minus Query: 573 agcagttcctggttattagggtcaagctttaacccagcctggtaagtttccattgccttc 632 ||||||||| ||||||| || ||| |||| || || ||||||||||||||||||||||| Sbjct: 68816 agcagttccgggttattcggatcatgcttcaaaccggcctggtaagtttccattgccttg 68757 Query: 633 tcatattccttcataaaaaactgaactgcacccttccttgtataccctttggagaa 688 |||||||| ||||| |||||||||| |||||| ||||||||||||||||||||||| Sbjct: 68756 tcatattctttcatgaaaaactgaattgcacctttccttgtataccctttggagaa 68701 Score = 85.7 bits (43), Expect = 2e-13 Identities = 88/103 (85%) Strand = Plus / Minus Query: 319 atctcgtttggactattccagcgtttatgagcttttggatcttctgtgccactccagggt 378 ||||| |||| |||||||||||| ||| ||||| || |||||||| ||||||||||| Sbjct: 69447 atctcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggt 69388 Query: 379 ccttcagatgatcctgagcagccctagggttctcctggaaatc 421 ||| ||||| ||||||| |||||||||||||||||| ||||| Sbjct: 69387 tcttaagatgctcctgagaagccctagggttctcctgcaaatc 69345 Score = 63.9 bits (32), Expect = 7e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 429 acctgtcgcatgataggatcggtaaggatgttctggatttctgggtcctgcatagc 484 |||||||||||||| ||||| ||||| || |||||||| ||||| ||||||||||| Sbjct: 69232 acctgtcgcatgatgggatctgtaagaatattctggatctctggatcctgcatagc 69177 Score = 44.1 bits (22), Expect = 0.62 Identities = 25/26 (96%) Strand = Plus / Minus Query: 522 tcacccctgttagccttgttgatctg 547 ||||||||||| |||||||||||||| Sbjct: 69050 tcacccctgttggccttgttgatctg 69025
>dbj|AK059659.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-D09, full insert sequence Length = 418 Score = 99.6 bits (50), Expect = 1e-17 Identities = 110/130 (84%) Strand = Plus / Minus Query: 319 atctcgtttggactattccagcgtttatgagcttttggatcttctgtgccactccagggt 378 ||||| |||| |||||||||||| ||| ||||| || |||||||| ||||||||||| Sbjct: 139 atctcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggt 80 Query: 379 ccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctgtcgca 438 ||| ||||| ||||||| |||||||||||||||||| ||||| | || |||||||||| Sbjct: 79 tcttaagatgctcctgagaagccctagggttctcctgcaaatcgaccagtacctgtcgca 20 Query: 439 tgataggatc 448 |||| ||||| Sbjct: 19 tgatgggatc 10
>gb|AF512999.1| Medicago sativa TPR1 (tpr1) mRNA, complete cds Length = 1264 Score = 65.9 bits (33), Expect = 2e-07 Identities = 79/95 (83%) Strand = Plus / Minus Query: 610 cctggtaagtttccattgccttctcatattccttcataaaaaactgaactgcacccttcc 669 ||||||| ||||||| ||||| |||||||| ||||| ||||||||||| |||||||||| Sbjct: 757 cctggtatgtttccaaagccttttcatattctttcatgaaaaactgaaccgcacccttcc 698 Query: 670 ttgtataccctttggagaangntgggtctagctca 704 ||||| || |||| ||| | ||||| |||||| Sbjct: 697 gggtataacccttggtgaaggtcgggtcaagctca 663
>emb|AL606459.5|OSJN00020 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0091D06, complete sequence Length = 174570 Score = 65.9 bits (33), Expect = 2e-07 Identities = 45/49 (91%) Strand = Plus / Minus Query: 436 gcatgataggatcggtaaggatgttctggatttctgggtcctgcatagc 484 ||||||||||||| | || ||||||||||||||||||||||||||||| Sbjct: 110858 gcatgataggatccttcagaatgttctggatttctgggtcctgcatagc 110810 Score = 52.0 bits (26), Expect = 0.003 Identities = 71/86 (82%) Strand = Plus / Minus Query: 348 agcttttggatcttctgtgccactccagggtccttcagatgatcctgagcagccctaggg 407 ||||| ||||||||||| |||||| |||| ||| ||||| ||||||||||| | || Sbjct: 111038 agcttctggatcttctgcatcactccggggttcttgagatgcgcctgagcagccttcgga 110979 Query: 408 ttctcctggaaatccatcaacacctg 433 ||||||||||| || |||||||||| Sbjct: 110978 ttctcctggaagtcggtcaacacctg 110953
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 65.9 bits (33), Expect = 2e-07 Identities = 45/49 (91%) Strand = Plus / Minus Query: 436 gcatgataggatcggtaaggatgttctggatttctgggtcctgcatagc 484 ||||||||||||| | || ||||||||||||||||||||||||||||| Sbjct: 26889798 gcatgataggatccttcagaatgttctggatttctgggtcctgcatagc 26889750 Score = 52.0 bits (26), Expect = 0.003 Identities = 71/86 (82%) Strand = Plus / Minus Query: 348 agcttttggatcttctgtgccactccagggtccttcagatgatcctgagcagccctaggg 407 ||||| ||||||||||| |||||| |||| ||| ||||| ||||||||||| | || Sbjct: 26889978 agcttctggatcttctgcatcactccggggttcttgagatgcgcctgagcagccttcgga 26889919 Query: 408 ttctcctggaaatccatcaacacctg 433 ||||||||||| || |||||||||| Sbjct: 26889918 ttctcctggaagtcggtcaacacctg 26889893
>ref|NM_101099.4| Arabidopsis thaliana unknown protein AT1G12270 mRNA, complete cds Length = 1949 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 429 acctgtcgcatgataggatcggtaaggatgttctggatttctgggtcctgcat 481 ||||||| ||| | |||||| || ||||||||||||||||||||||| ||||| Sbjct: 1637 acctgtctcattacaggatctgtgaggatgttctggatttctgggtcttgcat 1585
>gb|BT000651.1| Arabidopsis thaliana At1g12270/F5O11_1 mRNA, complete cds Length = 1719 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 429 acctgtcgcatgataggatcggtaaggatgttctggatttctgggtcctgcat 481 ||||||| ||| | |||||| || ||||||||||||||||||||||| ||||| Sbjct: 1607 acctgtctcattacaggatctgtgaggatgttctggatttctgggtcttgcat 1555
>emb|AJ319538.1|ATH319538 Arabidopsis thaliana partial mRNA for stil-like (stil gene) Length = 720 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 429 acctgtcgcatgataggatcggtaaggatgttctggatttctgggtcctgcat 481 ||||||| ||| | |||||| || ||||||||||||||||||||||| ||||| Sbjct: 387 acctgtctcattacaggatctgtgaggatgttctggatttctgggtcttgcat 335
>gb|AY064967.1| Arabidopsis thaliana At1g12270/F5O11_1 mRNA, complete cds Length = 1943 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 429 acctgtcgcatgataggatcggtaaggatgttctggatttctgggtcctgcat 481 ||||||| ||| | |||||| || ||||||||||||||||||||||| ||||| Sbjct: 1637 acctgtctcattacaggatctgtgaggatgttctggatttctgggtcttgcat 1585
>gb|AC025416.4|AC025416 Genomic sequence for Arabidopsis thaliana BAC F5O11 from chromosome I, complete sequence Length = 118374 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 429 acctgtcgcatgataggatcggtaaggatgttctggatttctgggtcctgcat 481 ||||||| ||| | |||||| || ||||||||||||||||||||||| ||||| Sbjct: 3597 acctgtctcattacaggatctgtgaggatgttctggatttctgggtcttgcat 3545
>emb|CT573076.1| Medicago truncatula chromosome 5 clone mth2-181d5, COMPLETE SEQUENCE Length = 89591 Score = 56.0 bits (28), Expect = 2e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 618 gtttccattgccttctcatattccttcataaaaaactgaactgcacccttcc 669 ||||||| ||||| |||||||| ||||| ||||||||||| |||||||||| Sbjct: 17400 gtttccaaagccttttcatattctttcatgaaaaactgaaccgcacccttcc 17349
>ref|NM_104951.2| Arabidopsis thaliana unknown protein AT1G62740 mRNA, complete cds Length = 2185 Score = 52.0 bits (26), Expect = 0.003 Identities = 80/98 (81%) Strand = Plus / Minus Query: 567 ccatcaagcagttcctggttattagggtcaagctttaacccagcctggtaagtttccatt 626 |||||||| ||||||||||||||||| ||| | | | || |||||| ||||||||| Sbjct: 1531 ccatcaagaagttcctggttattaggatcatgttcgagacccttctggtacgtttccatt 1472 Query: 627 gccttctcatattccttcataaaaaactgaactgcacc 664 || || ||||| |||||||| || ||||| |||||||| Sbjct: 1471 gcattgtcatactccttcatgaagaactggactgcacc 1434 Score = 42.1 bits (21), Expect = 2.4 Identities = 45/53 (84%) Strand = Plus / Minus Query: 429 acctgtcgcatgataggatcggtaaggatgttctggatttctgggtcctgcat 481 ||||||| ||| | |||||| || || |||||||| ||||||||||| ||||| Sbjct: 1669 acctgtctcattacaggatctgtgagaatgttctgaatttctgggtcttgcat 1617
>gb|BT015924.1| Arabidopsis thaliana At1g62740 gene, complete cds Length = 1716 Score = 52.0 bits (26), Expect = 0.003 Identities = 80/98 (81%) Strand = Plus / Minus Query: 567 ccatcaagcagttcctggttattagggtcaagctttaacccagcctggtaagtttccatt 626 |||||||| ||||||||||||||||| ||| | | | || |||||| ||||||||| Sbjct: 1466 ccatcaagaagttcctggttattaggatcatgttcgagacccttctggtacgtttccatt 1407 Query: 627 gccttctcatattccttcataaaaaactgaactgcacc 664 || || ||||| |||||||| || ||||| |||||||| Sbjct: 1406 gcattgtcatactccttcatgaagaactggactgcacc 1369 Score = 42.1 bits (21), Expect = 2.4 Identities = 45/53 (84%) Strand = Plus / Minus Query: 429 acctgtcgcatgataggatcggtaaggatgttctggatttctgggtcctgcat 481 ||||||| ||| | |||||| || || |||||||| ||||||||||| ||||| Sbjct: 1604 acctgtctcattacaggatctgtgagaatgttctgaatttctgggtcttgcat 1552
>emb|BX815512.1|CNS0ABEK Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS69ZC08 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1846 Score = 52.0 bits (26), Expect = 0.003 Identities = 80/98 (81%) Strand = Plus / Minus Query: 567 ccatcaagcagttcctggttattagggtcaagctttaacccagcctggtaagtttccatt 626 |||||||| ||||||||||||||||| ||| | | | || |||||| ||||||||| Sbjct: 1513 ccatcaagaagttcctggttattaggatcatgttcgagacccttctggtacgtttccatt 1454 Query: 627 gccttctcatattccttcataaaaaactgaactgcacc 664 || || ||||| |||||||| || ||||| |||||||| Sbjct: 1453 gcattgtcatactccttcatgaagaactggactgcacc 1416 Score = 42.1 bits (21), Expect = 2.4 Identities = 45/53 (84%) Strand = Plus / Minus Query: 429 acctgtcgcatgataggatcggtaaggatgttctggatttctgggtcctgcat 481 ||||||| ||| | |||||| || || |||||||| ||||||||||| ||||| Sbjct: 1651 acctgtctcattacaggatctgtgagaatgttctgaatttctgggtcttgcat 1599
>emb|BX817089.1|CNS0AAH9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH85ZA09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1858 Score = 52.0 bits (26), Expect = 0.003 Identities = 80/98 (81%) Strand = Plus / Minus Query: 567 ccatcaagcagttcctggttattagggtcaagctttaacccagcctggtaagtttccatt 626 |||||||| ||||||||||||||||| ||| | | | || |||||| ||||||||| Sbjct: 1525 ccatcaagaagttcctggttattaggatcatgttcgagacccttctggtacgtttccatt 1466 Query: 627 gccttctcatattccttcataaaaaactgaactgcacc 664 || || ||||| |||||||| || ||||| |||||||| Sbjct: 1465 gcattgtcatactccttcatgaagaactggactgcacc 1428 Score = 42.1 bits (21), Expect = 2.4 Identities = 45/53 (84%) Strand = Plus / Minus Query: 429 acctgtcgcatgataggatcggtaaggatgttctggatttctgggtcctgcat 481 ||||||| ||| | |||||| || || |||||||| ||||||||||| ||||| Sbjct: 1663 acctgtctcattacaggatctgtgagaatgttctgaatttctgggtcttgcat 1611
>gb|BT005735.1| Arabidopsis thaliana clone RAFL15-47-M19 (R20937) putative TPR-repeat protein (At1g62740) mRNA, complete cds Length = 1924 Score = 52.0 bits (26), Expect = 0.003 Identities = 80/98 (81%) Strand = Plus / Minus Query: 567 ccatcaagcagttcctggttattagggtcaagctttaacccagcctggtaagtttccatt 626 |||||||| ||||||||||||||||| ||| | | | || |||||| ||||||||| Sbjct: 1531 ccatcaagaagttcctggttattaggatcatgttcgagacccttctggtacgtttccatt 1472 Query: 627 gccttctcatattccttcataaaaaactgaactgcacc 664 || || ||||| |||||||| || ||||| |||||||| Sbjct: 1471 gcattgtcatactccttcatgaagaactggactgcacc 1434 Score = 42.1 bits (21), Expect = 2.4 Identities = 45/53 (84%) Strand = Plus / Minus Query: 429 acctgtcgcatgataggatcggtaaggatgttctggatttctgggtcctgcat 481 ||||||| ||| | |||||| || || |||||||| ||||||||||| ||||| Sbjct: 1669 acctgtctcattacaggatctgtgagaatgttctgaatttctgggtcttgcat 1617
>gb|AC007190.4|AC007190 Genomic sequence for Arabidopsis thaliana BAC F23N19 from chromosome I, complete sequence Length = 86801 Score = 52.0 bits (26), Expect = 0.003 Identities = 80/98 (81%) Strand = Plus / Minus Query: 567 ccatcaagcagttcctggttattagggtcaagctttaacccagcctggtaagtttccatt 626 |||||||| ||||||||||||||||| ||| | | | || |||||| ||||||||| Sbjct: 45751 ccatcaagaagttcctggttattaggatcatgttcgagacccttctggtacgtttccatt 45692 Query: 627 gccttctcatattccttcataaaaaactgaactgcacc 664 || || ||||| |||||||| || ||||| |||||||| Sbjct: 45691 gcattgtcatactccttcatgaagaactggactgcacc 45654 Score = 42.1 bits (21), Expect = 2.4 Identities = 45/53 (84%) Strand = Plus / Minus Query: 429 acctgtcgcatgataggatcggtaaggatgttctggatttctgggtcctgcat 481 ||||||| ||| | |||||| || || |||||||| ||||||||||| ||||| Sbjct: 46088 acctgtctcattacaggatctgtgagaatgttctgaatttctgggtcttgcat 46036
>dbj|AK108496.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-143-G10, full insert sequence Length = 871 Score = 52.0 bits (26), Expect = 0.003 Identities = 71/86 (82%) Strand = Plus / Minus Query: 348 agcttttggatcttctgtgccactccagggtccttcagatgatcctgagcagccctaggg 407 ||||| ||||||||||| |||||| |||| ||| ||||| ||||||||||| | || Sbjct: 94 agcttctggatcttctgcatcactccggggttcttgagatgcgcctgagcagccttcgga 35 Query: 408 ttctcctggaaatccatcaacacctg 433 ||||||||||| || |||||||||| Sbjct: 34 ttctcctggaagtcggtcaacacctg 9
>gb|BT020538.1| Arabidopsis thaliana At1g62740 gene, complete cds Length = 1795 Score = 52.0 bits (26), Expect = 0.003 Identities = 80/98 (81%) Strand = Plus / Minus Query: 567 ccatcaagcagttcctggttattagggtcaagctttaacccagcctggtaagtttccatt 626 |||||||| ||||||||||||||||| ||| | | | || |||||| ||||||||| Sbjct: 1536 ccatcaagaagttcctggttattaggatcatgttcgagacccttctggtacgtttccatt 1477 Query: 627 gccttctcatattccttcataaaaaactgaactgcacc 664 || || ||||| |||||||| || ||||| |||||||| Sbjct: 1476 gcattgtcatactccttcatgaagaactggactgcacc 1439 Score = 42.1 bits (21), Expect = 2.4 Identities = 45/53 (84%) Strand = Plus / Minus Query: 429 acctgtcgcatgataggatcggtaaggatgttctggatttctgggtcctgcat 481 ||||||| ||| | |||||| || || |||||||| ||||||||||| ||||| Sbjct: 1674 acctgtctcattacaggatctgtgagaatgttctgaatttctgggtcttgcat 1622
>emb|X79770.1|GMWSTI Glycine max gmsti mRNA Length = 1871 Score = 50.1 bits (25), Expect = 0.010 Identities = 100/125 (80%) Strand = Plus / Minus Query: 552 acacacctccttatgccatcaagcagttcctggttattagggtcaagctttaacccagcc 611 ||||| || |||||||||||||||| |||||| || ||||| ||| | || || || || Sbjct: 1535 acacatcttcttatgccatcaagcaattcctgattgttaggatcatgtttcaaaccctcc 1476 Query: 612 tggtaagtttccattgccttctcatattccttcataaaaaactgaactgcacccttcctt 671 ||| ||||||| || || |||||||| ||||| ||||||| |||||||| ||||| Sbjct: 1475 ctgtatgtttccaaagctttgtcatattctttcatggaaaactgcactgcacctttccta 1416 Query: 672 gtata 676 ||||| Sbjct: 1415 gtata 1411
>gb|AC109307.17| Mus musculus chromosome 12, clone RP24-354A15, complete sequence Length = 174616 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Minus Query: 40 gaaataaaatacaataacattc 61 |||||||||||||||||||||| Sbjct: 133355 gaaataaaatacaataacattc 133334
>gb|AC157275.2| Mus musculus BAC clone RP24-164M6 from chromosome 12, complete sequence Length = 175123 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Minus Query: 40 gaaataaaatacaataacattc 61 |||||||||||||||||||||| Sbjct: 34312 gaaataaaatacaataacattc 34291
>gb|AC096567.3| Homo sapiens BAC clone RP11-293A4 from 4, complete sequence Length = 126750 Score = 44.1 bits (22), Expect = 0.62 Identities = 25/26 (96%) Strand = Plus / Plus Query: 35 agcaagaaataaaatacaataacatt 60 |||||||||||||||| ||||||||| Sbjct: 76118 agcaagaaataaaatataataacatt 76143
>emb|AJ717959.1| Nicotiana tabacum cDNA-AFLP-fragment BSTT2-32-350, cultivar Bright Yellow 2 Length = 313 Score = 44.1 bits (22), Expect = 0.62 Identities = 83/104 (79%) Strand = Plus / Plus Query: 567 ccatcaagcagttcctggttattagggtcaagctttaacccagcctggtaagtttccatt 626 ||||| ||||||||||| || | ||| ||| |||| || || |||||||||||||||| Sbjct: 56 ccatctagcagttcctgattctgaggatcatgcttcaatccttcctggtaagtttccata 115 Query: 627 gccttctcatattccttcataaaaaactgaactgcacccttcct 670 || || || || || ||||| || || ||||| ||||| ||||| Sbjct: 116 gctttttcgtactctttcatgaanaantgaacagcacctttcct 159
>ref|XM_569243.1| Cryptococcus neoformans var. neoformans JEC21 mitochondrial import receptor subunit tom40 (CNB04190) partial mRNA Length = 1461 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 408 ttctcctggaaatccatcaac 428 ||||||||||||||||||||| Sbjct: 525 ttctcctggaaatccatcaac 545
>gb|AC023240.9| Oryza sativa chromosome 10 BAC OSJNBa0051D19 genomic sequence, complete sequence Length = 131984 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 630 ttctcatattccttcataaaa 650 ||||||||||||||||||||| Sbjct: 113842 ttctcatattccttcataaaa 113822
>gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 2, complete sequence Length = 1632307 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 408 ttctcctggaaatccatcaac 428 ||||||||||||||||||||| Sbjct: 1224704 ttctcctggaaatccatcaac 1224724
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 630 ttctcatattccttcataaaa 650 ||||||||||||||||||||| Sbjct: 18099286 ttctcatattccttcataaaa 18099306
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 630 ttctcatattccttcataaaa 650 ||||||||||||||||||||| Sbjct: 18108539 ttctcatattccttcataaaa 18108559
>ref|XM_517289.1| PREDICTED: Pan troglodytes similar to Numb-binding protein 1 (Ligand of Numb-protein X 1) (UNQ574/PRO1136) (LOC461321), mRNA Length = 1206 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 aaataaaatacaataacatt 60 |||||||||||||||||||| Sbjct: 1180 aaataaaatacaataacatt 1199
>gb|AC130658.36| Mus musculus chromosome 1, clone RP23-309D5, complete sequence Length = 184094 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 355 ggatcttctgtgccactcca 374 |||||||||||||||||||| Sbjct: 171854 ggatcttctgtgccactcca 171873
>ref|XM_419993.1| PREDICTED: Gallus gallus similar to selective LIM-binding factor Wimple (LOC421983), mRNA Length = 5862 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 490 tctgtttctcctgcaaatcc 509 |||||||||||||||||||| Sbjct: 2989 tctgtttctcctgcaaatcc 2970
>ref|XM_419534.1| PREDICTED: Gallus gallus similar to hypothetical protein FLJ32001 (LOC421487), mRNA Length = 2760 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 623 cattgccttctcatattcct 642 |||||||||||||||||||| Sbjct: 639 cattgccttctcatattcct 620
>gb|AC164581.7| Mus musculus 10 BAC RP23-45O2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 199422 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 aagaaataaaatacaataac 57 |||||||||||||||||||| Sbjct: 175657 aagaaataaaatacaataac 175676
>gb|BC045275.1| Xenopus laevis hypothetical protein MGC64474, mRNA (cDNA clone IMAGE:4684066), partial cds Length = 1811 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 atagaactgtaacataatag 162 |||||||||||||||||||| Sbjct: 842 atagaactgtaacataatag 823
>gb|BC054975.1| Xenopus laevis hypothetical protein MGC64474, mRNA (cDNA clone MGC:64474 IMAGE:6881346), complete cds Length = 2110 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 atagaactgtaacataatag 162 |||||||||||||||||||| Sbjct: 867 atagaactgtaacataatag 848
>emb|CR545470.5| Zebrafish DNA sequence from clone CH211-175E15 in linkage group 15, complete sequence Length = 38647 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 449 ggtaaggatgttctggattt 468 |||||||||||||||||||| Sbjct: 34004 ggtaaggatgttctggattt 34023
>gb|AC121773.3| Mus musculus BAC clone RP23-349P14 from chromosome 1, complete sequence Length = 191790 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 caagaaataaaatacaataa 56 |||||||||||||||||||| Sbjct: 126451 caagaaataaaatacaataa 126470
>gb|AC122215.4| Mus musculus BAC clone RP23-106M18 from 16, complete sequence Length = 195086 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 aaataaaatacaataacatt 60 |||||||||||||||||||| Sbjct: 192332 aaataaaatacaataacatt 192313
>gb|AC131738.3| Mus musculus BAC clone RP23-94E15 from 16, complete sequence Length = 199386 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 aaataaaatacaataacatt 60 |||||||||||||||||||| Sbjct: 140899 aaataaaatacaataacatt 140918
>gb|AC149268.21| Medicago truncatula clone mth2-94j16, complete sequence Length = 146810 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 22 catttccctagacagcaagaaata 45 |||||||||||||||||| ||||| Sbjct: 149 catttccctagacagcaacaaata 126
>gb|AC137668.18| Medicago truncatula clone mth2-5f8, complete sequence Length = 133085 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 22 catttccctagacagcaagaaata 45 |||||||||||||||||| ||||| Sbjct: 47582 catttccctagacagcaacaaata 47605
>emb|CR786580.6| Human DNA sequence from clone RP11-764K9 on chromosome 9 Contains two novel pseudogenes, a novel gene, a pseudogene similar to part of double homeobox, 4 (DUX4), a FSHD region gene 1 (FRG1) pseudogene and four CpG islands, complete sequence Length = 191980 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 agacagcaagaaataaaata 50 |||||||||||||||||||| Sbjct: 123392 agacagcaagaaataaaata 123411
>emb|AL359203.22| Human DNA sequence from clone RP11-547P4 on chromosome 1 Contains a pseudogene similar to part of tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta polypeptide (YWHAQ), complete sequence Length = 121362 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 acagcaagaaataaaataca 52 |||||||||||||||||||| Sbjct: 42684 acagcaagaaataaaataca 42703
>emb|AL137143.8| Human DNA sequence from clone RP11-207N4 on chromosome 13 Contains the 5' end of a novel gene (CG003, 13CDNA73), a novel gene and 2 CpG islands, complete sequence Length = 155151 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 541 tgatctgctgaacacacctcctta 564 |||||||||||| ||||||||||| Sbjct: 12368 tgatctgctgaagacacctcctta 12391
>emb|AL596168.1| Listeria innocua Clip11262 complete genome, segment 6/12 Length = 333050 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 aaaatacaataacattctac 64 |||||||||||||||||||| Sbjct: 157946 aaaatacaataacattctac 157927
>emb|AL590448.1|CNS07EGF chromosome VIII of strain GB-M1 of Encephalitozoon cuniculi (Microspora) Length = 238147 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 535 ccttgttgatctgctgaaca 554 |||||||||||||||||||| Sbjct: 68478 ccttgttgatctgctgaaca 68497
>emb|AJ313164.1|MMU313164 Mus musculus gene for langerin, exons 1-6 Length = 12349 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 tctgtttgtccactgtgaag 100 |||||||||||||||||||| Sbjct: 4235 tctgtttgtccactgtgaag 4216
>emb|AJ302711.1|MMU302711 Mus musculus mRNA for C type lectin (langerin gene) Length = 1565 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 tctgtttgtccactgtgaag 100 |||||||||||||||||||| Sbjct: 119 tctgtttgtccactgtgaag 100
>emb|AL645606.22| Mouse DNA sequence from clone RP23-374K2 on chromosome 1, complete sequence Length = 193458 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 476 ctgcatagctttactctgtt 495 |||||||||||||||||||| Sbjct: 179411 ctgcatagctttactctgtt 179392
>emb|CR858284.1| Pongo pygmaeus mRNA; cDNA DKFZp468J217 (from clone DKFZp468J217) Length = 2961 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 466 tttctgggtcctgcatagct 485 |||||||||||||||||||| Sbjct: 1065 tttctgggtcctgcatagct 1084
>gb|AC090647.6| Genomic sequence for Mus musculus, clone RP23-252I12, complete sequence Length = 139891 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 tctgtttgtccactgtgaag 100 |||||||||||||||||||| Sbjct: 119135 tctgtttgtccactgtgaag 119116
>gb|AY078415.1| Mus musculus strain C57BL/6 langerin mRNA, complete cds Length = 996 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 tctgtttgtccactgtgaag 100 |||||||||||||||||||| Sbjct: 61 tctgtttgtccactgtgaag 42
>dbj|AK142731.1| Mus musculus 16 days neonate heart cDNA, RIKEN full-length enriched library, clone:D830032H06 product:CD 207 antigen, full insert sequence Length = 1471 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 tctgtttgtccactgtgaag 100 |||||||||||||||||||| Sbjct: 61 tctgtttgtccactgtgaag 42
>gb|AY026050.1| Mus musculus langerin mRNA, complete cds Length = 1493 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 tctgtttgtccactgtgaag 100 |||||||||||||||||||| Sbjct: 61 tctgtttgtccactgtgaag 42
>gb|AC162390.6| Mus musculus 6 BAC RP23-233J7 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 229971 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 641 cttcataaaaaactgaactg 660 |||||||||||||||||||| Sbjct: 152427 cttcataaaaaactgaactg 152408
>emb|BX663499.5| Zebrafish DNA sequence from clone CH211-160I2 in linkage group 2, complete sequence Length = 195369 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 caagaaataaaatacaataa 56 |||||||||||||||||||| Sbjct: 138806 caagaaataaaatacaataa 138787
>emb|CR388477.1| Gallus gallus finished cDNA, clone ChEST1020i17 Length = 841 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 623 cattgccttctcatattcct 642 |||||||||||||||||||| Sbjct: 245 cattgccttctcatattcct 226
>gb|AC158336.1| Homo sapiens chromosome 22 clone WI2-3379H11, complete sequence Length = 37861 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 466 tttctgggtcctgcatagct 485 |||||||||||||||||||| Sbjct: 24987 tttctgggtcctgcatagct 25006
>gb|AC073897.6|AC073897 Homo sapiens chromosome 15 clone RP11-718O11 map 15q21.1, complete sequence Length = 180538 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 611 ctggtaagtttccattgcct 630 |||||||||||||||||||| Sbjct: 35113 ctggtaagtttccattgcct 35132
>gb|AC068722.6|AC068722 Homo sapiens chromosome 15 clone CTD-2306A12 map 15q21.1, complete sequence Length = 151924 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 611 ctggtaagtttccattgcct 630 |||||||||||||||||||| Sbjct: 144130 ctggtaagtttccattgcct 144149
>gb|AC095040.3| Homo sapiens BAC clone RP11-18M17 from 4, complete sequence Length = 90171 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 aaataaaatacaataacatt 60 |||||||||||||||||||| Sbjct: 5956 aaataaaatacaataacatt 5937
>gb|AC177808.2| Pan troglodytes BAC clone CH251-703A9 from chromosome unknown, complete sequence Length = 207792 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 aaataaaatacaataacatt 60 |||||||||||||||||||| Sbjct: 86992 aaataaaatacaataacatt 86973
>gb|AC021049.12| Homo sapiens 12 BAC RP11-904M10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 175315 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 616 aagtttccattgccttctca 635 |||||||||||||||||||| Sbjct: 94130 aagtttccattgccttctca 94149
>gb|AF240786.1|AF240786 Homo sapiens glutathione S-transferase theta 2 (GSTT2) and glutathione S-transferase theta 1 (GSTT1) genes, complete cds Length = 118999 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 466 tttctgggtcctgcatagct 485 |||||||||||||||||||| Sbjct: 24501 tttctgggtcctgcatagct 24482 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 466 tttctgggtcctgcatagct 485 |||||||||||||||||||| Sbjct: 19285 tttctgggtcctgcatagct 19304
>emb|AL954187.5| Zebrafish DNA sequence from clone CH211-69P5 in linkage group 15, complete sequence Length = 185137 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 449 ggtaaggatgttctggattt 468 |||||||||||||||||||| Sbjct: 32788 ggtaaggatgttctggattt 32807
>emb|AL672020.5| Mouse DNA sequence from clone RP23-185A3 on chromosome X, complete sequence Length = 200613 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 aaataaaatacaataacatt 60 |||||||||||||||||||| Sbjct: 162813 aaataaaatacaataacatt 162794
>gb|AC133462.18| Mus musculus chromosome 1, clone RP24-441D8, complete sequence Length = 140132 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 355 ggatcttctgtgccactcca 374 |||||||||||||||||||| Sbjct: 14676 ggatcttctgtgccactcca 14695
>emb|Z84718.2|HS322B1 Human DNA sequence from clone CTA-322B1 on chromosome 22q11-12, complete sequence Length = 76798 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 466 tttctgggtcctgcatagct 485 |||||||||||||||||||| Sbjct: 76572 tttctgggtcctgcatagct 76591
>gb|AY550246.1| Paracoccidioides brasiliensis small G-protein GPA1 (gpa1) gene, complete cds Length = 3825 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 146 gaactgtaacataatagccgtaaa 169 |||||||||||||| ||||||||| Sbjct: 1039 gaactgtaacataacagccgtaaa 1062
>gb|AC153949.3| Mus musculus 10 BAC RP24-366H8 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 145982 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 aagaaataaaatacaataac 57 |||||||||||||||||||| Sbjct: 75349 aagaaataaaatacaataac 75330
>gb|AF058293.1|AF058293 Homo sapiens D-dopachrome tautomerase gene, complete cds Length = 8435 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 466 tttctgggtcctgcatagct 485 |||||||||||||||||||| Sbjct: 6557 tttctgggtcctgcatagct 6576
>ref|NM_144943.2| Mus musculus CD 207 antigen (Cd207), mRNA Length = 1565 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 tctgtttgtccactgtgaag 100 |||||||||||||||||||| Sbjct: 119 tctgtttgtccactgtgaag 100
>gb|AC002525.1|AC002525 Human PAC clone 257C22A from 13q12-q13, complete sequence Length = 140942 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 541 tgatctgctgaacacacctcctta 564 |||||||||||| ||||||||||| Sbjct: 101819 tgatctgctgaagacacctcctta 101842
>emb|Y11151.1|HSPPTII H.sapiens gene encoding phenylpyruvate tautomerase II Length = 9919 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 466 tttctgggtcctgcatagct 485 |||||||||||||||||||| Sbjct: 8039 tttctgggtcctgcatagct 8058
>dbj|AP000352.2| Homo sapiens genomic DNA, chromosome 22q11.2, clone KB1561E1 Length = 152244 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 466 tttctgggtcctgcatagct 485 |||||||||||||||||||| Sbjct: 227 tttctgggtcctgcatagct 208
>dbj|AP000351.3| Homo sapiens genomic DNA, chromosome 22q11.2, clone KB226F1 Length = 118999 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 466 tttctgggtcctgcatagct 485 |||||||||||||||||||| Sbjct: 24500 tttctgggtcctgcatagct 24481 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 466 tttctgggtcctgcatagct 485 |||||||||||||||||||| Sbjct: 19284 tttctgggtcctgcatagct 19303
>dbj|AP000350.1| Homo sapiens genomic DNA, chromosome 22q11.2, clone KB1125A3 Length = 162328 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 466 tttctgggtcctgcatagct 485 |||||||||||||||||||| Sbjct: 162102 tttctgggtcctgcatagct 162121 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,600,066 Number of Sequences: 3902068 Number of extensions: 6600066 Number of successful extensions: 141095 Number of sequences better than 10.0: 87 Number of HSP's better than 10.0 without gapping: 87 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 140738 Number of HSP's gapped (non-prelim): 355 length of query: 704 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 681 effective length of database: 17,143,297,704 effective search space: 11674585736424 effective search space used: 11674585736424 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)