ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags37n13 |
|---|---|
| Clone Library Name | barley_pub |
>CBP23_HORVU (P52711) Serine carboxypeptidase II-3 precursor (EC 3.4.16.6)| (CP-MII.3) [Contains: Serine carboxypeptidase II-3 chain A; Serine carboxypeptidase II-3 chain B] Length = 516 Score = 51.2 bits (121), Expect = 6e-07 Identities = 23/23 (100%), Positives = 23/23 (100%) Frame = -3 Query: 340 ALVLVQNFLAGKALPDCKECEQD 272 ALVLVQNFLAGKALPDCKECEQD Sbjct: 494 ALVLVQNFLAGKALPDCKECEQD 516
>Y751_METJA (Q58161) Hypothetical protein MJ0751| Length = 278 Score = 32.0 bits (71), Expect = 0.39 Identities = 17/51 (33%), Positives = 24/51 (47%) Frame = -3 Query: 265 KKXRFYTKR*YTSRFHRLYHLIQYKKQAKSSKVRYRNPSSTHALRRPCNCR 113 KK + + +R F +L I+YK + V Y NPS T L C C+ Sbjct: 178 KKSKNFRRRLNRWNFSKLQFFIEYKAKWDGLDVEYVNPSRTSKLCPICGCK 228
>MT2C_RABIT (P80290) Metallothionein-2C (MT-2C) (Metallothionein-IIC) (MT-IIC)| Length = 62 Score = 31.2 bits (69), Expect = 0.67 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Frame = +1 Query: 190 SCTESNDTTCETCWCTIF*C-KTXFSFANPVRILCSQGALC 309 SCT +N TC+ C CT C K+ S P C+QG +C Sbjct: 13 SCTCANSCTCKACKCTS--CKKSCCSCCPPGCAKCAQGCIC 51
>MT2A_RABIT (P18055) Metallothionein-2A (MT-2A) (Metallothionein-IIA) (MT-IIA)| Length = 62 Score = 31.2 bits (69), Expect = 0.67 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Frame = +1 Query: 190 SCTESNDTTCETCWCTIF*C-KTXFSFANPVRILCSQGALC 309 SCT +N TC+ C CT C K+ S P C+QG +C Sbjct: 13 SCTCANSCTCKACKCTS--CKKSCCSCCPPGCAKCAQGCIC 51
>MT3_HORSE (P37360) Metallothionein-3 (MT-3) (Metallothionein-III) (MT-III)| (Growth inhibitory factor) (GIF) Length = 68 Score = 30.4 bits (67), Expect = 1.1 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Frame = +1 Query: 190 SCTESNDTTCETCWCTIF*CKTXFSFANPVRI-LCSQGALCLXGNSGQAQA 339 SCT S + CE C CT CK P C++ +C G +A+A Sbjct: 13 SCTCSGECKCEGCKCTS--CKKSCCSCCPAECEKCAKDCVCKGGEGAEAEA 61
>MT2H_BOVIN (P55943) Metallothionein-II, hippocampal (MT-2)| Length = 61 Score = 30.4 bits (67), Expect = 1.1 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Frame = +1 Query: 190 SCTESNDTTCETCWCTIF*CKTXFSFANPVRIL-CSQGALC 309 SCT +N TC+ C C CK PV C+QG +C Sbjct: 12 SCTCANSCTCKACKCAS--CKKSCCSCCPVGCAKCAQGCIC 50
>YR871_MIMIV (Q5UP41) Hypothetical protein R871| Length = 561 Score = 30.0 bits (66), Expect = 1.5 Identities = 17/40 (42%), Positives = 25/40 (62%) Frame = -3 Query: 247 TKR*YTSRFHRLYHLIQYKKQAKSSKVRYRNPSSTHALRR 128 +KR +S+ H+ +KK+ KS K RYR+PSS +L R Sbjct: 161 SKRDKSSKRHK-----SHKKKDKSHKKRYRSPSSDRSLSR 195
>MT3_HUMAN (P25713) Metallothionein-3 (MT-3) (Metallothionein-III) (MT-III)| (Growth inhibitory factor) (GIF) (GIFB) Length = 68 Score = 29.3 bits (64), Expect = 2.5 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Frame = +1 Query: 190 SCTESNDTTCETCWCTIF*CKTXFSFANPVRI-LCSQGALCLXGNSGQAQA 339 SCT ++ CE C CT CK P C++ +C G + +A+A Sbjct: 13 SCTCADSCKCEGCKCTS--CKKSCCSCCPAECEKCAKDCVCKGGEAAEAEA 61
>MT1G_HUMAN (P13640) Metallothionein-1G (MT-1G) (Metallothionein-IG) (MT-IG)| (Metallothionein-1K) (MT-1K) Length = 62 Score = 29.3 bits (64), Expect = 2.5 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%) Frame = +1 Query: 187 VSCTESNDTTCETCWCTIF*CKTXFSFANPVRIL-CSQGALC 309 VSCT ++ C+ C CT CK PV C+QG +C Sbjct: 12 VSCTCASSCKCKECKCTS--CKKSCCSCCPVGCAKCAQGCIC 51
>MT1_CERAE (P02797) Metallothionein-1 (MT-1) (Metallothionein-I) (MT-I)| Length = 61 Score = 28.9 bits (63), Expect = 3.3 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%) Frame = +1 Query: 187 VSCTESNDTTCETCWCTIF*CKTXFSFANPVRIL-CSQGALC 309 VSCT ++ C+ C CT CK PV C+QG +C Sbjct: 11 VSCTCADSCKCKECKCTS--CKKSCCSCCPVGCAKCAQGCVC 50
>MT1I_HUMAN (P80295) Metallothionein-1I (MT-1I) (Metallothionein-II)| Length = 61 Score = 28.9 bits (63), Expect = 3.3 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%) Frame = +1 Query: 187 VSCTESNDTTCETCWCTIF*CKTXFSFANPVRIL-CSQGALC 309 VSCT + C+ C CT CK PV C+QG +C Sbjct: 11 VSCTCAGSCKCKECKCTS--CKKSCCSCCPVGCAKCAQGCIC 50
>DAL5_YEAST (P15365) Allantoate permease| Length = 543 Score = 28.5 bits (62), Expect = 4.3 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 3/57 (5%) Frame = +3 Query: 3 RSILWRHQYCNMPFW---HRCSYLTNYTIHFPIYMKAFADLQLHGLRSAWVDDGFLY 164 R + W+ YC P + ++ + M DL++HG + +WV F + Sbjct: 75 RKLRWKIDYCMFPLMCILYAVQFMDKISTSSAAVMGLRTDLKMHGDQYSWVTSAFYF 131
>MT1F_PIG (P79378) Metallothionein-1F (MT-1F) (Metallothionein-IF) (MT-IF)| Length = 61 Score = 28.5 bits (62), Expect = 4.3 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Frame = +1 Query: 190 SCTESNDTTCETCWCTIF*CKTXFSFANPVRIL-CSQGALC 309 SCT + TC+ C CT CK P C+QG +C Sbjct: 12 SCTCAGSCTCKACRCTS--CKKSCCSCCPAGCAKCAQGCIC 50
>MT1E_PIG (P79431) Metallothionein-1E (MT-1E) (Metallothionein-IE) (MT-IE)| Length = 61 Score = 28.5 bits (62), Expect = 4.3 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Frame = +1 Query: 190 SCTESNDTTCETCWCTIF*CKTXFSFANPVRIL-CSQGALC 309 SC+ + TC+ C CT CK PV C+QG +C Sbjct: 12 SCSCAGSCTCKACRCTS--CKKSCCSCCPVGCAKCAQGCIC 50
>ASLB_ECOLI (P25550) Probable arylsulfatase-activating protein aslB| Length = 411 Score = 28.5 bits (62), Expect = 4.3 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +3 Query: 54 CSYLTNYTIHFPIYMKAFADLQLHG 128 C+ Y H P Y+KA ADL HG Sbjct: 371 CAGYQRYFRHLPPYLKAMADLLAHG 395
>TDCG_ECOLI (P42630) L-serine dehydratase tdcG (EC 4.3.1.17) (L-serine| deaminase) (SDH) Length = 454 Score = 28.5 bits (62), Expect = 4.3 Identities = 16/46 (34%), Positives = 20/46 (43%) Frame = +1 Query: 16 GGTSIATCHFGIDVHT*QITPYTFLSI*KHLLTCSYMVCGVHGLMM 153 GG + HFG+ PY F S + L C Y + GLMM Sbjct: 148 GGFIVEEEHFGLSHDVETSVPYDFHSAGELLKMCDYNGLSISGLMM 193
>MT_AMBME (O42152) Metallothionein (MT) (AnMT)| Length = 60 Score = 28.1 bits (61), Expect = 5.6 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 1/46 (2%) Frame = +1 Query: 190 SCTESNDTTCETCWCTIF*CKTXFSFANPVRI-LCSQGALCLXGNS 324 SC+ + CE C CT CK P C QG +C G+S Sbjct: 10 SCSCAGSCKCENCKCTS--CKKSCCSCCPSECEKCGQGCVCKGGSS 53
>MT2_MESAU (P17808) Metallothionein-2 (MT-2) (Metallothionein-II) (MT-II)| Length = 61 Score = 28.1 bits (61), Expect = 5.6 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Frame = +1 Query: 190 SCTESNDTTCETCWCTIF*CKTXFSFANPVRIL-CSQGALC 309 SC+ S C+ C CT CK PV CSQG +C Sbjct: 12 SCSCSGSCKCKECKCTT--CKKSCCSCCPVGCAKCSQGCVC 50
>MT1_RAT (P02803) Metallothionein-1 (MT-1) (Metallothionein-I) (MT-I)| Length = 61 Score = 28.1 bits (61), Expect = 5.6 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Frame = +1 Query: 190 SCTESNDTTCETCWCTIF*CKTXFSFANPVRI-LCSQGALC 309 SCT S+ C+ C CT CK PV C+QG +C Sbjct: 12 SCTCSSSCGCKNCKCTS--CKKSCCSCCPVGCSKCAQGCVC 50
>MT1F_HUMAN (P04733) Metallothionein-1F (MT-1F) (Metallothionein-IF) (MT-IF)| Length = 61 Score = 28.1 bits (61), Expect = 5.6 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%) Frame = +1 Query: 187 VSCTESNDTTCETCWCTIF*CKTXFSFANPVRI-LCSQGALC 309 VSCT + C+ C CT CK PV C+QG +C Sbjct: 11 VSCTCAGSCKCKECKCTS--CKKSCCSCCPVGCSKCAQGCVC 50
>MT1_MOUSE (P02802) Metallothionein-1 (MT-1) (Metallothionein-I) (MT-I)| Length = 61 Score = 27.7 bits (60), Expect = 7.4 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Frame = +1 Query: 190 SCTESNDTTCETCWCTIF*CKTXFSFANPVRI-LCSQGALC 309 SCT ++ C+ C CT CK PV C+QG +C Sbjct: 12 SCTCTSSCACKNCKCTS--CKKSCCSCCPVGCSKCAQGCVC 50
>VE1_HPV40 (P36727) Replication protein E1 (EC 3.6.1.-) (ATP-dependent| helicase E1) Length = 647 Score = 27.3 bits (59), Expect = 9.6 Identities = 9/26 (34%), Positives = 19/26 (73%) Frame = -2 Query: 152 IINPCTPQTM*LQVSKCFHIDRKVYG 75 +I+ C+P+T +++ KC ++ K+YG Sbjct: 185 VIDHCSPRTQLIELFKCKDLNAKLYG 210
>MT2_PONPY (Q5NVS0) Metallothionein-2 (MT-2) (Metallothionein-II) (MT-II)| Length = 61 Score = 27.3 bits (59), Expect = 9.6 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Frame = +1 Query: 190 SCTESNDTTCETCWCTIF*CKTXFSFANPVRIL-CSQGALC 309 SCT + C+ C CT CK PV C+QG +C Sbjct: 12 SCTCAGSCKCKECKCTS--CKKSCCSCCPVGCAKCAQGCIC 50
>MT2_MACFA (P68303) Metallothionein-2 (MT-2) (Metallothionein-II) (MT-II)| Length = 61 Score = 27.3 bits (59), Expect = 9.6 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Frame = +1 Query: 190 SCTESNDTTCETCWCTIF*CKTXFSFANPVRIL-CSQGALC 309 SCT + C+ C CT CK PV C+QG +C Sbjct: 12 SCTCAGSCKCKECKCTS--CKKSCCSCCPVGCAKCAQGCIC 50
>MT2_HUMAN (P02795) Metallothionein-2 (MT-2) (Metallothionein-II) (MT-II)| (Metallothionein-2A) Length = 61 Score = 27.3 bits (59), Expect = 9.6 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Frame = +1 Query: 190 SCTESNDTTCETCWCTIF*CKTXFSFANPVRIL-CSQGALC 309 SCT + C+ C CT CK PV C+QG +C Sbjct: 12 SCTCAGSCKCKECKCTS--CKKSCCSCCPVGCAKCAQGCIC 50
>MT2_CERAE (P68304) Metallothionein-2 (MT-2) (Metallothionein-II) (MT-II)| Length = 61 Score = 27.3 bits (59), Expect = 9.6 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Frame = +1 Query: 190 SCTESNDTTCETCWCTIF*CKTXFSFANPVRIL-CSQGALC 309 SCT + C+ C CT CK PV C+QG +C Sbjct: 12 SCTCAGSCKCKECKCTS--CKKSCCSCCPVGCAKCAQGCIC 50
>MT2_CANFA (Q9XST5) Metallothionein-2 (MT-2) (Metallothionein-II) (MT-II)| Length = 61 Score = 27.3 bits (59), Expect = 9.6 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Frame = +1 Query: 190 SCTESNDTTCETCWCTIF*CKTXFSFANPVRIL-CSQGALC 309 SCT + C+ C CT CK PV C+QG +C Sbjct: 12 SCTCAGSCKCKECRCTS--CKKSCCSCCPVGCAKCAQGCIC 50
>MT2A_PIG (P79379) Metallothionein-2A (MT-2A) (Metallothionein-IIA) (MT-IIA)| Length = 61 Score = 27.3 bits (59), Expect = 9.6 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Frame = +1 Query: 190 SCTESNDTTCETCWCTIF*CKTXFSFANPVRIL-CSQGALC 309 SCT + C+ C CT CK PV C+QG +C Sbjct: 12 SCTCAGSCKCKDCKCTS--CKKSCCSCCPVGCAKCAQGCIC 50
>MT1_CANFA (O19000) Metallothionein-1 (MT-1) (Metallothionein-I) (MT-I)| Length = 61 Score = 27.3 bits (59), Expect = 9.6 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Frame = +1 Query: 190 SCTESNDTTCETCWCTIF*CKTXFSFANPVRIL-CSQGALC 309 SCT + C+ C CT CK PV C+QG +C Sbjct: 12 SCTCAGSCKCKECKCTS--CKKSCCSCCPVGCAKCAQGCIC 50 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,161,884 Number of Sequences: 219361 Number of extensions: 805956 Number of successful extensions: 1774 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 1733 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1773 length of database: 80,573,946 effective HSP length: 89 effective length of database: 61,050,817 effective search space used: 1465219608 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
