ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags37n19 |
|---|---|
| Clone Library Name | barley_pub |
>RS6A_ARATH (O48549) 40S ribosomal protein S6-1| Length = 250 Score = 194 bits (494), Expect = 1e-49 Identities = 99/135 (73%), Positives = 111/135 (82%) Frame = -1 Query: 557 VKKGENDLPGLTDTEKPRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVS 378 VKKGENDLPGLTDTEKPRMRGPKRASKI+KLFNL K+DDVR+YVNTYRR F NKKGK+VS Sbjct: 116 VKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKEVS 175 Query: 377 KAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKR 198 KAPKIQRLVTPLTLQ S+AA+YQKLLA RLKEQRDRRSES+AK+ Sbjct: 176 KAPKIQRLVTPLTLQRKRARIADKKKKIAKANSDAADYQKLLASRLKEQRDRRSESLAKK 235 Query: 197 RSKLSAATKAPAVSA 153 RS+LS+A P+V+A Sbjct: 236 RSRLSSAAAKPSVTA 250
>RS6B_ARATH (P51430) 40S ribosomal protein S6-2| Length = 249 Score = 192 bits (489), Expect = 4e-49 Identities = 98/134 (73%), Positives = 108/134 (80%) Frame = -1 Query: 557 VKKGENDLPGLTDTEKPRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVS 378 VKKG +DLPGLTDTEKPRMRGPKRASKI+KLFNLGK+DDVR YVNTYRRTF NKKGKKVS Sbjct: 116 VKKGVSDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGKKVS 175 Query: 377 KAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKR 198 KAPKIQRLVTPLTLQ S+AA+YQKLLA RLKEQRDRRSES+AK+ Sbjct: 176 KAPKIQRLVTPLTLQRKRARIADKKKRIAKANSDAADYQKLLASRLKEQRDRRSESLAKK 235 Query: 197 RSKLSAATKAPAVS 156 RS+LS+A P + Sbjct: 236 RSRLSSAPAKPVAA 249
>RS6_ASPOF (Q9M3V8) 40S ribosomal protein S6| Length = 251 Score = 192 bits (488), Expect = 6e-49 Identities = 103/136 (75%), Positives = 109/136 (80%), Gaps = 1/136 (0%) Frame = -1 Query: 557 VKKGENDLPGLTDTEKPRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVS 378 VKKGENDLPGLTD EKPRMRGPKRASKI+KLFNL K+DDVR YVNTYRRTF NKKGK S Sbjct: 116 VKKGENDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTNKKGKTCS 175 Query: 377 KAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKR 198 KAPKIQRLVTPLTLQ KSEAAEYQKLLA RLKEQRDRRSES+AK+ Sbjct: 176 KAPKIQRLVTPLTLQRKRARIAEKKKRVAKAKSEAAEYQKLLASRLKEQRDRRSESLAKK 235 Query: 197 RSKLS-AATKAPAVSA 153 RS+LS AA K +VSA Sbjct: 236 RSRLSAAAAKTASVSA 251
>RS6_TOBAC (P29345) 40S ribosomal protein S6 (Fragment)| Length = 199 Score = 144 bits (363), Expect = 2e-34 Identities = 83/135 (61%), Positives = 97/135 (71%) Frame = -1 Query: 557 VKKGENDLPGLTDTEKPRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVS 378 VKKGENDLPGLTDTEKPRMRGP+ + + L+ K+DDVR YVNT KG S Sbjct: 71 VKKGENDLPGLTDTEKPRMRGPREPQRSEALYF--KEDDVRKYVNTTAEFTTKWKG---S 125 Query: 377 KAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKR 198 KAPKIQRLVTPLTLQ KSEAAEYQKLLA RLKEQR++RSES+AK+ Sbjct: 126 KAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQREKRSESLAKK 185 Query: 197 RSKLSAATKAPAVSA 153 RS+LSAA+K P+++A Sbjct: 186 RSRLSAASK-PSIAA 199
>RS6_RAT (P62755) 40S ribosomal protein S6| Length = 249 Score = 128 bits (322), Expect = 1e-29 Identities = 76/131 (58%), Positives = 89/131 (67%), Gaps = 3/131 (2%) Frame = -1 Query: 557 VKKGENDLPGLTDTEKPRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKV- 381 VKKGE D+PGLTDT PR GPKRAS+I+KLFNL K+DDVR YV R LNK+GKK Sbjct: 114 VKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV---VRKPLNKEGKKPR 170 Query: 380 SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAK 201 +KAPKIQRLVTP LQ K EAAEY KLLA+R+KE +++R E +AK Sbjct: 171 TKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAK 230 Query: 200 RR--SKLSAAT 174 RR S L A+T Sbjct: 231 RRRLSSLRAST 241
>RS6_MOUSE (P62754) 40S ribosomal protein S6 (Phosphoprotein NP33)| Length = 249 Score = 128 bits (322), Expect = 1e-29 Identities = 76/131 (58%), Positives = 89/131 (67%), Gaps = 3/131 (2%) Frame = -1 Query: 557 VKKGENDLPGLTDTEKPRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKV- 381 VKKGE D+PGLTDT PR GPKRAS+I+KLFNL K+DDVR YV R LNK+GKK Sbjct: 114 VKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV---VRKPLNKEGKKPR 170 Query: 380 SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAK 201 +KAPKIQRLVTP LQ K EAAEY KLLA+R+KE +++R E +AK Sbjct: 171 TKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAK 230 Query: 200 RR--SKLSAAT 174 RR S L A+T Sbjct: 231 RRRLSSLRAST 241
>RS6_HUMAN (P62753) 40S ribosomal protein S6 (Phosphoprotein NP33)| Length = 249 Score = 128 bits (322), Expect = 1e-29 Identities = 76/131 (58%), Positives = 89/131 (67%), Gaps = 3/131 (2%) Frame = -1 Query: 557 VKKGENDLPGLTDTEKPRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKV- 381 VKKGE D+PGLTDT PR GPKRAS+I+KLFNL K+DDVR YV R LNK+GKK Sbjct: 114 VKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV---VRKPLNKEGKKPR 170 Query: 380 SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAK 201 +KAPKIQRLVTP LQ K EAAEY KLLA+R+KE +++R E +AK Sbjct: 171 TKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAK 230 Query: 200 RR--SKLSAAT 174 RR S L A+T Sbjct: 231 RRRLSSLRAST 241
>RS6_CHICK (P47838) 40S ribosomal protein S6| Length = 249 Score = 127 bits (319), Expect = 2e-29 Identities = 75/131 (57%), Positives = 89/131 (67%), Gaps = 3/131 (2%) Frame = -1 Query: 557 VKKGENDLPGLTDTEKPRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKV- 381 VKKGE D+PGLTDT PR GPKRAS+I+KLFNL K+DDVR YV R LNK+GKK Sbjct: 114 VKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV---VRKPLNKEGKKPR 170 Query: 380 SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAK 201 +KAPKIQRLVTP LQ K EAA+Y KLLA+R+KE +++R E +AK Sbjct: 171 TKAPKIQRLVTPRVLQHKRRRIALKKQRTQKNKEEAADYAKLLAKRMKEAKEKRQEQIAK 230 Query: 200 RR--SKLSAAT 174 RR S L A+T Sbjct: 231 RRRLSSLRAST 241
>RS6_ONCMY (Q9YGF2) 40S ribosomal protein S6| Length = 249 Score = 123 bits (308), Expect = 4e-28 Identities = 72/131 (54%), Positives = 88/131 (67%), Gaps = 3/131 (2%) Frame = -1 Query: 557 VKKGENDLPGLTDTEKPRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKV- 381 +KKGE D+PGLTD+ PR GPKRASKI+KLFNL K+DDVR YV R L K+GKK Sbjct: 114 IKKGEKDIPGLTDSTVPRRLGPKRASKIRKLFNLAKEDDVRQYV---VRRPLTKEGKKPR 170 Query: 380 SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAK 201 +KAP+IQRLVTP LQ K EA+EY KLLA+R+KE +++R E +AK Sbjct: 171 TKAPRIQRLVTPRVLQHKRRRIALKKQRTQKNKEEASEYAKLLAKRMKEAKEKRQEQIAK 230 Query: 200 RR--SKLSAAT 174 RR S L A+T Sbjct: 231 RRRLSSLRAST 241
>RS6_ICTPU (Q90YR8) 40S ribosomal protein S6| Length = 249 Score = 122 bits (306), Expect = 7e-28 Identities = 69/122 (56%), Positives = 83/122 (68%), Gaps = 1/122 (0%) Frame = -1 Query: 557 VKKGENDLPGLTDTEKPRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKV- 381 ++KGE D+PGLTD+ PR GPKRAS+I+KLFNL K+DDVR YV R L K+GKK Sbjct: 114 IRKGEKDIPGLTDSTVPRRLGPKRASRIRKLFNLSKEDDVRQYV---VRRPLTKEGKKPR 170 Query: 380 SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAK 201 +KAPKIQRLVTP LQ K EAAEY KLLA+RLKE +++R E +AK Sbjct: 171 TKAPKIQRLVTPRVLQHKRRRIALKRQRTQKNKDEAAEYAKLLAKRLKEAKEKRQEKIAK 230 Query: 200 RR 195 RR Sbjct: 231 RR 232
>RS6_XENLA (P39017) 40S ribosomal protein S6| Length = 249 Score = 119 bits (299), Expect = 5e-27 Identities = 72/131 (54%), Positives = 86/131 (65%), Gaps = 3/131 (2%) Frame = -1 Query: 557 VKKGENDLPGLTDTEKPRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKV- 381 V+KGE D+PGLTD PR GPKRAS+I+KLFNL K+DDVR YV R L K+GKK Sbjct: 114 VRKGEKDIPGLTDNTVPRRLGPKRASRIRKLFNLSKEDDVRQYV---VRKPLAKEGKKPR 170 Query: 380 SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAK 201 +KAPKIQRLVTP LQ K EA+EY KLLA+R KE +++R E +AK Sbjct: 171 TKAPKIQRLVTPRVLQHKRRRIALKKQRTQKNKEEASEYAKLLAKRSKEAKEKRQEQIAK 230 Query: 200 RR--SKLSAAT 174 RR S L A+T Sbjct: 231 RRRLSSLRAST 241
>RS6_APLCA (Q9BMX5) 40S ribosomal protein S6| Length = 247 Score = 116 bits (291), Expect = 4e-26 Identities = 67/125 (53%), Positives = 80/125 (64%), Gaps = 2/125 (1%) Frame = -1 Query: 557 VKKGENDLPGLTDTEKPRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKV- 381 +KKGE D+PGLTD PR GPKRASKI+KLFNL K+DDVR YV RR + GKK Sbjct: 114 IKKGEQDIPGLTDKTIPRRLGPKRASKIRKLFNLSKEDDVRQYV--VRRPLPERDGKKAK 171 Query: 380 SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSE-SMA 204 SKAPKIQRLVTP+ LQ + + AEY KLLAQR+KE ++R+ E + Sbjct: 172 SKAPKIQRLVTPVVLQRKRARMALKKKRVTKKREDHAEYTKLLAQRMKEAKERKMERKRS 231 Query: 203 KRRSK 189 RSK Sbjct: 232 NSRSK 236
>RS6_DROME (P29327) 40S ribosomal protein S6| Length = 248 Score = 112 bits (280), Expect = 8e-25 Identities = 68/136 (50%), Positives = 82/136 (60%), Gaps = 1/136 (0%) Frame = -1 Query: 557 VKKGENDLPGLTDTEKPRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKK-V 381 +KKGE D+PGLTDT PR GPKRASKI+KL+NL K+DDVR +V RR K KK Sbjct: 114 LKKGEKDIPGLTDTTIPRRLGPKRASKIRKLYNLSKEDDVRRFV--VRRPLPAKDNKKAT 171 Query: 380 SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAK 201 SKAPKIQRL+TP+ LQ K +A+Y KLL QR KE + +R E AK Sbjct: 172 SKAPKIQRLITPVVLQRKHRRIALKKKRQIASKEASADYAKLLVQRKKESKAKREE--AK 229 Query: 200 RRSKLSAATKAPAVSA 153 RR S +VS+ Sbjct: 230 RRRSASIRESKSSVSS 245
>RS6_MANSE (Q94624) 40S ribosomal protein S6| Length = 253 Score = 111 bits (278), Expect = 1e-24 Identities = 68/139 (48%), Positives = 84/139 (60%), Gaps = 4/139 (2%) Frame = -1 Query: 557 VKKGENDLPGLTDTEKPRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVS 378 V+KGE ++PGLTD PR GPKRASKI+KLFNL K+DDVR YV + K+GK+ + Sbjct: 114 VRKGEQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKALLPAKEGKENA 171 Query: 377 ----KAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSES 210 KAPKIQRLVTP+ LQ KS A+Y KLLAQR KE + RR E Sbjct: 172 KPRYKAPKIQRLVTPVVLQRRRHRLALKKKRLAKRKSAEADYAKLLAQRKKESKVRRQEE 231 Query: 209 MAKRRSKLSAATKAPAVSA 153 + +RRS +K+ SA Sbjct: 232 IKRRRSASMRDSKSSNQSA 250
>RS6_SPOFR (Q95V32) 40S ribosomal protein S6| Length = 253 Score = 110 bits (276), Expect = 2e-24 Identities = 67/139 (48%), Positives = 83/139 (59%), Gaps = 4/139 (2%) Frame = -1 Query: 557 VKKGENDLPGLTDTEKPRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVS 378 V+KGE ++PGLTD PR GPKRASKI+KLFNL K+DDVR YV +R K+GK+ + Sbjct: 114 VRKGEQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRLLPAKEGKENA 171 Query: 377 ----KAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSES 210 KAPKIQRLVTP+ LQ K +Y KLLAQR KE + RR E Sbjct: 172 KPRYKAPKIQRLVTPVVLQRRRHRLALKKKRLAKRKQSENDYAKLLAQRKKESKVRRQEE 231 Query: 209 MAKRRSKLSAATKAPAVSA 153 + +RRS +K+ SA Sbjct: 232 LKRRRSASMRDSKSSDKSA 250
>RS6_BRAFL (O01727) 40S ribosomal protein S6| Length = 244 Score = 108 bits (271), Expect = 8e-24 Identities = 65/123 (52%), Positives = 76/123 (61%), Gaps = 1/123 (0%) Frame = -1 Query: 557 VKKGENDLPGLTDTEKPRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVS 378 +KKGE D+PGLTDT PR GPKRA +I+KLFNL K+DDVR YV RR K+GKK Sbjct: 114 LKKGEQDIPGLTDTTIPRRLGPKRAGRIRKLFNLNKEDDVRQYV--VRRPLPQKEGKKQK 171 Query: 377 -KAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAK 201 K PKIQRL+TP LQ + E A Y KLLA+R KE+R E+ AK Sbjct: 172 FKTPKIQRLITPQRLQRKRHMRAVKRRRYAKQREEEATYAKLLAKRKKEER----EAHAK 227 Query: 200 RRS 192 RRS Sbjct: 228 RRS 230
>RS6A_SCHPO (P05752) 40S ribosomal protein S6-A| Length = 239 Score = 106 bits (265), Expect = 4e-23 Identities = 59/125 (47%), Positives = 78/125 (62%), Gaps = 1/125 (0%) Frame = -1 Query: 557 VKKGENDLPGLTDTEKPRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKK-V 381 +K+GE D+PGLTD P+ GPKRASKI++ FNL K+DDVR +V R K+GKK Sbjct: 114 IKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFV-IRREVVPKKEGKKPY 172 Query: 380 SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAK 201 +KAPKIQRLVTP TLQ + EAAE+ +L+A+R+ E + +R A+ Sbjct: 173 TKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAKQKREVVKAR 232 Query: 200 RRSKL 186 R S L Sbjct: 233 RASSL 237
>RS6_AEDAE (Q9U761) 40S ribosomal protein S6| Length = 346 Score = 105 bits (261), Expect = 1e-22 Identities = 60/127 (47%), Positives = 76/127 (59%), Gaps = 1/127 (0%) Frame = -1 Query: 557 VKKGENDLPGLTDTEKPRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKV- 381 VKKGE D+PGLTDT PR GPKRAS I+KL+NL K+DDVR +V +R K GKK Sbjct: 114 VKKGEKDIPGLTDTTVPRRLGPKRASNIRKLYNLTKEDDVRQFV--VKRPLPEKDGKKAR 171 Query: 380 SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAK 201 +KAPKIQRL+TP+ LQ K AEY K+L R +++R RR ++ Sbjct: 172 TKAPKIQRLITPVVLQRKRHRLAIKKRRVESRKEAEAEYMKILHLRRRQERIRRRSRLSS 231 Query: 200 RRSKLSA 180 R S+ Sbjct: 232 MRDSRSS 238
>RS6B_SCHPO (Q9C0Z7) 40S ribosomal protein S6-B| Length = 239 Score = 105 bits (261), Expect = 1e-22 Identities = 58/125 (46%), Positives = 78/125 (62%), Gaps = 1/125 (0%) Frame = -1 Query: 557 VKKGENDLPGLTDTEKPRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKK-V 381 VK+GE D+PGLTD P+ GPKRASKI++ FNL K+DDVR +V R K+GKK Sbjct: 114 VKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFV-IRREVVPKKEGKKPY 172 Query: 380 SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAK 201 +KAPKIQRLVTP TLQ + EAAE+ +L+A+R+ E + ++ A+ Sbjct: 173 TKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAKQKKEVVKAR 232 Query: 200 RRSKL 186 R S + Sbjct: 233 RASSM 237
>RS6_DEBHA (Q6BXH8) 40S ribosomal protein S6| Length = 236 Score = 105 bits (261), Expect = 1e-22 Identities = 61/126 (48%), Positives = 78/126 (61%) Frame = -1 Query: 557 VKKGENDLPGLTDTEKPRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVS 378 VK+G++D+ GLTDT P+ GPKRA+ I+K F L K+DDVR +V RR + K KK + Sbjct: 114 VKQGDSDIEGLTDTTTPKRLGPKRANNIRKFFGLTKEDDVRQFV--VRREVV-KGDKKYT 170 Query: 377 KAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKR 198 KAPKIQRLVTP TLQ + AAEY +LLAQRL E++ R+E +R Sbjct: 171 KAPKIQRLVTPQTLQRKRALKAQKVKNAQQQRDAAAEYAQLLAQRLHERKAERAEIKKRR 230 Query: 197 RSKLSA 180 S L A Sbjct: 231 ASSLKA 236
>RS6_AEDAL (Q9U762) 40S ribosomal protein S6| Length = 349 Score = 102 bits (253), Expect = 1e-21 Identities = 60/127 (47%), Positives = 75/127 (59%), Gaps = 1/127 (0%) Frame = -1 Query: 557 VKKGENDLPGLTDTEKPRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKV- 381 VKKGE D+PGLTDT R GPKRAS I+KL+NL K+DDVR YV +R K GKK Sbjct: 114 VKKGEKDIPGLTDTTVLRRLGPKRASNIRKLYNLTKEDDVRQYV--VKRPLPEKDGKKPR 171 Query: 380 SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAK 201 +KAPKIQRL+TP+ LQ K AEY K+L R +++R RR ++ Sbjct: 172 TKAPKIQRLITPVVLQRKRHRLAIKKRRVESRKEAEAEYMKILHLRRRQERIRRRSRLSS 231 Query: 200 RRSKLSA 180 R S+ Sbjct: 232 MRDSRSS 238
>RS6_YEAST (P02365) 40S ribosomal protein S6 (S10) (YS4) (RP9)| Length = 236 Score = 100 bits (249), Expect = 3e-21 Identities = 58/126 (46%), Positives = 74/126 (58%) Frame = -1 Query: 557 VKKGENDLPGLTDTEKPRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVS 378 VKKGE +L GLTDT P+ GPKRA+ I+K F L K+DDVR +V R + K K + Sbjct: 114 VKKGEQELEGLTDTTVPKRLGPKRANNIRKFFGLSKEDDVRDFV---IRREVTKGEKTYT 170 Query: 377 KAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKR 198 KAPKIQRLVTP LQ + AAEY +LLA+RL E++ ++E +R Sbjct: 171 KAPKIQRLVTPQRLQRKRHQRALKVRNAQAQREAAAEYAQLLAKRLSERKAEKAEIRKRR 230 Query: 197 RSKLSA 180 S L A Sbjct: 231 ASSLKA 236
>RS6_YARLI (Q6C169) 40S ribosomal protein S6| Length = 242 Score = 99.4 bits (246), Expect = 7e-21 Identities = 56/124 (45%), Positives = 72/124 (58%) Frame = -1 Query: 557 VKKGENDLPGLTDTEKPRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVS 378 VK+G+ D+ GLT PR GPKRA+ I+KLF L K+DDVR YV RR K GK + Sbjct: 114 VKQGDADIEGLTTETVPRRLGPKRANNIRKLFALSKEDDVRQYV--IRREVTTKSGKTYT 171 Query: 377 KAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKR 198 KAPKIQRL+TP L K AAEY +LLA+R+ E++ ++E +R Sbjct: 172 KAPKIQRLITPRRLAHKAQLREKKVKAIQASKDAAAEYAQLLAKRVAEKKSEKAEEKKRR 231 Query: 197 RSKL 186 S L Sbjct: 232 ASSL 235
>RS6_CANGA (Q6FJH3) 40S ribosomal protein S6| Length = 236 Score = 96.7 bits (239), Expect = 4e-20 Identities = 56/126 (44%), Positives = 74/126 (58%) Frame = -1 Query: 557 VKKGENDLPGLTDTEKPRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVS 378 VKKGE +L G+TD P+ GPKRA+ I+K F L K+DDVR +V R + K K + Sbjct: 114 VKKGEQELEGVTDATVPKRLGPKRANHIRKFFGLTKEDDVRDFV---IRREVTKGEKTYT 170 Query: 377 KAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKR 198 KAPKIQRLVTP LQ + AAEY +LLA+RL E++ ++E+ +R Sbjct: 171 KAPKIQRLVTPQRLQRKRYQRNLKVRNAQAQREAAAEYAQLLAKRLAERKAEKAETRKRR 230 Query: 197 RSKLSA 180 S L A Sbjct: 231 ASSLKA 236
>RS6_CAEEL (Q9NEN6) 40S ribosomal protein S6| Length = 246 Score = 96.3 bits (238), Expect = 6e-20 Identities = 57/125 (45%), Positives = 75/125 (60%) Frame = -1 Query: 557 VKKGENDLPGLTDTEKPRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVS 378 VKKG+ ++ GLTD+ PR GPKRASKI+KLFNL K DDV YV T+ +TF + K + Sbjct: 114 VKKGDGEIEGLTDSVLPRKLGPKRASKIRKLFNLTKHDDVTKYVITHDKTFPDGVTKTI- 172 Query: 377 KAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKR 198 APKIQRL+TP + + +AA Y KLLA+ KE+ D + +A+R Sbjct: 173 -APKIQRLITPARIARKKYLLRQKRNQKIKMRDDAAAYHKLLAKYSKEEHDAK---IARR 228 Query: 197 RSKLS 183 RS S Sbjct: 229 RSSAS 233
>RS6_KLULA (Q6CM04) 40S ribosomal protein S6| Length = 236 Score = 94.7 bits (234), Expect = 2e-19 Identities = 54/125 (43%), Positives = 72/125 (57%) Frame = -1 Query: 554 KKGENDLPGLTDTEKPRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVSK 375 KKGE ++ G+T+ P+ GPKRA+ I+K F L K+DDVR YV R + K K +K Sbjct: 115 KKGEQEIEGITNDTVPKRLGPKRANNIRKFFGLTKEDDVRDYV---IRREVTKGDKSYTK 171 Query: 374 APKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRR 195 APKIQRLVTP LQ + AAEY +LLA+RL E++ ++E +R Sbjct: 172 APKIQRLVTPQRLQRKRQQKSLKIKNAQAQREAAAEYAQLLAKRLSERKAEKAEVRKRRA 231 Query: 194 SKLSA 180 S L A Sbjct: 232 SSLKA 236
>RS6_ASHGO (Q74ZK3) 40S ribosomal protein S6| Length = 236 Score = 93.2 bits (230), Expect = 5e-19 Identities = 54/125 (43%), Positives = 73/125 (58%) Frame = -1 Query: 554 KKGENDLPGLTDTEKPRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVSK 375 KKG+ ++ G+T+ P+ GPKRA+ I+K F L KDDDVR +V RR + K K +K Sbjct: 115 KKGDQEIEGITNESVPKRLGPKRANNIRKFFGLTKDDDVRDFV--IRREVV-KGDKTYTK 171 Query: 374 APKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKRR 195 APKIQRLVTP LQ + AAEY +LLA+RL E++ ++E +R Sbjct: 172 APKIQRLVTPQRLQRKRHQRALKVRNAQAQREAAAEYAQLLAKRLTEKKAEKAEERKRRA 231 Query: 194 SKLSA 180 S L A Sbjct: 232 SSLKA 236
>RS6_KLUMA (P41798) 40S ribosomal protein S6 (Ribosomal protein S10)| Length = 235 Score = 91.3 bits (225), Expect = 2e-18 Identities = 56/127 (44%), Positives = 73/127 (57%) Frame = -1 Query: 557 VKKGENDLPGLTDTEKPRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVS 378 VKKG+ ++ G+T+ P+ GPKRA+ I+K F L K+DDVR YV R + K K + Sbjct: 114 VKKGDQEIEGVTNETVPKRLGPKRANNIRKFFGLTKEDDVRDYV---IRREVTKGEKTYT 170 Query: 377 KAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLAQRLKEQRDRRSESMAKR 198 KAPKIQRLVTP LQ + AAEY +LLA+RL E R++E +R Sbjct: 171 KAPKIQRLVTPQRLQRKRQQKALKIKNAQAQREAAAEYAQLLAKRLAE---RKAEVRKRR 227 Query: 197 RSKLSAA 177 S L AA Sbjct: 228 ASSLKAA 234
>RS6_LEIIN (O44012) 40S ribosomal protein S6| Length = 249 Score = 82.8 bits (203), Expect = 6e-16 Identities = 51/133 (38%), Positives = 72/133 (54%), Gaps = 5/133 (3%) Frame = -1 Query: 554 KKGENDLPGLTDTEKPRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVSK 375 K G+ + G+TDT PR GPKRASKI+KLFNL + +DVR YV RR + K K Sbjct: 118 KVGDQPIEGVTDTTAPRRLGPKRASKIRKLFNLSRTEDVRKYV--VRRRVVKSGKKDRLK 175 Query: 374 APKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLA--QRLKEQRD---RRSES 210 APKIQRL+TP +E EY +L+A +R QRD + ++ Sbjct: 176 APKIQRLITPRVKARRAKKAKDAIAKVRASAAERREYLRLIASNRRALRQRDHSKKHTQK 235 Query: 209 MAKRRSKLSAATK 171 + +R++++A K Sbjct: 236 VHAQRAEVAAFQK 248
>RS6_LEIMA (Q9NE83) 40S ribosomal protein S6| Length = 249 Score = 82.4 bits (202), Expect = 8e-16 Identities = 52/133 (39%), Positives = 70/133 (52%), Gaps = 5/133 (3%) Frame = -1 Query: 554 KKGENDLPGLTDTEKPRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVSK 375 K G+ + G+TDT PR GPKRASKI+KLFNL + +DVR YV RR + K K Sbjct: 118 KVGDQPIEGVTDTTAPRRLGPKRASKIRKLFNLSRTEDVRKYV--VRRRVVKSGKKDRLK 175 Query: 374 APKIQRLVTPLTLQXXXXXXXXXXXXXXXXKSEAAEYQKLLA--QRLKEQRDRRSESMAK 201 APKIQRL+TP +E EY +L+A +R QRD + K Sbjct: 176 APKIQRLITPRVKARRAKKAKDAIAKVRASAAERREYLRLIASNRRALRQRDHSKKHTRK 235 Query: 200 ---RRSKLSAATK 171 +R++++A K Sbjct: 236 VHAQRAEVAAFQK 248
>RS6_ENCCU (Q8SRY0) 40S ribosomal protein S6| Length = 203 Score = 32.0 bits (71), Expect = 1.3 Identities = 19/66 (28%), Positives = 34/66 (51%) Frame = -1 Query: 557 VKKGENDLPGLTDTEKPRMRGPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGKKVS 378 ++ GE ++ GLT+ P++ K++K+F G D+ ++ V Y R L + Sbjct: 99 LRPGEKEIDGLTNAVNDVSHLPRKEKKLRKMF--GVPDEEKNVVG-YIRNILKSECDDPK 155 Query: 377 KAPKIQ 360 K PKI+ Sbjct: 156 KIPKIR 161
>YBK7_YEAST (P38162) Protein YBL107C| Length = 196 Score = 30.8 bits (68), Expect = 2.9 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 2/54 (3%) Frame = -1 Query: 542 NDLPGLTDTEKPRMR--GPKRASKIKKLFNLGKDDDVRSYVNTYRRTFLNKKGK 387 ND P LT R R P + G DD +R +N YR+ +N K K Sbjct: 23 NDEPSLTTITVTRERCVDPSLIDSFLRFLRHGSDDIIRQKLNNYRKGSINGKNK 76
>ERCC5_HUMAN (P28715) DNA-repair protein complementing XP-G cells (Xeroderma| pigmentosum group G-complementing protein) (DNA excision repair protein ERCC-5) Length = 1186 Score = 29.6 bits (65), Expect = 6.5 Identities = 20/59 (33%), Positives = 32/59 (54%) Frame = -1 Query: 272 AEYQKLLAQRLKEQRDRRSESMAKRRSKLSAATKAPAVSA*DVYSLSLLIIMAKEFQAL 96 A+ +K A+R+K QR R+ + R+ K +AA++ AVS + M KEF+ L Sbjct: 1000 AQQEKEDAKRIKSQRLNRAVTCMLRKEKEAAASEIEAVS----------VAMEKEFELL 1048
>DCTN4_RAT (Q9QUR2) Dynactin subunit 4 (Dynactin subunit p62)| Length = 467 Score = 29.6 bits (65), Expect = 6.5 Identities = 17/45 (37%), Positives = 26/45 (57%) Frame = -1 Query: 269 EYQKLLAQRLKEQRDRRSESMAKRRSKLSAATKAPAVSA*DVYSL 135 EY + LAQ+ K +RDR+ +A+RR+ + A + D YSL Sbjct: 149 EYYQQLAQKEKVERDRKK--LARRRNYMPLAFSQHTIHVVDKYSL 191
>DCTN4_MOUSE (Q8CBY8) Dynactin subunit 4 (Dynactin subunit p62)| Length = 467 Score = 29.6 bits (65), Expect = 6.5 Identities = 17/45 (37%), Positives = 26/45 (57%) Frame = -1 Query: 269 EYQKLLAQRLKEQRDRRSESMAKRRSKLSAATKAPAVSA*DVYSL 135 EY + LAQ+ K +RDR+ +A+RR+ + A + D YSL Sbjct: 149 EYYQQLAQKEKVERDRKK--LARRRNYMPLAFSQHTIHVVDKYSL 191
>M22_STRPY (P50469) M protein, serotype 2.2 precursor| Length = 372 Score = 29.6 bits (65), Expect = 6.5 Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 3/42 (7%) Frame = -1 Query: 278 EAAEYQ-KLLAQ--RLKEQRDRRSESMAKRRSKLSAATKAPA 162 E AE Q KL AQ LKEQ +++E +AK R++ +A +K PA Sbjct: 269 EKAELQAKLDAQGKALKEQLAKQTEELAKLRAEKAAGSKTPA 310
>MX_STRP9 (P16946) Virulence factor-related M protein precursor| Length = 369 Score = 29.6 bits (65), Expect = 6.5 Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 3/42 (7%) Frame = -1 Query: 278 EAAEYQ-KLLAQ--RLKEQRDRRSESMAKRRSKLSAATKAPA 162 E AE Q KL AQ LKEQ +++E +AK R++ +A +K PA Sbjct: 266 EKAELQAKLDAQGKALKEQLAKQTEELAKLRAEKAAGSKTPA 307
>PEPF_MYCPN (P54125) Oligoendopeptidase F homolog (EC 3.4.24.-)| Length = 611 Score = 29.3 bits (64), Expect = 8.5 Identities = 19/63 (30%), Positives = 26/63 (41%) Frame = +2 Query: 17 GTMFTQNSINYNSTTLKVAARFISSNKVLETLSPL*LITKDCKHLKQRQPEPWWQQTAST 196 GT+ + +S L RF+SS L L + L+ D QPEPW + A Sbjct: 538 GTLVGKKLSAGDSNMLAAYKRFLSSGSTLPPLETIKLLGIDLT-----QPEPWQEAHAEL 592 Query: 197 SSW 205 W Sbjct: 593 KRW 595
>R1AB_PEDV7 (Q91AV2) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p9; p87; p195 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2; Unknown protein 1; 3C-like Length = 6781 Score = 29.3 bits (64), Expect = 8.5 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = -1 Query: 434 SYVNTYRRTFLNKKGKKVSKAPKIQRLV 351 +Y +TY TFL+ KV++ PKI++ V Sbjct: 179 TYCSTYEHTFLDGTAMKVARTPKIKKNV 206 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,923,566 Number of Sequences: 219361 Number of extensions: 896094 Number of successful extensions: 2880 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 2761 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2848 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4929664480 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
