ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags38c15 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK111924.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-C03, full insert sequence Length = 1356 Score = 287 bits (145), Expect = 2e-74 Identities = 274/317 (86%) Strand = Plus / Minus Query: 278 ccctttaccatcagcggcgtcgaagtaaaagaaattcttgattggattgcccttacaaga 337 |||||||||||||||||||||| | || |||||||||||||| |||| ||||||| ||| Sbjct: 1065 ccctttaccatcagcggcgtcgtaatagaagaaattcttgatcggatcacccttaccaga 1006 Query: 338 tattgacttgatcacctcctgaccaagaatgccaccaaggattgcacatacaggaggatg 397 ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1005 tattgacttaatcacctcctgaccaagaatgccgccaaggattgcacatacaggaggatg 946 Query: 398 ttcctttttcccagctgctagaagccgttccaggagagacgtcggaactttagactcgtc 457 || ||| || |||||||||| ||||||||||||||||| || |||| || |||||| Sbjct: 945 ttgcttctttccagctgctaaaagccgttccaggagagcagtaggaatttgagactcact 886 Query: 458 caaagacattctatcacacatatccttcttccgagccaaaagtgcgggtagatcagaaag 517 ||||||||| |||||||||| |||||| || ||||||||| ||| ||| |||||||||| Sbjct: 885 taaagacattttatcacacatgtccttcctcagagccaaaactgcaggtcgatcagaaag 826 Query: 518 tgatgtctcaccagggtcgcgcccttcagatgattcataactttccaagactctcatcgc 577 ||||| ||||| || | ||| ||||||||||| |||||| | |||| |||||||| || Sbjct: 825 tgatgcctcacaagcattgcggccttcagatgactcataattctccagtactctcatggc 766 Query: 578 gtagtacagtttagttg 594 ||||||||||||||| Sbjct: 765 aaagtacagtttagttg 749
>gb|AY104635.1| Zea mays PCO115798 mRNA sequence Length = 1324 Score = 224 bits (113), Expect = 3e-55 Identities = 251/297 (84%) Strand = Plus / Minus Query: 261 gggatgtcctccatgacccctttaccatcagcggcgtcgaagtaaaagaaattcttgatt 320 ||||| ||||| ||||| |||||||| ||||| | ||||| || ||||||||||||| | Sbjct: 1092 gggatatcctcgatgacacctttaccgtcagccacatcgaaatagaagaaattcttgact 1033 Query: 321 ggattgcccttacaagatattgacttgatcacctcctgaccaagaatgccaccaaggatt 380 |||| |||||| || ||||| || ||||||||||||||||||||||| ||||||||||| Sbjct: 1032 ggatcgcccttgcaggatatcgatttgatcacctcctgaccaagaataccaccaaggata 973 Query: 381 gcacatacaggaggatgttcctttttcccagctgctagaagccgttccaggagagacgtc 440 ||||||||||||||||| ||||| || ||||||||||| || ||||||| ||||| || Sbjct: 972 gcacatacaggaggatgctccttctttccagctgctagcagtcgttccacgagagtagta 913 Query: 441 ggaactttagactcgtccaaagacattctatcacacatatccttcttccgagccaaaagt 500 |||| |||||| | |||||||||| ||||||||||||||||| ||||||||| || | Sbjct: 912 ggaatacgagactcattcaaagacattttatcacacatatccttcctccgagccagaact 853 Query: 501 gcgggtagatcagaaagtgatgtctcaccagggtcgcgcccttcagatgattcataa 557 || || ||||||||||| ||| || |||||| ||||||||||||| |||||||| Sbjct: 852 gcatctatatcagaaagtgttgtttcgccagggctgcgcccttcagataattcataa 796
>gb|AC135569.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0018F17, complete sequence Length = 104291 Score = 121 bits (61), Expect = 3e-24 Identities = 76/81 (93%) Strand = Plus / Minus Query: 355 cctgaccaagaatgccaccaaggattgcacatacaggaggatgttcctttttcccagctg 414 |||||||||||||||| |||||||||||||||||||||||||||| ||| || ||||||| Sbjct: 54866 cctgaccaagaatgccgccaaggattgcacatacaggaggatgttgcttctttccagctg 54807 Query: 415 ctagaagccgttccaggagag 435 ||| ||||||||||||||||| Sbjct: 54806 ctaaaagccgttccaggagag 54786 Score = 97.6 bits (49), Expect = 4e-17 Identities = 73/81 (90%) Strand = Plus / Minus Query: 278 ccctttaccatcagcggcgtcgaagtaaaagaaattcttgattggattgcccttacaaga 337 |||||||||||||||||||||| | || |||||||||||||| |||| ||||||| ||| Sbjct: 55907 ccctttaccatcagcggcgtcgtaatagaagaaattcttgatcggatcacccttaccaga 55848 Query: 338 tattgacttgatcacctcctg 358 ||||||||| ||||||||||| Sbjct: 55847 tattgacttaatcacctcctg 55827 Score = 75.8 bits (38), Expect = 2e-10 Identities = 80/94 (85%) Strand = Plus / Minus Query: 464 cattctatcacacatatccttcttccgagccaaaagtgcgggtagatcagaaagtgatgt 523 |||| |||||||||| |||||| || ||||||||| ||| ||| ||||||||||||||| Sbjct: 54680 cattttatcacacatgtccttcctcagagccaaaactgcaggtcgatcagaaagtgatgc 54621 Query: 524 ctcaccagggtcgcgcccttcagatgattcataa 557 ||||| || | ||| ||||||||||| |||||| Sbjct: 54620 ctcacaagcattgcggccttcagatgactcataa 54587
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 121 bits (61), Expect = 3e-24 Identities = 76/81 (93%) Strand = Plus / Minus Query: 355 cctgaccaagaatgccaccaaggattgcacatacaggaggatgttcctttttcccagctg 414 |||||||||||||||| |||||||||||||||||||||||||||| ||| || ||||||| Sbjct: 17080910 cctgaccaagaatgccgccaaggattgcacatacaggaggatgttgcttctttccagctg 17080851 Query: 415 ctagaagccgttccaggagag 435 ||| ||||||||||||||||| Sbjct: 17080850 ctaaaagccgttccaggagag 17080830 Score = 97.6 bits (49), Expect = 4e-17 Identities = 73/81 (90%) Strand = Plus / Minus Query: 278 ccctttaccatcagcggcgtcgaagtaaaagaaattcttgattggattgcccttacaaga 337 |||||||||||||||||||||| | || |||||||||||||| |||| ||||||| ||| Sbjct: 17081951 ccctttaccatcagcggcgtcgtaatagaagaaattcttgatcggatcacccttaccaga 17081892 Query: 338 tattgacttgatcacctcctg 358 ||||||||| ||||||||||| Sbjct: 17081891 tattgacttaatcacctcctg 17081871 Score = 75.8 bits (38), Expect = 2e-10 Identities = 80/94 (85%) Strand = Plus / Minus Query: 464 cattctatcacacatatccttcttccgagccaaaagtgcgggtagatcagaaagtgatgt 523 |||| |||||||||| |||||| || ||||||||| ||| ||| ||||||||||||||| Sbjct: 17080724 cattttatcacacatgtccttcctcagagccaaaactgcaggtcgatcagaaagtgatgc 17080665 Query: 524 ctcaccagggtcgcgcccttcagatgattcataa 557 ||||| || | ||| ||||||||||| |||||| Sbjct: 17080664 ctcacaagcattgcggccttcagatgactcataa 17080631
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 121 bits (61), Expect = 3e-24 Identities = 76/81 (93%) Strand = Plus / Minus Query: 355 cctgaccaagaatgccaccaaggattgcacatacaggaggatgttcctttttcccagctg 414 |||||||||||||||| |||||||||||||||||||||||||||| ||| || ||||||| Sbjct: 17175591 cctgaccaagaatgccgccaaggattgcacatacaggaggatgttgcttctttccagctg 17175532 Query: 415 ctagaagccgttccaggagag 435 ||| ||||||||||||||||| Sbjct: 17175531 ctaaaagccgttccaggagag 17175511 Score = 97.6 bits (49), Expect = 4e-17 Identities = 73/81 (90%) Strand = Plus / Minus Query: 278 ccctttaccatcagcggcgtcgaagtaaaagaaattcttgattggattgcccttacaaga 337 |||||||||||||||||||||| | || |||||||||||||| |||| ||||||| ||| Sbjct: 17176632 ccctttaccatcagcggcgtcgtaatagaagaaattcttgatcggatcacccttaccaga 17176573 Query: 338 tattgacttgatcacctcctg 358 ||||||||| ||||||||||| Sbjct: 17176572 tattgacttaatcacctcctg 17176552 Score = 75.8 bits (38), Expect = 2e-10 Identities = 80/94 (85%) Strand = Plus / Minus Query: 464 cattctatcacacatatccttcttccgagccaaaagtgcgggtagatcagaaagtgatgt 523 |||| |||||||||| |||||| || ||||||||| ||| ||| ||||||||||||||| Sbjct: 17175405 cattttatcacacatgtccttcctcagagccaaaactgcaggtcgatcagaaagtgatgc 17175346 Query: 524 ctcaccagggtcgcgcccttcagatgattcataa 557 ||||| || | ||| ||||||||||| |||||| Sbjct: 17175345 ctcacaagcattgcggccttcagatgactcataa 17175312
>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome Length = 4222334 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 299 gaagtaaaagaaattcttgatt 320 |||||||||||||||||||||| Sbjct: 3700816 gaagtaaaagaaattcttgatt 3700795
>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome Length = 4222645 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 299 gaagtaaaagaaattcttgatt 320 |||||||||||||||||||||| Sbjct: 3700977 gaagtaaaagaaattcttgatt 3700956
>emb|BX571868.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 10/17 Length = 345829 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 300 aagtaaaagaaattcttgattg 321 |||||||||||||||||||||| Sbjct: 139072 aagtaaaagaaattcttgattg 139093
>gb|AE015927.1| Clostridium tetani E88, complete genome Length = 2799251 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Minus Query: 299 gaagtaaaagaaattcttgattggat 324 ||||||||||||| |||||||||||| Sbjct: 1581474 gaagtaaaagaaactcttgattggat 1581449
>dbj|D28169.1|BACSPOIIID Bacillus thuringiensis Bt spoIIID gene for Bt SpoIIID, complete cds Length = 1507 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 299 gaagtaaaagaaattcttgatt 320 |||||||||||||||||||||| Sbjct: 586 gaagtaaaagaaattcttgatt 607
>gb|AC132454.3| Mus musculus BAC clone RP23-127P22 from chromosome 19, complete sequence Length = 225152 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 atgtcaattctgttcaatgca 60 ||||||||||||||||||||| Sbjct: 24036 atgtcaattctgttcaatgca 24016
>gb|AC121855.3| Mus musculus BAC clone RP24-97C18 from chromosome 6, complete sequence Length = 192062 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 605 cagatccttccagggcacagagata 629 ||||||||||||||| ||||||||| Sbjct: 68324 cagatccttccaggggacagagata 68348
>gb|AC006269.13| Homo sapiens chromosome , clone RP11-515E23, complete sequence Length = 167229 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 105 acaacaacaaaaacgctaaaatgctaagt 133 ||||||||||||| |||| |||||||||| Sbjct: 77801 acaacaacaaaaaagctataatgctaagt 77773
>gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome Length = 2650701 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 cctttaccatcagcggcgtc 298 |||||||||||||||||||| Sbjct: 2342442 cctttaccatcagcggcgtc 2342461
>gb|AC140047.8| Mus musculus chromosome 17, clone RP23-233F10, complete sequence Length = 186632 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 398 ttcctttttcccagctgctagaag 421 ||||||||||||||||||| |||| Sbjct: 90094 ttcctttttcccagctgctggaag 90071
>emb|Z79603.1|CEM163 Caenorhabditis elegans Cosmid M163, complete sequence Length = 43245 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 ctaaaatgctaagttgagtt 139 |||||||||||||||||||| Sbjct: 29572 ctaaaatgctaagttgagtt 29553
>gb|CP000237.1| Neorickettsia sennetsu strain Miyayama, complete genome Length = 859006 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 gaagtaaaagaaattcttga 318 |||||||||||||||||||| Sbjct: 294927 gaagtaaaagaaattcttga 294946
>gb|AC096584.1| Homo sapiens BAC clone RP11-663G9 from 2, complete sequence Length = 15672 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 263 gatgtcctccatgacccctttaccatca 290 ||||||||||||||| | |||||||||| Sbjct: 9359 gatgtcctccatgacacatttaccatca 9332 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,508,119 Number of Sequences: 3902068 Number of extensions: 5508119 Number of successful extensions: 114944 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 114784 Number of HSP's gapped (non-prelim): 158 length of query: 629 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 606 effective length of database: 17,143,297,704 effective search space: 10388838408624 effective search space used: 10388838408624 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
