ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags38c12 |
|---|---|
| Clone Library Name | barley_pub |
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 142 bits (359), Expect = 6e-34 Identities = 66/101 (65%), Positives = 83/101 (82%) Frame = -3 Query: 634 AAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSR 455 AA+RG R ERPPR F S+R YVGN+PW +D+RL Q+FSEHG+VV+A +VYDRETGRSR Sbjct: 212 AARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSR 271 Query: 454 GFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 332 GFGFVTMAS+ ++ AI+ LDGQ +DGR +RVNVA +R +R Sbjct: 272 GFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDRSRR 312 Score = 72.8 bits (177), Expect = 8e-13 Identities = 33/82 (40%), Positives = 55/82 (67%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 + +VGNLP+ + L ++F + G V A ++Y+R+T +SRGFGFVTM++ E+ + A+ Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEM 196 Query: 397 LDGQEMDGRPLRVNVAAERPQR 332 + +++GR L VN AA R +R Sbjct: 197 YNRYDVNGRLLTVNKAARRGER 218
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 142 bits (357), Expect = 1e-33 Identities = 67/101 (66%), Positives = 81/101 (80%) Frame = -3 Query: 634 AAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSR 455 AA RGSR ER PR + +FR YVGNLPW ++ RL Q+FSEHG+VV A +VYDRETGRSR Sbjct: 226 AAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSR 285 Query: 454 GFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 332 GFGFVTM+ ++L+ AISALDGQ ++GR +RVNVA ERP R Sbjct: 286 GFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPR 326 Score = 70.5 bits (171), Expect = 4e-12 Identities = 33/82 (40%), Positives = 52/82 (63%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 + +VGNL + L +F + G V A ++Y+RET +SRGFGFVTM+S ++ ++A+ Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210 Query: 397 LDGQEMDGRPLRVNVAAERPQR 332 + +++GR L VN AA R R Sbjct: 211 FNRYDLNGRLLTVNKAAPRGSR 232
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 137 bits (345), Expect = 3e-32 Identities = 63/101 (62%), Positives = 82/101 (81%) Frame = -3 Query: 634 AAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSR 455 AA RGSR ER PR F ++R YVGN+PW +D+RL Q+FSEHG+VV+A +V+DRE+GRSR Sbjct: 173 AAPRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSR 232 Query: 454 GFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 332 GFGFVTM+S+ ++ AI+ LDGQ +DGR +RVN A ERP+R Sbjct: 233 GFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEERPRR 273 Score = 77.0 bits (188), Expect = 4e-14 Identities = 37/82 (45%), Positives = 53/82 (64%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 + +VGNLP+ + L Q+F + G V A ++Y+RET RSRGFGFVTM++ E+ D A+ Sbjct: 98 KLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVEL 157 Query: 397 LDGQEMDGRPLRVNVAAERPQR 332 +++GR L VN AA R R Sbjct: 158 YSQYDLNGRLLTVNKAAPRGSR 179
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 133 bits (334), Expect = 5e-31 Identities = 65/103 (63%), Positives = 79/103 (76%) Frame = -3 Query: 634 AAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSR 455 AA RGS P F S R YVGNLPW + SRL Q+FSEHG+VV+A +V DRETGRSR Sbjct: 131 AAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSR 190 Query: 454 GFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF 326 GFGFVTM+S+ +++ AI+ALDGQ +DGR +RVNVA ERP+R F Sbjct: 191 GFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEERPRRAF 233 Score = 82.4 bits (202), Expect = 1e-15 Identities = 43/99 (43%), Positives = 61/99 (61%), Gaps = 2/99 (2%) Frame = -3 Query: 622 GSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGF 443 G PP + + +VGNLP+ + +L +F G V A ++Y+RET RSRGFGF Sbjct: 45 GQGFSEPPEEA----KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGF 100 Query: 442 VTMASKEDLDSAISALDGQEMDGRPLRVNVAAER--PQR 332 VTM++ E+ + A+ L+G +MDGR L VN AA R P+R Sbjct: 101 VTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPER 139
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 105 bits (262), Expect = 1e-22 Identities = 50/94 (53%), Positives = 69/94 (73%) Frame = -3 Query: 607 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 428 R R SS R YVGNL W +D L ++FSE G VV+A +VYDR++GRSRGFGFVT +S Sbjct: 198 RGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSS 257 Query: 427 KEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF 326 ++++ AI +L+G ++DGR +RV+ A ERP+R F Sbjct: 258 SKEVNDAIDSLNGVDLDGRSIRVSAAEERPRRQF 291 Score = 82.4 bits (202), Expect = 1e-15 Identities = 43/107 (40%), Positives = 63/107 (58%), Gaps = 3/107 (2%) Frame = -3 Query: 613 VERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTM 434 V PR F+ + +VGNLP+ + + L +F G V ++YD+ TGRSRGFGFVTM Sbjct: 77 VAEQPR-FSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTM 135 Query: 433 ASKEDLDSAISALDGQEMDGRPLRVNVA---AERPQRGF*CGAAAES 302 ++KE++++A +G E+DGR +RVN A+R F G S Sbjct: 136 STKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNS 182
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 104 bits (260), Expect = 2e-22 Identities = 50/94 (53%), Positives = 69/94 (73%) Frame = -3 Query: 607 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 428 R R SS R YVGNL W +D L ++FSE G VV+A +VYDR++GRSRGFGFVT +S Sbjct: 199 RGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSS 258 Query: 427 KEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF 326 ++++ AI +L+G ++DGR +RV+ A ERP+R F Sbjct: 259 AKEVNDAIDSLNGIDLDGRSIRVSAAEERPRRQF 292 Score = 80.5 bits (197), Expect = 4e-15 Identities = 42/107 (39%), Positives = 63/107 (58%), Gaps = 3/107 (2%) Frame = -3 Query: 613 VERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTM 434 V PR F+ + +VGNLP+ + + L +F G V ++YD+ +GRSRGFGFVTM Sbjct: 78 VAEQPR-FSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTM 136 Query: 433 ASKEDLDSAISALDGQEMDGRPLRVNVA---AERPQRGF*CGAAAES 302 ++KE++++A +G E+DGR +RVN A+R F G S Sbjct: 137 STKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNS 183
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 99.8 bits (247), Expect = 6e-21 Identities = 47/87 (54%), Positives = 65/87 (74%) Frame = -3 Query: 592 FASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLD 413 F SS R YVGNL W + L +FSE G+VV+A +VYDR++GRSRGFGFVT +S E+++ Sbjct: 190 FDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVN 249 Query: 412 SAISALDGQEMDGRPLRVNVAAERPQR 332 +AI +LDG +++GR +RV+ A RP R Sbjct: 250 NAIESLDGVDLNGRAIRVSPAEARPPR 276 Score = 84.7 bits (208), Expect = 2e-16 Identities = 38/81 (46%), Positives = 56/81 (69%) Frame = -3 Query: 598 RQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKED 419 R F+ + +VGNL + A+ + L ++F G V ++YD+ TGRSRGFGFVTM+SKE+ Sbjct: 81 RNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEE 140 Query: 418 LDSAISALDGQEMDGRPLRVN 356 +++A +G E+DGR LRVN Sbjct: 141 VEAACQQFNGYELDGRALRVN 161
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 99.8 bits (247), Expect = 6e-21 Identities = 47/87 (54%), Positives = 65/87 (74%) Frame = -3 Query: 592 FASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLD 413 F SS R YVGNL W + L +FSE G+VV+A +VYDR++GRSRGFGFVT +S E+++ Sbjct: 184 FDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVN 243 Query: 412 SAISALDGQEMDGRPLRVNVAAERPQR 332 +AI +LDG +++GR +RV+ A RP R Sbjct: 244 NAIESLDGVDLNGRAIRVSPAEARPPR 270 Score = 88.6 bits (218), Expect = 1e-17 Identities = 39/81 (48%), Positives = 57/81 (70%) Frame = -3 Query: 598 RQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKED 419 R F+ + +VGNLP+ A+ + L ++F G V ++YD+ TGRSRGFGFVTM+SKE+ Sbjct: 81 RNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEE 140 Query: 418 LDSAISALDGQEMDGRPLRVN 356 +++A +G E+DGR LRVN Sbjct: 141 VEAACQQFNGYELDGRALRVN 161
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 98.2 bits (243), Expect = 2e-20 Identities = 43/86 (50%), Positives = 64/86 (74%) Frame = -3 Query: 586 SSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSA 407 S R YVGNL W +D L +F+E G+VV A ++YDR++GRS+GFGFVT++S +++ A Sbjct: 255 SGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKA 314 Query: 406 ISALDGQEMDGRPLRVNVAAERPQRG 329 I++L+G ++DGR +RV+ A RP RG Sbjct: 315 INSLNGADLDGRQIRVSEAEARPPRG 340 Score = 83.2 bits (204), Expect = 6e-16 Identities = 39/94 (41%), Positives = 59/94 (62%) Frame = -3 Query: 613 VERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTM 434 VER F+ + +VGNL + + ++L Q+F G V ++YD+ TGRSRGFGFVTM Sbjct: 90 VER--NSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTM 147 Query: 433 ASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 332 ++ ++++A +G E +GRPLRVN P+R Sbjct: 148 STAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKR 181
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 97.1 bits (240), Expect = 4e-20 Identities = 44/85 (51%), Positives = 61/85 (71%) Frame = -3 Query: 586 SSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSA 407 S R YVGNL W +D L +FSE G+VV A ++YDR++GRS+GFGFVT S +++ +A Sbjct: 202 SGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNA 261 Query: 406 ISALDGQEMDGRPLRVNVAAERPQR 332 I +LDG ++DGR +RV+ A RP R Sbjct: 262 IKSLDGADLDGRQIRVSEAEARPPR 286 Score = 91.7 bits (226), Expect = 2e-18 Identities = 41/93 (44%), Positives = 63/93 (67%), Gaps = 2/93 (2%) Frame = -3 Query: 604 PPRQ--FASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMA 431 PP++ F++ + +VGNLP+ + ++L Q+F G V ++YD+ TGRSRGFGFVTM+ Sbjct: 81 PPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMS 140 Query: 430 SKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 332 S ++++A +G E+DGRPLRVN P+R Sbjct: 141 SVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKR 173
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 86.7 bits (213), Expect = 5e-17 Identities = 39/84 (46%), Positives = 56/84 (66%) Frame = -3 Query: 580 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 401 +R +VG L W +D L FS++GEV+++ I+ DRETGRSRGFGFVT ++ + AI Sbjct: 8 YRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIE 67 Query: 400 ALDGQEMDGRPLRVNVAAERPQRG 329 ++GQ++DGR + VN A R G Sbjct: 68 GMNGQDLDGRSITVNEAQSRGSGG 91
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 85.9 bits (211), Expect = 9e-17 Identities = 39/84 (46%), Positives = 54/84 (64%) Frame = -3 Query: 580 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 401 +R +VG L W D L Q FS+ G++ ++ I+ DRETGRSRGFGFVT ++ + AI Sbjct: 6 YRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIE 65 Query: 400 ALDGQEMDGRPLRVNVAAERPQRG 329 ++GQE+DGR + VN A R G Sbjct: 66 GMNGQELDGRNITVNEAQSRGSGG 89
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 85.1 bits (209), Expect = 2e-16 Identities = 38/80 (47%), Positives = 55/80 (68%) Frame = -3 Query: 580 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 401 +R +VG L W D+ L + FS+ GEV+++ I+ DRETGRSRGFGFVT ++ + AI Sbjct: 6 YRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAID 65 Query: 400 ALDGQEMDGRPLRVNVAAER 341 ++G+E+DGR + VN A R Sbjct: 66 EMNGKELDGRTITVNEAQSR 85
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 84.3 bits (207), Expect = 3e-16 Identities = 37/84 (44%), Positives = 56/84 (66%) Frame = -3 Query: 580 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 401 +R +VG L W +D L F+++G+V+++ I+ DRETGRSRGFGFVT ++ + AI Sbjct: 8 YRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIE 67 Query: 400 ALDGQEMDGRPLRVNVAAERPQRG 329 ++GQ++DGR + VN A R G Sbjct: 68 GMNGQDLDGRSITVNEAQSRGSGG 91
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 83.2 bits (204), Expect = 6e-16 Identities = 37/80 (46%), Positives = 54/80 (67%) Frame = -3 Query: 580 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 401 +R +VG L W ++ L FS+ GE+V++ I+ DRETGRSRGFGFVT ++ + AI Sbjct: 8 YRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIE 67 Query: 400 ALDGQEMDGRPLRVNVAAER 341 ++GQ++DGR + VN A R Sbjct: 68 GMNGQDLDGRSITVNEAQSR 87
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 82.8 bits (203), Expect = 8e-16 Identities = 38/82 (46%), Positives = 56/82 (68%) Frame = -3 Query: 583 SFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 404 S + ++G L W +D+ L F+ G+VV+A ++ DRETGRSRGFGFV + +AI Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93 Query: 403 SALDGQEMDGRPLRVNVAAERP 338 S +DG+E++GR +RVN A +RP Sbjct: 94 SEMDGKELNGRHIRVNPANDRP 115
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 82.0 bits (201), Expect = 1e-15 Identities = 36/80 (45%), Positives = 55/80 (68%) Frame = -3 Query: 580 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 401 +R +VG L W + L Q F+ G+V+++ ++ DRETGRSRGFGFVT +S++ + AI Sbjct: 8 YRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIE 67 Query: 400 ALDGQEMDGRPLRVNVAAER 341 ++G+E+DGR + VN A R Sbjct: 68 NMNGKELDGRNITVNQAQSR 87
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 81.3 bits (199), Expect = 2e-15 Identities = 37/84 (44%), Positives = 55/84 (65%) Frame = -3 Query: 580 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 401 +R +VG L W D L + FS+ G+V+++ I+ DRE+GRSRGFGFVT ++ + AI Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65 Query: 400 ALDGQEMDGRPLRVNVAAERPQRG 329 ++G+E+DGR + VN A R G Sbjct: 66 EMNGKELDGRVITVNEAQSRGSGG 89
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 80.9 bits (198), Expect = 3e-15 Identities = 41/85 (48%), Positives = 52/85 (61%) Frame = -3 Query: 610 ERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMA 431 ER + R YVGNLP+ S+L ++F+E G V N IVYDR T RSRGF FVTM Sbjct: 104 ERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMG 163 Query: 430 SKEDLDSAISALDGQEMDGRPLRVN 356 S E+ AI DG ++ GR ++VN Sbjct: 164 SVEEAKEAIRLFDGSQVGGRTVKVN 188 Score = 77.4 bits (189), Expect = 3e-14 Identities = 34/82 (41%), Positives = 54/82 (65%) Frame = -3 Query: 586 SSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSA 407 S + YV NL W L F++ ++A ++YDR +GRSRGFGF+T +S E ++SA Sbjct: 215 SPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSA 274 Query: 406 ISALDGQEMDGRPLRVNVAAER 341 + ++ E++GRPLR+NVA ++ Sbjct: 275 LDTMNEVELEGRPLRLNVAGQK 296
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 80.5 bits (197), Expect = 4e-15 Identities = 35/80 (43%), Positives = 54/80 (67%) Frame = -3 Query: 580 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 401 +R +VG L W + L F+ +GE++++ ++ DRETGRSRGFGFVT +S+ + AI Sbjct: 8 YRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIE 67 Query: 400 ALDGQEMDGRPLRVNVAAER 341 ++G+E+DGR + VN A R Sbjct: 68 NMNGKELDGRNITVNQAQSR 87
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 74.7 bits (182), Expect = 2e-13 Identities = 38/92 (41%), Positives = 56/92 (60%) Frame = -3 Query: 607 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 428 R P S +VGN+P++A + +L +FSE G VV+ +VYDRETG+ +G+GF Sbjct: 7 RDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQD 66 Query: 427 KEDLDSAISALDGQEMDGRPLRVNVAAERPQR 332 +E SA+ L+G+E GR LRV+ AA + Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAASEKNK 98
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 74.7 bits (182), Expect = 2e-13 Identities = 38/92 (41%), Positives = 56/92 (60%) Frame = -3 Query: 607 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 428 R P S +VGN+P++A + +L +FSE G VV+ +VYDRETG+ +G+GF Sbjct: 7 RDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQD 66 Query: 427 KEDLDSAISALDGQEMDGRPLRVNVAAERPQR 332 +E SA+ L+G+E GR LRV+ AA + Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAASEKNK 98
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 73.6 bits (179), Expect = 5e-13 Identities = 38/92 (41%), Positives = 56/92 (60%) Frame = -3 Query: 607 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 428 R P S +VGN+P++A + +L +FSE G VV+ +VYDRETG+ +G+GF Sbjct: 7 RDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66 Query: 427 KEDLDSAISALDGQEMDGRPLRVNVAAERPQR 332 +E SA+ L+G+E GR LRV+ AA + Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAASEKNK 98
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 73.6 bits (179), Expect = 5e-13 Identities = 38/92 (41%), Positives = 56/92 (60%) Frame = -3 Query: 607 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 428 R P S +VGN+P++A + +L +FSE G VV+ +VYDRETG+ +G+GF Sbjct: 7 RDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66 Query: 427 KEDLDSAISALDGQEMDGRPLRVNVAAERPQR 332 +E SA+ L+G+E GR LRV+ AA + Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAASEKNK 98
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 73.6 bits (179), Expect = 5e-13 Identities = 38/92 (41%), Positives = 56/92 (60%) Frame = -3 Query: 607 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 428 R P S +VGN+P++A + +L +FSE G VV+ +VYDRETG+ +G+GF Sbjct: 7 RDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66 Query: 427 KEDLDSAISALDGQEMDGRPLRVNVAAERPQR 332 +E SA+ L+G+E GR LRV+ AA + Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAASEKNK 98
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 73.6 bits (179), Expect = 5e-13 Identities = 38/92 (41%), Positives = 56/92 (60%) Frame = -3 Query: 607 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 428 R P S +VGN+P++A + +L +FSE G VV+ +VYDRETG+ +G+GF Sbjct: 7 RDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQD 66 Query: 427 KEDLDSAISALDGQEMDGRPLRVNVAAERPQR 332 +E SA+ L+G+E GR LRV+ AA + Sbjct: 67 QETALSAMRNLNGREFSGRALRVDNAASEKNK 98
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 72.8 bits (177), Expect = 8e-13 Identities = 37/80 (46%), Positives = 49/80 (61%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 YVGNL + ++ L +F+E+G V + DRETGR RGFGFV + + + +AI ALD Sbjct: 4 YVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEALD 63 Query: 391 GQEMDGRPLRVNVAAERPQR 332 G E GR L+VN A R R Sbjct: 64 GAEWMGRDLKVNKAKPRENR 83
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 72.8 bits (177), Expect = 8e-13 Identities = 36/92 (39%), Positives = 59/92 (64%), Gaps = 3/92 (3%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 + +VG L + + L Q+FS++G++ +V DRET RSRGFGFVT + +D A+ A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 397 LDGQEMDGRPLRVNVA---AERPQRGF*CGAA 311 ++G+ +DGR +RV+ A ++ RG+ G+A Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSA 98
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 72.8 bits (177), Expect = 8e-13 Identities = 36/92 (39%), Positives = 59/92 (64%), Gaps = 3/92 (3%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 + +VG L + + L Q+FS++G++ +V DRET RSRGFGFVT + +D A+ A Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 397 LDGQEMDGRPLRVNVA---AERPQRGF*CGAA 311 ++G+ +DGR +RV+ A ++ RG+ G+A Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSA 98
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 72.8 bits (177), Expect = 8e-13 Identities = 36/92 (39%), Positives = 59/92 (64%), Gaps = 3/92 (3%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 + +VG L + + L Q+FS++G++ +V DRET RSRGFGFVT + +D A+ A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 397 LDGQEMDGRPLRVNVA---AERPQRGF*CGAA 311 ++G+ +DGR +RV+ A ++ RG+ G+A Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSA 98
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 72.8 bits (177), Expect = 8e-13 Identities = 36/92 (39%), Positives = 59/92 (64%), Gaps = 3/92 (3%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 + +VG L + + L Q+FS++G++ +V DRET RSRGFGFVT + +D A+ A Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 397 LDGQEMDGRPLRVNVA---AERPQRGF*CGAA 311 ++G+ +DGR +RV+ A ++ RG+ G+A Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSA 98
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 72.8 bits (177), Expect = 8e-13 Identities = 36/92 (39%), Positives = 59/92 (64%), Gaps = 3/92 (3%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 + +VG L + + L Q+FS++G++ +V DRET RSRGFGFVT + +D A+ A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 397 LDGQEMDGRPLRVNVA---AERPQRGF*CGAA 311 ++G+ +DGR +RV+ A ++ RG+ G+A Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSA 98
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 71.6 bits (174), Expect = 2e-12 Identities = 35/83 (42%), Positives = 52/83 (62%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 R YVGN+P + L + EHG + A ++YD+ +GRSR FGFVTM + ED ++ I Sbjct: 85 RLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEK 144 Query: 397 LDGQEMDGRPLRVNVAAERPQRG 329 L+ E+ GR ++VN+ E+P G Sbjct: 145 LNDTEIGGRKIKVNI-TEKPLEG 166 Score = 63.5 bits (153), Expect = 5e-10 Identities = 30/79 (37%), Positives = 50/79 (63%) Frame = -3 Query: 586 SSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSA 407 S ++ Y+GNL + L FSE G+V+ A + T +S GFGFV+ +S+E++++A Sbjct: 182 SPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAA 241 Query: 406 ISALDGQEMDGRPLRVNVA 350 I AL+ ++G+ +RVN A Sbjct: 242 IQALNNSVLEGQKIRVNKA 260
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 71.2 bits (173), Expect = 2e-12 Identities = 34/64 (53%), Positives = 47/64 (73%) Frame = -3 Query: 520 FSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 341 FS +GEV+ + I+ DRET RSRGFGFVT +++E + SAI ++G+E+DGR + VN A R Sbjct: 7 FSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQSR 66 Query: 340 PQRG 329 RG Sbjct: 67 GGRG 70
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 70.9 bits (172), Expect = 3e-12 Identities = 30/81 (37%), Positives = 54/81 (66%) Frame = -3 Query: 583 SFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 404 +F +VG+L +D L F + ++ +++D +TG SRG+GFV+ S++D +A+ Sbjct: 160 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAM 219 Query: 403 SALDGQEMDGRPLRVNVAAER 341 ++ GQ+++GRPLR+N AA+R Sbjct: 220 DSMQGQDLNGRPLRINWAAKR 240 Score = 32.0 bits (71), Expect = 1.6 Identities = 22/78 (28%), Positives = 33/78 (42%) Frame = -3 Query: 574 AYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISAL 395 AY+GN+P A ++ L+ +F G + D + +G F+ + E I AL Sbjct: 342 AYIGNIPHFATEADLIPLFQNFG------FILDFKHYPEKGCCFIKYDTHEQAAVCIVAL 395 Query: 394 DGQEMDGRPLRVNVAAER 341 GR LR ER Sbjct: 396 ANFPFQGRNLRTGWGKER 413
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 70.1 bits (170), Expect = 5e-12 Identities = 30/97 (30%), Positives = 59/97 (60%) Frame = -3 Query: 628 QRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGF 449 +R +++ +P + + +VG L W +D L Q F E+G +V A ++ D ++GRS+G+ Sbjct: 247 ERPAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGY 306 Query: 448 GFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERP 338 G+V + E +A++A +E+DGR + ++++ RP Sbjct: 307 GYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRP 343 Score = 46.2 bits (108), Expect = 8e-05 Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 2/83 (2%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA-- 398 +VGNL + A + L F G++ + + D ++GR +GFG+VT + D+DSA Sbjct: 369 FVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFS---DIDSAKKCVE 425 Query: 397 LDGQEMDGRPLRVNVAAERPQRG 329 ++G + GRP R++ + R G Sbjct: 426 MNGHFIAGRPCRLDFSTPRTGGG 448
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 69.3 bits (168), Expect = 9e-12 Identities = 29/78 (37%), Positives = 48/78 (61%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 +VG L W +D L + F G V+ A ++Y+R T RSRG+G+V +K + AI + Sbjct: 171 FVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQ 230 Query: 391 GQEMDGRPLRVNVAAERP 338 G+E+DGRP+ +++ +P Sbjct: 231 GKEIDGRPINCDMSTSKP 248 Score = 67.4 bits (163), Expect = 3e-11 Identities = 29/78 (37%), Positives = 52/78 (66%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 ++GNL + A+ + ++F++HGEVV+ I ET + +GFG+V ++ ED A+ AL Sbjct: 270 FLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQ 329 Query: 391 GQEMDGRPLRVNVAAERP 338 G+ +D RP+R++ ++ RP Sbjct: 330 GEYIDNRPVRLDFSSPRP 347
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 68.2 bits (165), Expect = 2e-11 Identities = 30/78 (38%), Positives = 51/78 (65%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 + ++G L ++ + L Q F+++G + +V DRET RSRGFGFVT + +D A+ A Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65 Query: 397 LDGQEMDGRPLRVNVAAE 344 ++G+ +DGR +RV+ A + Sbjct: 66 MNGKSVDGRQIRVDQAGK 83
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 66.2 bits (160), Expect = 8e-11 Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 2/85 (2%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 + +VG L + ++ L FS G + +V DRET RSRGFGF+T + E A+ A Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66 Query: 397 LDGQEMDGRPLRVNVAAE--RPQRG 329 ++G+ +DGR +RV+ A + R RG Sbjct: 67 MNGESLDGRQIRVDHAGKSARGSRG 91
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 65.9 bits (159), Expect = 1e-10 Identities = 33/82 (40%), Positives = 51/82 (62%) Frame = -3 Query: 583 SFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 404 S + Y+G L ++ L FS V A ++ ++ TGRSRG+GFV S++ +SAI Sbjct: 30 STKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAI 89 Query: 403 SALDGQEMDGRPLRVNVAAERP 338 SA++GQE++G + VNVA + P Sbjct: 90 SAMNGQELNGFNISVNVAKDWP 111
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 65.5 bits (158), Expect = 1e-10 Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 2/90 (2%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 + +VG L + ++ L FS G + +V DRET RSRGFGF+T + E A+ A Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66 Query: 397 LDGQEMDGRPLRVNVAAE--RPQRGF*CGA 314 ++G+ +DGR +RV+ A + R RG GA Sbjct: 67 MNGESLDGRQIRVDHAGKSARGTRGGGFGA 96
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 63.5 bits (153), Expect = 5e-10 Identities = 31/83 (37%), Positives = 48/83 (57%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 R YVG+L + + L +F G++ N ++ D +TGRS+G+GF+T + E A+ Sbjct: 264 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 323 Query: 397 LDGQEMDGRPLRVNVAAERPQRG 329 L+G E+ GRP+RV ER G Sbjct: 324 LNGFELAGRPMRVGHVTERLDGG 346
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 63.2 bits (152), Expect = 6e-10 Identities = 30/83 (36%), Positives = 47/83 (56%) Frame = -3 Query: 589 ASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDS 410 A R YVG+L + + L +F G + + ++ D ETGRS+G+GF+T + E Sbjct: 247 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKK 306 Query: 409 AISALDGQEMDGRPLRVNVAAER 341 A+ L+G E+ GRP++V ER Sbjct: 307 ALEQLNGFELAGRPMKVGHVTER 329
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 63.2 bits (152), Expect = 6e-10 Identities = 30/83 (36%), Positives = 47/83 (56%) Frame = -3 Query: 589 ASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDS 410 A R YVG+L + + L +F G + + ++ D ETGRS+G+GF+T + E Sbjct: 247 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKK 306 Query: 409 AISALDGQEMDGRPLRVNVAAER 341 A+ L+G E+ GRP++V ER Sbjct: 307 ALEQLNGFELAGRPMKVGHVTER 329
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 61.2 bits (147), Expect = 2e-09 Identities = 33/86 (38%), Positives = 45/86 (52%) Frame = -3 Query: 607 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 428 RPP V NL ++ L ++F ++G V + I DR T SRGF FV Sbjct: 5 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64 Query: 427 KEDLDSAISALDGQEMDGRPLRVNVA 350 K D + A+ A+DG +DGR LRV +A Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRVQMA 90
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 61.2 bits (147), Expect = 2e-09 Identities = 38/131 (29%), Positives = 67/131 (51%), Gaps = 1/131 (0%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNAT-IVYDRETGRSRGFGFVTMASKEDLDSAISAL 395 ++GNL + ++ L FS G ++ I+ D +TG S+G+ F+ AS + D+AI A+ Sbjct: 103 FIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAM 162 Query: 394 DGQEMDGRPLRVNVAAERPQRGF*CGAAAESMAWRFSWTHGNTAEMLLQKTEACHHLKLP 215 +GQ + RP+ V+ A ++ +G G+AAE + A+ L + + H L Sbjct: 163 NGQYLCNRPITVSYAFKKDSKGERHGSAAERLL---------AAQNPLSQADRPHQLFAD 213 Query: 214 H*PPDAGSPPI 182 PP + P+ Sbjct: 214 APPPPSAPNPV 224 Score = 59.3 bits (142), Expect = 9e-09 Identities = 30/75 (40%), Positives = 47/75 (62%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 YVG L + + L ++F + G VVN + DR TG+ +G+GFV S+ED D AI ++ Sbjct: 16 YVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMN 75 Query: 391 GQEMDGRPLRVNVAA 347 ++ G+P+RVN A+ Sbjct: 76 MIKLYGKPIRVNKAS 90
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 61.2 bits (147), Expect = 2e-09 Identities = 33/86 (38%), Positives = 45/86 (52%) Frame = -3 Query: 607 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 428 RPP V NL ++ L ++F ++G V + I DR T SRGF FV Sbjct: 4 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 63 Query: 427 KEDLDSAISALDGQEMDGRPLRVNVA 350 K D + A+ A+DG +DGR LRV +A Sbjct: 64 KRDAEDAMDAMDGAVLDGRELRVQMA 89
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 61.2 bits (147), Expect = 2e-09 Identities = 33/86 (38%), Positives = 45/86 (52%) Frame = -3 Query: 607 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 428 RPP V NL ++ L ++F ++G V + I DR T SRGF FV Sbjct: 4 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 63 Query: 427 KEDLDSAISALDGQEMDGRPLRVNVA 350 K D + A+ A+DG +DGR LRV +A Sbjct: 64 KRDAEDAMDAMDGAVLDGRELRVQMA 89
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 61.2 bits (147), Expect = 2e-09 Identities = 33/86 (38%), Positives = 45/86 (52%) Frame = -3 Query: 607 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 428 RPP V NL ++ L ++F ++G V + I DR T SRGF FV Sbjct: 4 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 63 Query: 427 KEDLDSAISALDGQEMDGRPLRVNVA 350 K D + A+ A+DG +DGR LRV +A Sbjct: 64 KRDAEDAMDAMDGAVLDGRELRVQMA 89
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 61.2 bits (147), Expect = 2e-09 Identities = 33/86 (38%), Positives = 45/86 (52%) Frame = -3 Query: 607 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 428 RPP V NL ++ L ++F ++G V + I DR T SRGF FV Sbjct: 4 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 63 Query: 427 KEDLDSAISALDGQEMDGRPLRVNVA 350 K D + A+ A+DG +DGR LRV +A Sbjct: 64 KRDAEDAMDAMDGAVLDGRELRVQMA 89
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 61.2 bits (147), Expect = 2e-09 Identities = 30/80 (37%), Positives = 50/80 (62%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 Y+ N +D RL ++FS G ++ ++ D +TGRSRGFGFV + E+ A+S ++ Sbjct: 194 YIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMN 252 Query: 391 GQEMDGRPLRVNVAAERPQR 332 G+E++GR + V A +R +R Sbjct: 253 GKEVNGRMIYVGRAQKRIER 272 Score = 53.1 bits (126), Expect = 7e-07 Identities = 28/80 (35%), Positives = 48/80 (60%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 YV NL +D RL + FS +G + +A ++ E G S+GFGFV +S E+ A++ ++ Sbjct: 297 YVKNLDDGIDDDRLRKEFSPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMN 354 Query: 391 GQEMDGRPLRVNVAAERPQR 332 G+ + +PL V +A + +R Sbjct: 355 GRIVSTKPLYVALAQRKEER 374 Score = 39.3 bits (90), Expect = 0.010 Identities = 24/86 (27%), Positives = 42/86 (48%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 ++ NL ++ L FS G +++ +V D SRG+GFV ++E + AI ++ Sbjct: 102 FIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETQEAANRAIQTMN 159 Query: 391 GQEMDGRPLRVNVAAERPQRGF*CGA 314 G ++ R + V R +R GA Sbjct: 160 GMLLNDRKVFVGHFKSRRERELEYGA 185
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 60.8 bits (146), Expect = 3e-09 Identities = 29/81 (35%), Positives = 47/81 (58%) Frame = -3 Query: 580 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 401 F +VG+L Q + F+ G + +A +V D TG+S+G+GFV+ +K D ++AI Sbjct: 106 FHVFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQ 165 Query: 400 ALDGQEMDGRPLRVNVAAERP 338 + GQ + GR +R N A +P Sbjct: 166 QMGGQWLGGRQIRTNWATRKP 186 Score = 38.9 bits (89), Expect = 0.013 Identities = 21/74 (28%), Positives = 42/74 (56%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 YVGNL ++ ++Q+FS+ G N ++ D T + + FV +A++A++ Sbjct: 10 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMN 67 Query: 391 GQEMDGRPLRVNVA 350 G+++ G+ ++VN A Sbjct: 68 GRKIMGKEVKVNWA 81
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 60.5 bits (145), Expect = 4e-09 Identities = 30/76 (39%), Positives = 45/76 (59%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 + +VG LP+ D+ L + F G++ A ++ DR+TG+SRG+GFVTMA + D A Sbjct: 33 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKD 92 Query: 397 LDGQEMDGRPLRVNVA 350 +DGR VN+A Sbjct: 93 -PNPIIDGRKANVNLA 107
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 59.7 bits (143), Expect = 7e-09 Identities = 29/80 (36%), Positives = 50/80 (62%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 Y+ N +D RL ++FS G ++ ++ D ++GRSRGFGFV + E+ A+S ++ Sbjct: 194 YIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMN 252 Query: 391 GQEMDGRPLRVNVAAERPQR 332 G+E++GR + V A +R +R Sbjct: 253 GKEVNGRMIYVGRAQKRIER 272 Score = 50.8 bits (120), Expect = 3e-06 Identities = 27/80 (33%), Positives = 47/80 (58%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 YV NL +D RL + F +G + +A ++ E G S+GFGFV +S E+ A++ ++ Sbjct: 297 YVKNLDDGIDDDRLRKEFLPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMN 354 Query: 391 GQEMDGRPLRVNVAAERPQR 332 G+ + +PL V +A + +R Sbjct: 355 GRIVSTKPLYVALAQRKEER 374 Score = 38.5 bits (88), Expect = 0.017 Identities = 24/86 (27%), Positives = 41/86 (47%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 ++ NL ++ L FS G +++ +V D SRG+GFV + E + AI ++ Sbjct: 102 FIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTMN 159 Query: 391 GQEMDGRPLRVNVAAERPQRGF*CGA 314 G ++ R + V R +R GA Sbjct: 160 GMLLNDRKVFVGHFKSRRERELEYGA 185
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 59.7 bits (143), Expect = 7e-09 Identities = 28/81 (34%), Positives = 47/81 (58%) Frame = -3 Query: 580 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 401 F +VG+L + + F+ G + +A +V D TG+S+G+GFV+ +K D ++AI Sbjct: 106 FHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQ 165 Query: 400 ALDGQEMDGRPLRVNVAAERP 338 + GQ + GR +R N A +P Sbjct: 166 QMGGQWLGGRQIRTNWATRKP 186 Score = 38.9 bits (89), Expect = 0.013 Identities = 21/74 (28%), Positives = 42/74 (56%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 YVGNL ++ ++Q+FS+ G N ++ D T + + FV +A++A++ Sbjct: 10 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMN 67 Query: 391 GQEMDGRPLRVNVA 350 G+++ G+ ++VN A Sbjct: 68 GRKIMGKEVKVNWA 81
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 59.7 bits (143), Expect = 7e-09 Identities = 28/84 (33%), Positives = 50/84 (59%) Frame = -3 Query: 589 ASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDS 410 ++ F +VG+L + + F+ G++ +A +V D TG+S+G+GFV+ +K D ++ Sbjct: 111 SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAEN 170 Query: 409 AISALDGQEMDGRPLRVNVAAERP 338 AI + GQ + GR +R N A +P Sbjct: 171 AIVHMGGQWLGGRQIRTNWATRKP 194 Score = 33.5 bits (75), Expect = 0.54 Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 15/89 (16%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYD----RETGRSRGFG-----------FVT 437 YVGNL + ++Q+FS+ G + ++ + R S GF FV Sbjct: 12 YVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFVE 71 Query: 436 MASKEDLDSAISALDGQEMDGRPLRVNVA 350 D +A++A++G+++ G+ ++VN A Sbjct: 72 FYEHRDAAAALAAMNGRKILGKEVKVNWA 100
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 59.7 bits (143), Expect = 7e-09 Identities = 28/84 (33%), Positives = 50/84 (59%) Frame = -3 Query: 589 ASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDS 410 ++ F +VG+L + + F+ G++ +A +V D TG+S+G+GFV+ +K D ++ Sbjct: 94 SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAEN 153 Query: 409 AISALDGQEMDGRPLRVNVAAERP 338 AI + GQ + GR +R N A +P Sbjct: 154 AIVHMGGQWLGGRQIRTNWATRKP 177 Score = 35.0 bits (79), Expect = 0.19 Identities = 19/74 (25%), Positives = 42/74 (56%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 YVGNL + ++Q+FS+ G + ++ + + + + FV D +A++A++ Sbjct: 12 YVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMN 69 Query: 391 GQEMDGRPLRVNVA 350 G+++ G+ ++VN A Sbjct: 70 GRKILGKEVKVNWA 83
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 58.9 bits (141), Expect = 1e-08 Identities = 25/78 (32%), Positives = 46/78 (58%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 + ++G L + + L +F ++G +V ++ DRET +SRGF FVT+ S D A Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARD 68 Query: 397 LDGQEMDGRPLRVNVAAE 344 ++G+ +DG+ ++V A + Sbjct: 69 MNGKSLDGKAIKVEQATK 86
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 58.9 bits (141), Expect = 1e-08 Identities = 29/76 (38%), Positives = 45/76 (59%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 + +VG LP+ D+ L + F G++ A ++ DR+TG+SRG+GFVTMA + + A Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71 Query: 397 LDGQEMDGRPLRVNVA 350 +DGR VN+A Sbjct: 72 -PNPIIDGRKANVNLA 86
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 58.5 bits (140), Expect = 2e-08 Identities = 25/78 (32%), Positives = 45/78 (57%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 + ++G L + + L +F ++G +V ++ DRET +SRGF FVT S D A Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68 Query: 397 LDGQEMDGRPLRVNVAAE 344 ++G+ +DG+ ++V A + Sbjct: 69 MNGKSLDGKAIKVEQATK 86
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 58.2 bits (139), Expect = 2e-08 Identities = 25/80 (31%), Positives = 50/80 (62%) Frame = -3 Query: 595 QFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDL 416 ++ S +VG LP++ + ++ +FS++GE+VN +V D++TG+S+GF F+ + Sbjct: 31 EYKHSAWIFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRST 90 Query: 415 DSAISALDGQEMDGRPLRVN 356 A+ +G ++ GR +RV+ Sbjct: 91 VLAVDNFNGIKIKGRTIRVD 110
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 57.8 bits (138), Expect = 3e-08 Identities = 28/80 (35%), Positives = 49/80 (61%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 Y+ N +D RL ++FS G ++ ++ D +GRSRGFGFV + E+ A++ ++ Sbjct: 194 YIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEMN 252 Query: 391 GQEMDGRPLRVNVAAERPQR 332 G+E++GR + V A +R +R Sbjct: 253 GKEVNGRMVYVGRAQKRIER 272 Score = 51.6 bits (122), Expect = 2e-06 Identities = 27/80 (33%), Positives = 47/80 (58%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 YV NL +D RL + FS +G + + ++ E G S+GFGFV +S E+ A++ ++ Sbjct: 297 YVKNLDDGIDDDRLRKEFSPYGTITSTKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMN 354 Query: 391 GQEMDGRPLRVNVAAERPQR 332 G+ + +PL V +A + +R Sbjct: 355 GRIVSTKPLYVALAQRKEER 374 Score = 39.7 bits (91), Expect = 0.008 Identities = 26/86 (30%), Positives = 45/86 (52%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 ++ NL ++ L FS G++++ +V D E G SRG+GFV ++E + AI ++ Sbjct: 102 FIKNLDDSIDNKALYDTFSAFGDILSCKVVCD-EYG-SRGYGFVHFETQEAANRAIQTMN 159 Query: 391 GQEMDGRPLRVNVAAERPQRGF*CGA 314 G ++ R + V R +R GA Sbjct: 160 GMLLNDRKVFVGHFKSRRERELEYGA 185
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 57.8 bits (138), Expect = 3e-08 Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 1/92 (1%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNAT-IVYDRETGRSRGFGFVTMASKEDLDSAISAL 395 +VGNL + ++ L FS G ++ I+ D ++G S+GF F+ AS E D+A+ A+ Sbjct: 103 FVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAM 162 Query: 394 DGQEMDGRPLRVNVAAERPQRGF*CGAAAESM 299 +GQ + R + V+ A +R +G G AAE M Sbjct: 163 NGQFLCNRAITVSYAFKRDSKGERHGTAAERM 194 Score = 53.9 bits (128), Expect = 4e-07 Identities = 28/75 (37%), Positives = 44/75 (58%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 YVG L + +S L ++ + G VV+ + DR T +GFGFV +ED D AI L+ Sbjct: 16 YVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILN 75 Query: 391 GQEMDGRPLRVNVAA 347 ++ G+P++VN A+ Sbjct: 76 MIKLYGKPIKVNKAS 90
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 57.8 bits (138), Expect = 3e-08 Identities = 31/79 (39%), Positives = 48/79 (60%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 R +V N+P++ D L QMF + G++++ I+++ E G S+GFGFVT + D D A Sbjct: 118 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN-ERG-SKGFGFVTFENSADADRAREK 175 Query: 397 LDGQEMDGRPLRVNVAAER 341 L G ++GR + VN A R Sbjct: 176 LHGTVVEGRKIEVNNATAR 194
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 57.8 bits (138), Expect = 3e-08 Identities = 31/79 (39%), Positives = 48/79 (60%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 R +V N+P++ D L QMF + G++++ I+++ E G S+GFGFVT + D D A Sbjct: 122 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN-ERG-SKGFGFVTFENSADADRAREK 179 Query: 397 LDGQEMDGRPLRVNVAAER 341 L G ++GR + VN A R Sbjct: 180 LHGTVVEGRKIEVNNATAR 198
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 57.8 bits (138), Expect = 3e-08 Identities = 31/79 (39%), Positives = 48/79 (60%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 R +V N+P++ D L QMF + G++++ I+++ E G S+GFGFVT + D D A Sbjct: 117 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN-ERG-SKGFGFVTFENSADADRAREK 174 Query: 397 LDGQEMDGRPLRVNVAAER 341 L G ++GR + VN A R Sbjct: 175 LHGTVVEGRKIEVNNATAR 193
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 57.4 bits (137), Expect = 4e-08 Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 4/87 (4%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS- 401 + +VG L W+ L + F G++++ ++ + E+GRSRGFGFVT A +++ + Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67 Query: 400 ---ALDGQEMDGRPLRVNVAAERPQRG 329 LDG+ +D +P ++P++G Sbjct: 68 GPHTLDGRTIDPKPCNPR-TLQKPKKG 93 Score = 44.7 bits (104), Expect = 2e-04 Identities = 17/56 (30%), Positives = 34/56 (60%) Frame = -3 Query: 580 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLD 413 ++ ++G LP ++ L F+ +G+V I+YD+E +SRGFGF++ + ++ Sbjct: 96 YKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 151
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 57.4 bits (137), Expect = 4e-08 Identities = 24/80 (30%), Positives = 50/80 (62%) Frame = -3 Query: 595 QFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDL 416 ++ S ++G LP++ + ++ +FS++GE+VN +V D++TG+S+GF F+ + Sbjct: 31 EYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRST 90 Query: 415 DSAISALDGQEMDGRPLRVN 356 A+ +G ++ GR +RV+ Sbjct: 91 ILAVDNFNGIKIKGRTIRVD 110
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 57.0 bits (136), Expect = 5e-08 Identities = 34/89 (38%), Positives = 51/89 (57%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 +VGNL ++ L FS G++V A V E GRS+G+GFV+ S E D+AI A++ Sbjct: 102 FVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMN 161 Query: 391 GQEMDGRPLRVNVAAERPQRGF*CGAAAE 305 Q + +P+ V+ A +R +G G AE Sbjct: 162 NQFLMNKPITVSYAFKREGKGERHGDIAE 190 Score = 51.2 bits (121), Expect = 3e-06 Identities = 27/76 (35%), Positives = 43/76 (56%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 Y+GNL + DS L ++ + G VVN I DR GFGF ++D++ A L+ Sbjct: 14 YLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQILN 73 Query: 391 GQEMDGRPLRVNVAAE 344 ++ G+P+RVN A++ Sbjct: 74 QVKLFGKPIRVNRASQ 89
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 57.0 bits (136), Expect = 5e-08 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 2/90 (2%) Frame = -3 Query: 607 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 428 RP + YV NLP D L ++F ++G +V I+ D+ TGR RG FV Sbjct: 179 RPGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNK 238 Query: 427 KEDLDSAISALDGQEMDG--RPLRVNVAAE 344 +E+ AISAL+ +G +PL V +A E Sbjct: 239 REEAQEAISALNNVIPEGASQPLTVRLAEE 268
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 56.6 bits (135), Expect = 6e-08 Identities = 24/78 (30%), Positives = 44/78 (56%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 + ++G L + + L +F ++G +V ++ DRET +SRGF FVT S D Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68 Query: 397 LDGQEMDGRPLRVNVAAE 344 ++G+ +DG+ ++V A + Sbjct: 69 MNGKSLDGKAIKVEQATK 86
>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3| Length = 388 Score = 56.2 bits (134), Expect = 8e-08 Identities = 34/85 (40%), Positives = 51/85 (60%) Frame = -3 Query: 580 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 401 F A+VGNL + ++ L F E V + +V D T RSRGFG+V + + L +A+ Sbjct: 94 FTAHVGNLSFDLTENDLGDFFGEG--VTSIRLVIDPLTERSRGFGYVEFETADTLSAAL- 150 Query: 400 ALDGQEMDGRPLRVNVAAERPQRGF 326 AL G+++ GRP+R+ VA P+R F Sbjct: 151 ALSGEDLMGRPVRITVA--EPRRSF 173
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 56.2 bits (134), Expect = 8e-08 Identities = 29/100 (29%), Positives = 55/100 (55%) Frame = -3 Query: 631 AQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRG 452 A+ G+R + P Y+ N +D RL +F + G ++ ++ D E+G+S+G Sbjct: 181 AELGARAKEFPN-------VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKG 232 Query: 451 FGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 332 FGFV+ ED A+ ++G+E++G+ + V A ++ +R Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272 Score = 53.5 bits (127), Expect = 5e-07 Identities = 29/80 (36%), Positives = 48/80 (60%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 YV NL +D RL + FS G + +A ++ E GRS+GFGFV +S E+ A++ ++ Sbjct: 297 YVKNLDDGIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMN 354 Query: 391 GQEMDGRPLRVNVAAERPQR 332 G+ + +PL V +A + +R Sbjct: 355 GRIVATKPLYVALAQRKEER 374 Score = 40.0 bits (92), Expect = 0.006 Identities = 27/89 (30%), Positives = 44/89 (49%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 +V NL + L S G +++ +V D E G S+G+GFV + E + AI ++ Sbjct: 102 FVKNLDKSINNKALYDTVSAFGNILSCNVVCD-ENG-SKGYGFVHFETHEAAERAIKKMN 159 Query: 391 GQEMDGRPLRVNVAAERPQRGF*CGAAAE 305 G ++GR + V R +R GA A+ Sbjct: 160 GMLLNGRKVFVGQFKSRKEREAELGARAK 188
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 56.2 bits (134), Expect = 8e-08 Identities = 25/80 (31%), Positives = 49/80 (61%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 Y+ N +D RL ++F + G ++ ++ D E+G+S+GFGFV+ ED A+ ++ Sbjct: 194 YIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252 Query: 391 GQEMDGRPLRVNVAAERPQR 332 G+E++G+ + V A ++ +R Sbjct: 253 GKELNGKQIYVGRAQKKVER 272 Score = 53.1 bits (126), Expect = 7e-07 Identities = 29/80 (36%), Positives = 48/80 (60%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 YV NL +D RL + FS G + +A ++ E GRS+GFGFV +S E+ A++ ++ Sbjct: 297 YVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMN 354 Query: 391 GQEMDGRPLRVNVAAERPQR 332 G+ + +PL V +A + +R Sbjct: 355 GRIVATKPLYVALAQRKEER 374 Score = 40.4 bits (93), Expect = 0.004 Identities = 26/89 (29%), Positives = 46/89 (51%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 ++ NL ++ L FS G +++ +V D E G S+G+GFV ++E + AI ++ Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKMN 159 Query: 391 GQEMDGRPLRVNVAAERPQRGF*CGAAAE 305 G ++ R + V R +R GA A+ Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAK 188
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 56.2 bits (134), Expect = 8e-08 Identities = 25/80 (31%), Positives = 49/80 (61%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 Y+ N +D RL ++F + G ++ ++ D E+G+S+GFGFV+ ED A+ ++ Sbjct: 194 YIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252 Query: 391 GQEMDGRPLRVNVAAERPQR 332 G+E++G+ + V A ++ +R Sbjct: 253 GKELNGKQIYVGRAQKKVER 272 Score = 53.1 bits (126), Expect = 7e-07 Identities = 29/80 (36%), Positives = 48/80 (60%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 YV NL +D RL + FS G + +A ++ E GRS+GFGFV +S E+ A++ ++ Sbjct: 297 YVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMN 354 Query: 391 GQEMDGRPLRVNVAAERPQR 332 G+ + +PL V +A + +R Sbjct: 355 GRIVATKPLYVALAQRKEER 374 Score = 38.9 bits (89), Expect = 0.013 Identities = 25/89 (28%), Positives = 46/89 (51%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 ++ NL ++ L FS G +++ +V D E G S+G+GFV ++E + AI ++ Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKMN 159 Query: 391 GQEMDGRPLRVNVAAERPQRGF*CGAAAE 305 G ++ R + V + +R GA A+ Sbjct: 160 GMLLNDRKVFVGRFKSQKEREAELGARAK 188
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 55.8 bits (133), Expect = 1e-07 Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 2/90 (2%) Frame = -3 Query: 607 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 428 RP + YV NLP D L ++F ++G +V I+ D+ TG+ RG FV Sbjct: 162 RPGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNK 221 Query: 427 KEDLDSAISALDGQEMDG--RPLRVNVAAE 344 +E+ AISAL+ +G +PL V +A E Sbjct: 222 REEAQEAISALNNVIPEGASQPLTVRLAEE 251
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 55.8 bits (133), Expect = 1e-07 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 2/90 (2%) Frame = -3 Query: 607 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 428 RP + YV NLP D +L +F ++G +V I+ D+ TGR RG FV Sbjct: 204 RPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNK 263 Query: 427 KEDLDSAISALDGQEMDG--RPLRVNVAAE 344 +E+ AISAL+ +G +PL V +A E Sbjct: 264 REEAQEAISALNNVIPEGGSQPLSVRLAQE 293
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 55.8 bits (133), Expect = 1e-07 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 2/90 (2%) Frame = -3 Query: 607 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 428 RP + YV NLP D +L +F ++G +V I+ D+ TGR RG FV Sbjct: 202 RPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNK 261 Query: 427 KEDLDSAISALDGQEMDG--RPLRVNVAAE 344 +E+ AISAL+ +G +PL V +A E Sbjct: 262 REEAQEAISALNNVIPEGGSQPLSVRLAEE 291
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 55.8 bits (133), Expect = 1e-07 Identities = 28/80 (35%), Positives = 46/80 (57%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 +V NL A++S L QMF G V N ++ D T + +GFGFVTM + ++ AI++L+ Sbjct: 280 FVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 339 Query: 391 GQEMDGRPLRVNVAAERPQR 332 G + R L+V+ + + Sbjct: 340 GYRLGDRVLQVSFKTNKTHK 359 Score = 54.7 bits (130), Expect = 2e-07 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 2/94 (2%) Frame = -3 Query: 607 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 428 RP YV LP L Q+FS++G ++ + I+ D+ TG SRG GF+ Sbjct: 116 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDK 175 Query: 427 KEDLDSAISALDGQEMDG--RPLRVNVAAERPQR 332 + + + AI L+GQ+ G P+ V A Q+ Sbjct: 176 RIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209 Score = 47.8 bits (112), Expect = 3e-05 Identities = 23/73 (31%), Positives = 39/73 (53%) Frame = -3 Query: 568 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 389 V LP L +F GE+ + +V D+ TG+S G+GFV +D + AI+ L+G Sbjct: 43 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 102 Query: 388 QEMDGRPLRVNVA 350 + + ++V+ A Sbjct: 103 LRLQTKTIKVSYA 115
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 55.8 bits (133), Expect = 1e-07 Identities = 28/90 (31%), Positives = 49/90 (54%) Frame = -3 Query: 601 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 422 P +S + ++ NL A++ L QMF G V N ++ D T + +GFGFVTM + E Sbjct: 237 PGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYE 296 Query: 421 DLDSAISALDGQEMDGRPLRVNVAAERPQR 332 + AI++L+G + + L+V+ + + Sbjct: 297 EAAMAIASLNGYRLGDKILQVSFKTNKSHK 326 Score = 51.6 bits (122), Expect = 2e-06 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 2/93 (2%) Frame = -3 Query: 607 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 428 RP + Y+ LP + MFS G ++N+ ++ D+ TG SRG F+ Sbjct: 97 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDK 156 Query: 427 KEDLDSAISALDGQEMDG--RPLRVNVAAERPQ 335 + + + AI++ +G + G P+ V AA Q Sbjct: 157 RSEAEEAITSFNGHKPPGSSEPITVKFAANPNQ 189 Score = 49.7 bits (117), Expect = 7e-06 Identities = 24/73 (32%), Positives = 40/73 (54%) Frame = -3 Query: 568 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 389 V LP L +FS GEV +A ++ D+ G S G+GFV + +D + AI+ L+G Sbjct: 24 VNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNG 83 Query: 388 QEMDGRPLRVNVA 350 + + ++V+ A Sbjct: 84 LRLQSKTIKVSYA 96
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 55.8 bits (133), Expect = 1e-07 Identities = 28/80 (35%), Positives = 46/80 (57%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 +V NL A++S L QMF G V N ++ D T + +GFGFVTM + ++ AI++L+ Sbjct: 279 FVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 338 Query: 391 GQEMDGRPLRVNVAAERPQR 332 G + R L+V+ + + Sbjct: 339 GYRLGDRVLQVSFKTNKTHK 358 Score = 54.7 bits (130), Expect = 2e-07 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 2/94 (2%) Frame = -3 Query: 607 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 428 RP YV LP L Q+FS++G ++ + I+ D+ TG SRG GF+ Sbjct: 116 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDK 175 Query: 427 KEDLDSAISALDGQEMDG--RPLRVNVAAERPQR 332 + + + AI L+GQ+ G P+ V A Q+ Sbjct: 176 RIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209 Score = 47.0 bits (110), Expect = 5e-05 Identities = 22/70 (31%), Positives = 38/70 (54%) Frame = -3 Query: 559 LPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEM 380 LP L +F GE+ + +V D+ TG+S G+GFV +D + AI+ L+G + Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105 Query: 379 DGRPLRVNVA 350 + ++V+ A Sbjct: 106 QTKTIKVSYA 115
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 55.8 bits (133), Expect = 1e-07 Identities = 28/80 (35%), Positives = 46/80 (57%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 +V NL A++S L QMF G V N ++ D T + +GFGFVTM + ++ AI++L+ Sbjct: 279 FVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 338 Query: 391 GQEMDGRPLRVNVAAERPQR 332 G + R L+V+ + + Sbjct: 339 GYRLGDRVLQVSFKTNKTHK 358 Score = 54.7 bits (130), Expect = 2e-07 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 2/94 (2%) Frame = -3 Query: 607 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 428 RP YV LP L Q+FS++G ++ + I+ D+ TG SRG GF+ Sbjct: 116 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDK 175 Query: 427 KEDLDSAISALDGQEMDG--RPLRVNVAAERPQR 332 + + + AI L+GQ+ G P+ V A Q+ Sbjct: 176 RIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209 Score = 47.8 bits (112), Expect = 3e-05 Identities = 23/73 (31%), Positives = 39/73 (53%) Frame = -3 Query: 568 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 389 V LP L +F GE+ + +V D+ TG+S G+GFV +D + AI+ L+G Sbjct: 43 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 102 Query: 388 QEMDGRPLRVNVA 350 + + ++V+ A Sbjct: 103 LRLQTKTIKVSYA 115
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 55.8 bits (133), Expect = 1e-07 Identities = 28/80 (35%), Positives = 46/80 (57%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 +V NL A++S L QMF G V N ++ D T + +GFGFVTM + ++ AI++L+ Sbjct: 279 FVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 338 Query: 391 GQEMDGRPLRVNVAAERPQR 332 G + R L+V+ + + Sbjct: 339 GYRLGDRVLQVSFKTNKTHK 358 Score = 54.7 bits (130), Expect = 2e-07 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 2/94 (2%) Frame = -3 Query: 607 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 428 RP YV LP L Q+FS++G ++ + I+ D+ TG SRG GF+ Sbjct: 116 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDK 175 Query: 427 KEDLDSAISALDGQEMDG--RPLRVNVAAERPQR 332 + + + AI L+GQ+ G P+ V A Q+ Sbjct: 176 RIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209 Score = 47.8 bits (112), Expect = 3e-05 Identities = 23/73 (31%), Positives = 39/73 (53%) Frame = -3 Query: 568 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 389 V LP L +F GE+ + +V D+ TG+S G+GFV +D + AI+ L+G Sbjct: 43 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 102 Query: 388 QEMDGRPLRVNVA 350 + + ++V+ A Sbjct: 103 LRLQTKTIKVSYA 115
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 55.5 bits (132), Expect = 1e-07 Identities = 25/80 (31%), Positives = 48/80 (60%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 Y+ N D RL +MF ++G ++ ++ D + G+S+GFGFV+ ED A+ ++ Sbjct: 194 YIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEMN 252 Query: 391 GQEMDGRPLRVNVAAERPQR 332 G++M+G+ + V A ++ +R Sbjct: 253 GKDMNGKSMFVGRAQKKVER 272 Score = 50.8 bits (120), Expect = 3e-06 Identities = 28/80 (35%), Positives = 47/80 (58%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 YV NL +D RL + F G + +A ++ E GRS+GFGFV +S E+ A++ ++ Sbjct: 297 YVKNLDDGIDDERLRKEFLPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMN 354 Query: 391 GQEMDGRPLRVNVAAERPQR 332 G+ + +PL V +A + +R Sbjct: 355 GRIVATKPLYVALAQRKEER 374 Score = 40.4 bits (93), Expect = 0.004 Identities = 26/89 (29%), Positives = 46/89 (51%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 ++ NL ++ L FS G +++ +V D E G S+G+GFV ++E + AI ++ Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIDKMN 159 Query: 391 GQEMDGRPLRVNVAAERPQRGF*CGAAAE 305 G ++ R + V R +R GA A+ Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAK 188
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 55.5 bits (132), Expect = 1e-07 Identities = 28/90 (31%), Positives = 49/90 (54%) Frame = -3 Query: 601 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 422 P +S + ++ NL A++ L QMF G V N ++ D T + +GFGFVTM + E Sbjct: 237 PGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYE 296 Query: 421 DLDSAISALDGQEMDGRPLRVNVAAERPQR 332 + AI++L+G + + L+V+ + + Sbjct: 297 ESAMAIASLNGYRLGDKILQVSFKTNKSHK 326 Score = 50.8 bits (120), Expect = 3e-06 Identities = 25/73 (34%), Positives = 40/73 (54%) Frame = -3 Query: 568 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 389 V LP L +FS GEV +A ++ D+ G S G+GFV + +D + AIS L+G Sbjct: 24 VNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNG 83 Query: 388 QEMDGRPLRVNVA 350 + + ++V+ A Sbjct: 84 LRLQSKTIKVSYA 96 Score = 50.1 bits (118), Expect = 6e-06 Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 2/93 (2%) Frame = -3 Query: 607 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 428 RP + Y+ LP + MFS G ++N+ ++ D+ TG SRG F+ Sbjct: 97 RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDK 156 Query: 427 KEDLDSAISALDGQEMDG--RPLRVNVAAERPQ 335 + + + AI++ G + G P+ V AA Q Sbjct: 157 RSEAEEAITSFIGHKPPGSSEPITVKFAANPNQ 189
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 55.5 bits (132), Expect = 1e-07 Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 7/99 (7%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 + +VG L W L FS++GEVV+ I+ D+ T +SRGFGFV + + +++ Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 397 ----LDGQEMDGRPLR---VNVAAERPQRGF*CGAAAES 302 LDG+ +D +P + RP+ G+ G ++S Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDS 109 Score = 51.6 bits (122), Expect = 2e-06 Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 1/94 (1%) Frame = -3 Query: 610 ERPPRQFAS-SFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTM 434 ++ PR +S S + +VG +P ++ L + F + G V ++YD E R RGFGF+T Sbjct: 102 QKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITF 161 Query: 433 ASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 332 ++ +D A++ + ++ G+ + V A R + Sbjct: 162 EDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRDSK 194
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 55.5 bits (132), Expect = 1e-07 Identities = 25/80 (31%), Positives = 48/80 (60%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 Y+ N +D RL +F + G ++ ++ D E+G+S+GFGFV+ ED A+ ++ Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252 Query: 391 GQEMDGRPLRVNVAAERPQR 332 G+E++G+ + V A ++ +R Sbjct: 253 GKELNGKQIYVGRAQKKVER 272 Score = 53.1 bits (126), Expect = 7e-07 Identities = 29/80 (36%), Positives = 48/80 (60%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 YV NL +D RL + FS G + +A ++ E GRS+GFGFV +S E+ A++ ++ Sbjct: 297 YVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMN 354 Query: 391 GQEMDGRPLRVNVAAERPQR 332 G+ + +PL V +A + +R Sbjct: 355 GRIVATKPLYVALAQRKEER 374 Score = 40.4 bits (93), Expect = 0.004 Identities = 26/89 (29%), Positives = 46/89 (51%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 ++ NL ++ L FS G +++ +V D E G S+G+GFV ++E + AI ++ Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKMN 159 Query: 391 GQEMDGRPLRVNVAAERPQRGF*CGAAAE 305 G ++ R + V R +R GA A+ Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAK 188
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 55.5 bits (132), Expect = 1e-07 Identities = 25/80 (31%), Positives = 48/80 (60%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 Y+ N +D RL +F + G ++ ++ D E+G+S+GFGFV+ ED A+ ++ Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252 Query: 391 GQEMDGRPLRVNVAAERPQR 332 G+E++G+ + V A ++ +R Sbjct: 253 GKELNGKQIYVGRAQKKVER 272 Score = 53.1 bits (126), Expect = 7e-07 Identities = 29/80 (36%), Positives = 48/80 (60%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 YV NL +D RL + FS G + +A ++ E GRS+GFGFV +S E+ A++ ++ Sbjct: 297 YVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMN 354 Query: 391 GQEMDGRPLRVNVAAERPQR 332 G+ + +PL V +A + +R Sbjct: 355 GRIVATKPLYVALAQRKEER 374 Score = 40.4 bits (93), Expect = 0.004 Identities = 26/89 (29%), Positives = 46/89 (51%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 ++ NL ++ L FS G +++ +V D E G S+G+GFV ++E + AI ++ Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKMN 159 Query: 391 GQEMDGRPLRVNVAAERPQRGF*CGAAAE 305 G ++ R + V R +R GA A+ Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAK 188
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 55.5 bits (132), Expect = 1e-07 Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 4/111 (3%) Frame = -3 Query: 622 GSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGF 443 GSR P F L + L ++FS +G + +VYD+ TGRSRGF F Sbjct: 108 GSRANPDPNTCLGVF-----GLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAF 162 Query: 442 VTMASKEDLDSAISALDGQEMDGRPLRVNVA----AERPQRGF*CGAAAES 302 V +D A+ +G E+DGR +RV+ + A P G G S Sbjct: 163 VYFERIDDSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHS 213
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 55.5 bits (132), Expect = 1e-07 Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 4/111 (3%) Frame = -3 Query: 622 GSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGF 443 GSR P F L + L ++FS +G + +VYD+ TGRSRGF F Sbjct: 110 GSRANPDPNTCLGVF-----GLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAF 164 Query: 442 VTMASKEDLDSAISALDGQEMDGRPLRVNVA----AERPQRGF*CGAAAES 302 V +D A+ +G E+DGR +RV+ + A P G G S Sbjct: 165 VYFERIDDSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHS 215
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 55.1 bits (131), Expect = 2e-07 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 2/94 (2%) Frame = -3 Query: 607 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 428 RP YV LP L Q+FS++G ++ + I+ D+ TG SRG GF+ Sbjct: 116 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDK 175 Query: 427 KEDLDSAISALDGQEMDG--RPLRVNVAAERPQR 332 + + + AI L+GQ+ G P+ V A Q+ Sbjct: 176 RIEAEEAIKGLNGQKPSGATEPITVKFANNPSQK 209 Score = 52.8 bits (125), Expect = 9e-07 Identities = 27/90 (30%), Positives = 49/90 (54%) Frame = -3 Query: 601 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 422 P + + +V NL +++S L Q+F G V N ++ D T + +GFGFVTM + + Sbjct: 283 PGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYD 342 Query: 421 DLDSAISALDGQEMDGRPLRVNVAAERPQR 332 + AI++L+G + R L+V+ + + Sbjct: 343 EAAMAIASLNGYRLGDRVLQVSFKTNKAHK 372 Score = 45.8 bits (107), Expect = 1e-04 Identities = 22/73 (30%), Positives = 38/73 (52%) Frame = -3 Query: 568 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 389 V LP +F GE+ + +V D+ TG+S G+GFV +D + AI+ L+G Sbjct: 43 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 102 Query: 388 QEMDGRPLRVNVA 350 + + ++V+ A Sbjct: 103 LRLQTKTIKVSYA 115
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 55.1 bits (131), Expect = 2e-07 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 2/94 (2%) Frame = -3 Query: 607 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 428 RP YV LP L Q+FS++G ++ + I+ D+ TG SRG GF+ Sbjct: 123 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDK 182 Query: 427 KEDLDSAISALDGQEMDG--RPLRVNVAAERPQR 332 + + + AI L+GQ+ G P+ V A Q+ Sbjct: 183 RIEAEEAIKGLNGQKPSGATEPITVKFANNPSQK 216 Score = 52.8 bits (125), Expect = 9e-07 Identities = 27/90 (30%), Positives = 49/90 (54%) Frame = -3 Query: 601 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 422 P + + +V NL +++S L Q+F G V N ++ D T + +GFGFVTM + + Sbjct: 290 PGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYD 349 Query: 421 DLDSAISALDGQEMDGRPLRVNVAAERPQR 332 + AI++L+G + R L+V+ + + Sbjct: 350 EAAMAIASLNGYRLGDRVLQVSFKTNKAHK 379 Score = 45.8 bits (107), Expect = 1e-04 Identities = 22/73 (30%), Positives = 38/73 (52%) Frame = -3 Query: 568 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 389 V LP +F GE+ + +V D+ TG+S G+GFV +D + AI+ L+G Sbjct: 50 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 109 Query: 388 QEMDGRPLRVNVA 350 + + ++V+ A Sbjct: 110 LRLQTKTIKVSYA 122
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 55.1 bits (131), Expect = 2e-07 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 2/94 (2%) Frame = -3 Query: 607 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 428 RP YV LP L Q+FS++G ++ + I+ D+ TG SRG GF+ Sbjct: 128 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDK 187 Query: 427 KEDLDSAISALDGQEMDG--RPLRVNVAAERPQR 332 + + + AI L+GQ+ G P+ V A Q+ Sbjct: 188 RIEAEEAIKGLNGQKPSGATEPITVKFANNPSQK 221 Score = 52.8 bits (125), Expect = 9e-07 Identities = 27/90 (30%), Positives = 49/90 (54%) Frame = -3 Query: 601 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 422 P + + +V NL +++S L Q+F G V N ++ D T + +GFGFVTM + + Sbjct: 295 PGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYD 354 Query: 421 DLDSAISALDGQEMDGRPLRVNVAAERPQR 332 + AI++L+G + R L+V+ + + Sbjct: 355 EAAMAIASLNGYRLGDRVLQVSFKTNKAHK 384 Score = 45.8 bits (107), Expect = 1e-04 Identities = 22/73 (30%), Positives = 38/73 (52%) Frame = -3 Query: 568 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 389 V LP +F GE+ + +V D+ TG+S G+GFV +D + AI+ L+G Sbjct: 55 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 114 Query: 388 QEMDGRPLRVNVA 350 + + ++V+ A Sbjct: 115 LRLQTKTIKVSYA 127
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 55.1 bits (131), Expect = 2e-07 Identities = 31/79 (39%), Positives = 46/79 (58%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 R +V N+P++ D L MF + G V + I+++ E G S+GFGFVTM +D + A Sbjct: 154 RLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFN-ERG-SKGFGFVTMERPQDAERARQE 211 Query: 397 LDGQEMDGRPLRVNVAAER 341 L G ++GR + VN A R Sbjct: 212 LHGSMIEGRKIEVNCATAR 230
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 54.7 bits (130), Expect = 2e-07 Identities = 29/80 (36%), Positives = 47/80 (58%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 YV NL +D RL FS +G + +A ++ D E GRS+GFGFV + + A++ L+ Sbjct: 290 YVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEE-GRSKGFGFVCFNAASEATCAVTELN 348 Query: 391 GQEMDGRPLRVNVAAERPQR 332 G+ + +PL V +A + +R Sbjct: 349 GRVVGSKPLYVALAQRKEER 368 Score = 51.6 bits (122), Expect = 2e-06 Identities = 26/81 (32%), Positives = 50/81 (61%), Gaps = 1/81 (1%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 YV N +D +L + F +G++ + ++ +E G+S+GFGFV + E ++A+ AL+ Sbjct: 186 YVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQALN 244 Query: 391 GQEM-DGRPLRVNVAAERPQR 332 G++M +G+ L V A ++ +R Sbjct: 245 GKDMGEGKSLYVARAQKKAER 265 Score = 43.1 bits (100), Expect = 7e-04 Identities = 21/71 (29%), Positives = 36/71 (50%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 YVG+LP +S L FS G V++ + D T RS G+ +V D + A+ ++ Sbjct: 5 YVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMN 64 Query: 391 GQEMDGRPLRV 359 + +P+R+ Sbjct: 65 FDLVRNKPIRI 75 Score = 40.8 bits (94), Expect = 0.003 Identities = 20/80 (25%), Positives = 43/80 (53%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 ++ NL ++ + FS G +++ + D E G S+G+GFV ++E +++I ++ Sbjct: 93 FIKNLDRAIDNKAIYDTFSAFGNILSCKVATD-EKGNSKGYGFVHFETEEAANTSIDKVN 151 Query: 391 GQEMDGRPLRVNVAAERPQR 332 G ++G+ + V R +R Sbjct: 152 GMLLNGKKVYVGKFIPRKER 171
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 54.7 bits (130), Expect = 2e-07 Identities = 27/80 (33%), Positives = 47/80 (58%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 +V NL +A++S L Q+F G V N ++ D T + +GFGFVTM + ++ AI++L+ Sbjct: 287 FVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLN 346 Query: 391 GQEMDGRPLRVNVAAERPQR 332 G + R L+V+ + + Sbjct: 347 GYRLGERVLQVSFKTSKQHK 366 Score = 53.5 bits (127), Expect = 5e-07 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 2/94 (2%) Frame = -3 Query: 607 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 428 RP YV LP + Q+FS++G ++ + I+ D+ TG SRG GF+ Sbjct: 116 RPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDK 175 Query: 427 KEDLDSAISALDGQEMDG--RPLRVNVAAERPQR 332 + + + AI L+GQ+ G P+ V A Q+ Sbjct: 176 RIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQK 209 Score = 47.4 bits (111), Expect = 4e-05 Identities = 22/73 (30%), Positives = 39/73 (53%) Frame = -3 Query: 568 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 389 V LP +F G++ + +V D+ TG+S G+GFV + D D AI+ L+G Sbjct: 43 VNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNG 102 Query: 388 QEMDGRPLRVNVA 350 ++ + ++V+ A Sbjct: 103 LKLQTKTIKVSYA 115
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 54.7 bits (130), Expect = 2e-07 Identities = 27/80 (33%), Positives = 47/80 (58%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 +V NL +A++S L Q+F G V N ++ D T + +GFGFVTM + ++ AI++L+ Sbjct: 287 FVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLN 346 Query: 391 GQEMDGRPLRVNVAAERPQR 332 G + R L+V+ + + Sbjct: 347 GYRLGERVLQVSFKTSKQHK 366 Score = 53.1 bits (126), Expect = 7e-07 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 2/94 (2%) Frame = -3 Query: 607 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 428 RP YV LP + Q+FS++G ++ + I+ D+ TG SRG GF+ Sbjct: 116 RPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDK 175 Query: 427 KEDLDSAISALDGQEMDG--RPLRVNVAAERPQR 332 + + + AI L+GQ+ G P+ V A Q+ Sbjct: 176 RIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQK 209 Score = 47.4 bits (111), Expect = 4e-05 Identities = 22/73 (30%), Positives = 39/73 (53%) Frame = -3 Query: 568 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 389 V LP +F G++ + +V D+ TG+S G+GFV + D D AI+ L+G Sbjct: 43 VNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNG 102 Query: 388 QEMDGRPLRVNVA 350 ++ + ++V+ A Sbjct: 103 LKLQTKTIKVSYA 115
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 54.7 bits (130), Expect = 2e-07 Identities = 27/80 (33%), Positives = 50/80 (62%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 Y+ NL +D +L +MFSE+G V ++ ++ + + G SRGFGFV ++ E+ A+S ++ Sbjct: 335 YLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMN 393 Query: 391 GQEMDGRPLRVNVAAERPQR 332 G+ + +PL + +A + R Sbjct: 394 GKMIGRKPLYIALAQRKEDR 413 Score = 46.6 bits (109), Expect = 6e-05 Identities = 25/91 (27%), Positives = 45/91 (49%) Frame = -3 Query: 604 PPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASK 425 P + + ++ NL ++ L + FS G +++ + D TGRS+G+GFV + Sbjct: 128 PSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKE 186 Query: 424 EDLDSAISALDGQEMDGRPLRVNVAAERPQR 332 E +AI L+G M+ + + V R +R Sbjct: 187 ESAQAAIDKLNGMLMNDKQVFVGHFIRRQER 217
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 54.7 bits (130), Expect = 2e-07 Identities = 24/80 (30%), Positives = 43/80 (53%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 +VGN+P+ + ++ ++F++ G V +V D ETG +G+GF E A+ L+ Sbjct: 10 FVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKLN 69 Query: 391 GQEMDGRPLRVNVAAERPQR 332 E+ R +RV + P+R Sbjct: 70 NSELGPRKIRVEFPSNDPRR 89
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 54.3 bits (129), Expect = 3e-07 Identities = 26/66 (39%), Positives = 44/66 (66%), Gaps = 1/66 (1%) Frame = -3 Query: 532 LVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNV 353 L ++FS++G + + +IVYD+++ RSRGF FV + +D A +G E+DGR +RV+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 193 Query: 352 A-AERP 338 + +RP Sbjct: 194 SITKRP 199
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 54.3 bits (129), Expect = 3e-07 Identities = 26/66 (39%), Positives = 44/66 (66%), Gaps = 1/66 (1%) Frame = -3 Query: 532 LVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNV 353 L ++FS++G + + +IVYD+++ RSRGF FV + +D A +G E+DGR +RV+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 193 Query: 352 A-AERP 338 + +RP Sbjct: 194 SITKRP 199
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 54.3 bits (129), Expect = 3e-07 Identities = 26/66 (39%), Positives = 44/66 (66%), Gaps = 1/66 (1%) Frame = -3 Query: 532 LVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNV 353 L ++FS++G + + +IVYD+++ RSRGF FV + +D A +G E+DGR +RV+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 193 Query: 352 A-AERP 338 + +RP Sbjct: 194 SITKRP 199
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 54.3 bits (129), Expect = 3e-07 Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 3/98 (3%) Frame = -3 Query: 616 RVERPPRQFASSFRA---YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFG 446 R E+ ++ A F++ YV NL D +L ++FS G V ++ ++ D G S+G G Sbjct: 303 RYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRD-PNGTSKGSG 361 Query: 445 FVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 332 FV A+ E+ A+S L G+ ++ +PL V +A + R Sbjct: 362 FVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDR 399 Score = 53.1 bits (126), Expect = 7e-07 Identities = 27/80 (33%), Positives = 45/80 (56%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 YV NL D L F E+G++ +A ++ D E G+S+GFGFV + +D A+ +L+ Sbjct: 218 YVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLN 276 Query: 391 GQEMDGRPLRVNVAAERPQR 332 G + D + V A ++ +R Sbjct: 277 GHKFDDKEWYVGRAQKKSER 296 Score = 51.2 bits (121), Expect = 3e-06 Identities = 27/78 (34%), Positives = 41/78 (52%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 YVG+L + DS+L F + G VV + D T RS G+G+V + +D AI L+ Sbjct: 39 YVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELN 98 Query: 391 GQEMDGRPLRVNVAAERP 338 + G+P+RV + P Sbjct: 99 YIPLYGKPIRVMYSHRDP 116 Score = 43.5 bits (101), Expect = 5e-04 Identities = 23/80 (28%), Positives = 41/80 (51%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 ++ NL + L FS G +V+ + D +G+S+G+GFV A++E AI L+ Sbjct: 127 FIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKLN 185 Query: 391 GQEMDGRPLRVNVAAERPQR 332 G ++ + + V R +R Sbjct: 186 GMLLNDKQVYVGPFLRRQER 205
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 54.3 bits (129), Expect = 3e-07 Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 2/90 (2%) Frame = -3 Query: 607 RPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMAS 428 RP + YV NLP D +L +F ++G +V I+ D+ TG+ RG FV Sbjct: 187 RPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNK 246 Query: 427 KEDLDSAISALDGQEMDG--RPLRVNVAAE 344 +E+ AISAL+ +G +PL V +A E Sbjct: 247 REEAQEAISALNNVIPEGASQPLTVRLAEE 276
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 54.3 bits (129), Expect = 3e-07 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 7/91 (7%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 + +VG L W L FS++GEVV+ I+ D+ T +SRGFGFV + + +++ Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 397 ----LDGQEMDGRPLR---VNVAAERPQRGF 326 LDG+ +D +P + RP+ G+ Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERSRPREGW 101 Score = 53.1 bits (126), Expect = 7e-07 Identities = 26/99 (26%), Positives = 52/99 (52%) Frame = -3 Query: 628 QRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGF 449 + G + + P + + S + +VG +P ++ L + F+ G V ++YD E R RGF Sbjct: 98 REGWQQKEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGF 157 Query: 448 GFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 332 GF+T ++ +D A++ + ++ G+ + V A R + Sbjct: 158 GFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRDSK 195
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 54.3 bits (129), Expect = 3e-07 Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 7/99 (7%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 + +VG L W L FS++GEVV+ I+ D+ T +SRGFGFV + + +++ Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 397 ----LDGQEMDGRPLR---VNVAAERPQRGF*CGAAAES 302 LDG+ +D +P + RP+ G+ G +++ Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDN 109 Score = 50.8 bits (120), Expect = 3e-06 Identities = 25/91 (27%), Positives = 47/91 (51%) Frame = -3 Query: 604 PPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASK 425 P + S + +VG +P ++ L + F + G V ++YD E R RGFGF+T + Sbjct: 105 PRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDE 164 Query: 424 EDLDSAISALDGQEMDGRPLRVNVAAERPQR 332 + +D A++ + ++ G+ + V A R + Sbjct: 165 QSVDQAVN-MHFHDIMGKKVEVKRAEPRDSK 194
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 53.9 bits (128), Expect = 4e-07 Identities = 27/80 (33%), Positives = 48/80 (60%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 Y+ NL +D +L + FS G + +A ++ E GRS+GFGFV +S E+ A++ ++ Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMN 354 Query: 391 GQEMDGRPLRVNVAAERPQR 332 G+ + +PL V +A + +R Sbjct: 355 GRIVGSKPLYVALAQRKEER 374 Score = 53.5 bits (127), Expect = 5e-07 Identities = 24/80 (30%), Positives = 49/80 (61%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 Y+ N + +D L ++FS+ G+ ++ ++ D G+S+GFGFV+ ED + A+ ++ Sbjct: 194 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMN 252 Query: 391 GQEMDGRPLRVNVAAERPQR 332 G+E+ G+ + V A ++ +R Sbjct: 253 GKEISGKIIFVGRAQKKVER 272
>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I| Length = 219 Score = 53.9 bits (128), Expect = 4e-07 Identities = 29/77 (37%), Positives = 44/77 (57%) Frame = -3 Query: 580 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 401 FR +VGNL D L Q FSE+ +V +V DRE G++RGFGFV+ + A Sbjct: 30 FRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFLKAWR 88 Query: 400 ALDGQEMDGRPLRVNVA 350 +G+ + RP++++ A Sbjct: 89 EKNGKYIGSRPVKLSRA 105
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 53.5 bits (127), Expect = 5e-07 Identities = 24/80 (30%), Positives = 48/80 (60%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 Y+ N +D RL + F ++G ++ ++ D + G+SRGFGFV+ ED A+ ++ Sbjct: 194 YIKNFGEDMDDERLKEWFGQYGAALSVKVMTD-DHGKSRGFGFVSFERHEDAQKAVDDMN 252 Query: 391 GQEMDGRPLRVNVAAERPQR 332 G++++G+ + V A ++ +R Sbjct: 253 GKDLNGKAIFVGRAQKKVER 272 Score = 52.4 bits (124), Expect = 1e-06 Identities = 28/80 (35%), Positives = 48/80 (60%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 YV NL +D RL + F+ G + +A ++ E GRS+GFGFV +S E+ A++ ++ Sbjct: 297 YVKNLDDGIDDERLRKEFTPFGSITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMN 354 Query: 391 GQEMDGRPLRVNVAAERPQR 332 G+ + +PL V +A + +R Sbjct: 355 GRIVATKPLYVALAQRKEER 374 Score = 40.4 bits (93), Expect = 0.004 Identities = 26/89 (29%), Positives = 46/89 (51%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 ++ NL ++ L FS G +++ +V D E G S+G+GFV ++E + AI ++ Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIDKMN 159 Query: 391 GQEMDGRPLRVNVAAERPQRGF*CGAAAE 305 G ++ R + V R +R GA A+ Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAK 188
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 53.5 bits (127), Expect = 5e-07 Identities = 27/87 (31%), Positives = 51/87 (58%) Frame = -3 Query: 601 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 422 P++ + ++G L ++ D L + F + G++ + ++ D +T RSRGFGFVT + E Sbjct: 20 PKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVE 79 Query: 421 DLDSAISALDGQEMDGRPLRVNVAAER 341 ++D+++SA ++DGR + A R Sbjct: 80 EVDASMSARP-HKVDGRVVEPKRAVSR 105 Score = 37.7 bits (86), Expect = 0.029 Identities = 15/58 (25%), Positives = 30/58 (51%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 404 + +VG + E+ L +G++ ++ DR++G+ RGF FVT + +D + Sbjct: 119 KIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 176
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 53.5 bits (127), Expect = 5e-07 Identities = 27/87 (31%), Positives = 51/87 (58%) Frame = -3 Query: 601 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 422 P++ + ++G L ++ D L + F + G++ + ++ D +T RSRGFGFVT + E Sbjct: 20 PKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVE 79 Query: 421 DLDSAISALDGQEMDGRPLRVNVAAER 341 ++D+++SA ++DGR + A R Sbjct: 80 EVDASMSARP-HKVDGRVVEPKRAVSR 105 Score = 40.0 bits (92), Expect = 0.006 Identities = 16/58 (27%), Positives = 31/58 (53%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 404 + +VG + E+ L F +G++ ++ DR++G+ RGF FVT + +D + Sbjct: 119 KIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 176
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 53.5 bits (127), Expect = 5e-07 Identities = 28/83 (33%), Positives = 47/83 (56%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 + ++G L ++ D L Q F + GE+V+ ++ D +T RSRGFGF+T + +D A +A Sbjct: 18 KLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQNA 77 Query: 397 LDGQEMDGRPLRVNVAAERPQRG 329 ++DGR + A R + G Sbjct: 78 RP-HKVDGRVVEPKRAVPRTEIG 99 Score = 45.1 bits (105), Expect = 2e-04 Identities = 22/63 (34%), Positives = 36/63 (57%) Frame = -3 Query: 601 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 422 P A+ + +VG + + E++ L F ++G VV+A IV D+ET + RGF FV + Sbjct: 101 PEAGATVKKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYD 160 Query: 421 DLD 413 +D Sbjct: 161 PVD 163
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 53.1 bits (126), Expect = 7e-07 Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 + +VG L W L F++ GEVV+ TI D TGRSRGFGF+ +D S Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF---KDSSSVEKV 132 Query: 397 LDGQE--MDGR 371 LD +E +DGR Sbjct: 133 LDQKEHRLDGR 143 Score = 32.0 bits (71), Expect = 1.6 Identities = 13/58 (22%), Positives = 30/58 (51%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 404 + +VG L +A + ++ + F + GE+ + D + + RGF F+T ++ + + Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVL 217
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 53.1 bits (126), Expect = 7e-07 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 4/97 (4%) Frame = -3 Query: 580 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 401 ++ ++G L W L FS+ GEVV+ T+ D TGRSRGFGFV E +D + Sbjct: 97 WKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD 156 Query: 400 ----ALDGQEMDGRPLRVNVAAERPQRGF*CGAAAES 302 L+G+ +D + + E ++ F G + ++ Sbjct: 157 QKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDT 193 Score = 33.9 bits (76), Expect = 0.42 Identities = 15/52 (28%), Positives = 27/52 (51%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 422 + +VG L + ++ + F GEV + + D +T + RGF F+T +E Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE 234
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 53.1 bits (126), Expect = 7e-07 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 4/97 (4%) Frame = -3 Query: 580 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 401 ++ ++G L W L FS+ GEVV+ T+ D TGRSRGFGFV E +D + Sbjct: 97 WKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD 156 Query: 400 ----ALDGQEMDGRPLRVNVAAERPQRGF*CGAAAES 302 L+G+ +D + + E ++ F G + ++ Sbjct: 157 QKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDT 193 Score = 33.9 bits (76), Expect = 0.42 Identities = 15/52 (28%), Positives = 27/52 (51%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 422 + +VG L + ++ + F GEV + + D +T + RGF F+T +E Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE 234
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 53.1 bits (126), Expect = 7e-07 Identities = 28/87 (32%), Positives = 49/87 (56%) Frame = -3 Query: 601 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 422 P++ + ++G L ++ D L F + G + + ++ D T RSRGFGFVT A+ E Sbjct: 6 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65 Query: 421 DLDSAISALDGQEMDGRPLRVNVAAER 341 ++D+A++A ++DGR + A R Sbjct: 66 EVDAAMNARP-HKVDGRVVEPKRAVSR 91 Score = 40.0 bits (92), Expect = 0.006 Identities = 17/58 (29%), Positives = 31/58 (53%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 404 + +VG + E+ L F ++G++ I+ DR +G+ RGF FVT + +D + Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 53.1 bits (126), Expect = 7e-07 Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Frame = -3 Query: 568 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 389 + NL +Q + L + F +G++ + I D+ + +S+GFGFV + D + A+ DG Sbjct: 23 IDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDG 82 Query: 388 QEMDGRPLRVNVAA-ERP 338 + +DGR LRV +A +RP Sbjct: 83 KLVDGRELRVTLAKYDRP 100
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 53.1 bits (126), Expect = 7e-07 Identities = 28/87 (32%), Positives = 49/87 (56%) Frame = -3 Query: 601 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 422 P++ + ++G L ++ D L F + G + + ++ D T RSRGFGFVT A+ E Sbjct: 6 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65 Query: 421 DLDSAISALDGQEMDGRPLRVNVAAER 341 ++D+A++A ++DGR + A R Sbjct: 66 EVDAAMNARP-HKVDGRVVEPKRAVSR 91 Score = 40.0 bits (92), Expect = 0.006 Identities = 17/58 (29%), Positives = 31/58 (53%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 404 + +VG + E+ L F ++G++ I+ DR +G+ RGF FVT + +D + Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 53.1 bits (126), Expect = 7e-07 Identities = 28/87 (32%), Positives = 49/87 (56%) Frame = -3 Query: 601 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 422 P++ + ++G L ++ D L F + G + + ++ D T RSRGFGFVT A+ E Sbjct: 6 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65 Query: 421 DLDSAISALDGQEMDGRPLRVNVAAER 341 ++D+A++A ++DGR + A R Sbjct: 66 EVDAAMNARP-HKVDGRVVEPKRAVSR 91 Score = 40.0 bits (92), Expect = 0.006 Identities = 17/58 (29%), Positives = 31/58 (53%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 404 + +VG + E+ L F ++G++ I+ DR +G+ RGF FVT + +D + Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 53.1 bits (126), Expect = 7e-07 Identities = 28/87 (32%), Positives = 49/87 (56%) Frame = -3 Query: 601 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 422 P++ + ++G L ++ D L F + G + + ++ D T RSRGFGFVT A+ E Sbjct: 6 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65 Query: 421 DLDSAISALDGQEMDGRPLRVNVAAER 341 ++D+A++A ++DGR + A R Sbjct: 66 EVDAAMNARP-HKVDGRVVEPKRAVSR 91 Score = 40.0 bits (92), Expect = 0.006 Identities = 17/58 (29%), Positives = 31/58 (53%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 404 + +VG + E+ L F ++G++ I+ DR +G+ RGF FVT + +D + Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 52.8 bits (125), Expect = 9e-07 Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 + +VG L W L F++ GEVV+ TI D TGRSRGFGF+ +D S Sbjct: 69 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF---KDAASVEKV 125 Query: 397 LDGQE--MDGR 371 LD +E +DGR Sbjct: 126 LDQKEHRLDGR 136 Score = 30.8 bits (68), Expect = 3.5 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Frame = -3 Query: 577 RAYVGNL-PWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 404 + +VG L P + ++ + F E GE+ + D + + RGF F+T +E + + Sbjct: 153 KIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVL 211
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 52.8 bits (125), Expect = 9e-07 Identities = 29/99 (29%), Positives = 55/99 (55%) Frame = -3 Query: 628 QRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGF 449 +R S++E + + YV N+ + D + ++F++ G +V+A++ D + G+ +GF Sbjct: 205 ERDSQLEETKAHYTN---LYVKNINSETTDEQFQELFAKFGPIVSASLEKDAD-GKLKGF 260 Query: 448 GFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 332 GFV ED A+ AL+ E++G L V A ++ +R Sbjct: 261 GFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNER 299 Score = 50.1 bits (118), Expect = 6e-06 Identities = 26/80 (32%), Positives = 47/80 (58%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 +V NL +D +L + F+ +G + +A ++ E G+S+GFGFV ++ E+ AI+ + Sbjct: 324 FVKNLDDSVDDEKLEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTPEEATKAITEKN 382 Query: 391 GQEMDGRPLRVNVAAERPQR 332 Q + G+PL V +A + R Sbjct: 383 QQIVAGKPLYVAIAQRKDVR 402 Score = 44.7 bits (104), Expect = 2e-04 Identities = 27/91 (29%), Positives = 46/91 (50%) Frame = -3 Query: 604 PPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASK 425 P + S ++ NL ++ L FS G+++++ I D E G+S+GFGFV + Sbjct: 117 PSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEE 175 Query: 424 EDLDSAISALDGQEMDGRPLRVNVAAERPQR 332 AI AL+G ++G+ + V R +R Sbjct: 176 GAAKEAIDALNGMLLNGQEIYVAPHLSRKER 206
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 52.8 bits (125), Expect = 9e-07 Identities = 27/80 (33%), Positives = 48/80 (60%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 ++ NL + +D RL FS G + +A I+ D E G+S+GFGFV + E+ + A++ ++ Sbjct: 367 FIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEMN 425 Query: 391 GQEMDGRPLRVNVAAERPQR 332 + + G+PL V +A + R Sbjct: 426 QRMLAGKPLYVALAQRKEVR 445 Score = 50.1 bits (118), Expect = 6e-06 Identities = 29/99 (29%), Positives = 51/99 (51%) Frame = -3 Query: 628 QRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGF 449 +R S+VE F + Y+ NL + + +F + GE+ + ++V D + + RGF Sbjct: 248 ERQSKVEALKANFTN---VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGF 303 Query: 448 GFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 332 GFV A+ E A+ L+ +E G+ L V A ++ +R Sbjct: 304 GFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHER 342
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 52.4 bits (124), Expect = 1e-06 Identities = 29/91 (31%), Positives = 42/91 (46%) Frame = -3 Query: 601 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 422 PR + + YVGNLP + + +F ++G + I ++GR F FV Sbjct: 2 PRGGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDI----KSGRGPAFAFVEFEDHR 57 Query: 421 DLDSAISALDGQEMDGRPLRVNVAAERPQRG 329 D + A+ A DG E DGR +RV RG Sbjct: 58 DAEDAVRARDGYEFDGRRIRVEFTRGVGPRG 88
>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1| Length = 632 Score = 52.4 bits (124), Expect = 1e-06 Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 1/97 (1%) Frame = -3 Query: 628 QRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMF-SEHGEVVNATIVYDRETGRSRG 452 Q + V R P F +VG+L EDS L F S + +A I+ D TG SR Sbjct: 171 QHNNFVSRDPE-----FSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRK 225 Query: 451 FGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 341 +GFV +S+++ A+ + G GRPLR++VA+ + Sbjct: 226 YGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPK 262
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 52.4 bits (124), Expect = 1e-06 Identities = 30/80 (37%), Positives = 43/80 (53%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 YVG L + +D L F G++ + I D ET + RGF FV ED +AI ++ Sbjct: 9 YVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 68 Query: 391 GQEMDGRPLRVNVAAERPQR 332 E+ GR +RVN+A +P R Sbjct: 69 ESELFGRTIRVNLA--KPMR 86
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 52.4 bits (124), Expect = 1e-06 Identities = 30/80 (37%), Positives = 43/80 (53%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 YVG L + +D L F G++ + I D ET + RGF FV ED +AI ++ Sbjct: 9 YVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 68 Query: 391 GQEMDGRPLRVNVAAERPQR 332 E+ GR +RVN+A +P R Sbjct: 69 ESELFGRTIRVNLA--KPMR 86
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 52.4 bits (124), Expect = 1e-06 Identities = 27/80 (33%), Positives = 48/80 (60%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 Y+ NL D +L +MFSE+G V + ++ + + G SRGFGFV ++ E+ A+ ++ Sbjct: 331 YLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEMN 389 Query: 391 GQEMDGRPLRVNVAAERPQR 332 G+ + +PL V +A + +R Sbjct: 390 GKMIGRKPLYVALAQRKEER 409 Score = 43.1 bits (100), Expect = 7e-04 Identities = 23/91 (25%), Positives = 43/91 (47%) Frame = -3 Query: 604 PPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASK 425 P + + ++ NL ++ L + FS G +++ + D GRS+G+GFV + Sbjct: 124 PSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKE 182 Query: 424 EDLDSAISALDGQEMDGRPLRVNVAAERPQR 332 E +AI L+G ++ + + V R R Sbjct: 183 ETAQAAIDKLNGMLLNDKQVFVGHFVRRQDR 213
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 52.0 bits (123), Expect = 1e-06 Identities = 26/71 (36%), Positives = 44/71 (61%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 +VGNLP++ E+S + + F + G ++ IV D+ TG +GFG+V + + + A+ L+ Sbjct: 290 FVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALK-LN 348 Query: 391 GQEMDGRPLRV 359 E+ GR LRV Sbjct: 349 NSELMGRKLRV 359
>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 52.0 bits (123), Expect = 1e-06 Identities = 23/82 (28%), Positives = 47/82 (57%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 +V + + +S+L + F +G + +VY++ +G+ RG+ F+ + D+ SA D Sbjct: 106 FVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKHAD 165 Query: 391 GQEMDGRPLRVNVAAERPQRGF 326 G+++DGR + V+V R +G+ Sbjct: 166 GKKIDGRRVLVDVERGRTVKGW 187
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 52.0 bits (123), Expect = 1e-06 Identities = 21/70 (30%), Positives = 43/70 (61%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 Y+G++P+ + +++ + S G V+N +++D +TGRS+G+ F+ E SA+ L+ Sbjct: 21 YLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLN 80 Query: 391 GQEMDGRPLR 362 G ++ R L+ Sbjct: 81 GYQLGSRFLK 90
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 52.0 bits (123), Expect = 1e-06 Identities = 29/71 (40%), Positives = 43/71 (60%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 +VGNLP++ EDS L + F + G +V IV + TG RGFG+V + + + A+ L+ Sbjct: 294 FVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALK-LN 352 Query: 391 GQEMDGRPLRV 359 E+ GR LRV Sbjct: 353 NSELMGRKLRV 363
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 52.0 bits (123), Expect = 1e-06 Identities = 28/87 (32%), Positives = 48/87 (55%) Frame = -3 Query: 601 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 422 P++ + ++G L ++ D L F + G + + ++ D T RSRGFGFVT A+ E Sbjct: 6 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65 Query: 421 DLDSAISALDGQEMDGRPLRVNVAAER 341 +D+A++A ++DGR + A R Sbjct: 66 KVDAAMNARP-HKVDGRVVEPKRAVSR 91 Score = 39.3 bits (90), Expect = 0.010 Identities = 17/58 (29%), Positives = 30/58 (51%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 404 + +VG + E+ L F ++G++ I+ DR +G+ RGF FVT +D + Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIV 162
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 52.0 bits (123), Expect = 1e-06 Identities = 27/95 (28%), Positives = 52/95 (54%) Frame = -3 Query: 613 VERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTM 434 +ER R+ + ++G L ++ + L + + G++ + ++ D + RSRGFGFVT Sbjct: 10 LERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTF 69 Query: 433 ASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRG 329 +S ++D+A++A +DGR + A R + G Sbjct: 70 SSMAEVDAAMAARP-HSIDGRVVEPKRAVAREESG 103 Score = 46.2 bits (108), Expect = 8e-05 Identities = 19/58 (32%), Positives = 33/58 (56%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 404 + +VG + E+ L F E+G++ I+ DR++G+ RGFGFVT + +D + Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 170
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 52.0 bits (123), Expect = 1e-06 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 4/97 (4%) Frame = -3 Query: 580 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 401 ++ ++G L W L FS+ G+VV+ T+ D TGRSRGFGFV E +D + Sbjct: 95 WKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD 154 Query: 400 ----ALDGQEMDGRPLRVNVAAERPQRGF*CGAAAES 302 L+G+ +D + + E ++ F G + ++ Sbjct: 155 QKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDT 191 Score = 33.9 bits (76), Expect = 0.42 Identities = 15/52 (28%), Positives = 27/52 (51%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 422 + +VG L + ++ + F GEV + + D +T + RGF F+T +E Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE 232
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 51.6 bits (122), Expect = 2e-06 Identities = 27/87 (31%), Positives = 49/87 (56%) Frame = -3 Query: 601 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 422 P++ + ++G L ++ D L + F + G + + ++ D +T RSRGFGFVT + E Sbjct: 28 PKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVE 87 Query: 421 DLDSAISALDGQEMDGRPLRVNVAAER 341 ++D+A+ A ++DGR + A R Sbjct: 88 EVDAAMCARP-HKVDGRVVEPKRAVSR 113 Score = 41.2 bits (95), Expect = 0.003 Identities = 16/58 (27%), Positives = 32/58 (55%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 404 + +VG + E+ L F ++G++ ++ DR++G+ RGF FVT + +D + Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 51.6 bits (122), Expect = 2e-06 Identities = 27/87 (31%), Positives = 49/87 (56%) Frame = -3 Query: 601 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 422 P++ + ++G L ++ D L + F + G + + ++ D +T RSRGFGFVT + E Sbjct: 28 PKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVE 87 Query: 421 DLDSAISALDGQEMDGRPLRVNVAAER 341 ++D+A+ A ++DGR + A R Sbjct: 88 EVDAAMCARP-HKVDGRVVEPKRAVSR 113 Score = 41.2 bits (95), Expect = 0.003 Identities = 16/58 (27%), Positives = 32/58 (55%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 404 + +VG + E+ L F ++G++ ++ DR++G+ RGF FVT + +D + Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 437 Score = 51.6 bits (122), Expect = 2e-06 Identities = 23/82 (28%), Positives = 46/82 (56%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 +V + + +S+L + F +G + +VY + +G+ RG+ F+ + D+ SA D Sbjct: 106 FVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHAD 165 Query: 391 GQEMDGRPLRVNVAAERPQRGF 326 G+++DGR + V+V R +G+ Sbjct: 166 GKKIDGRRVLVDVERGRTVKGW 187
>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70| kDa) (snRNP70) Length = 448 Score = 51.6 bits (122), Expect = 2e-06 Identities = 23/82 (28%), Positives = 46/82 (56%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 +V + + +S+L + F +G + +VY + +G+ RG+ F+ + D+ SA D Sbjct: 106 FVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHAD 165 Query: 391 GQEMDGRPLRVNVAAERPQRGF 326 G+++DGR + V+V R +G+ Sbjct: 166 GKKIDGRRVLVDVERGRTVKGW 187
>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein| Length = 348 Score = 51.6 bits (122), Expect = 2e-06 Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 4/99 (4%) Frame = -3 Query: 634 AAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSR 455 A + P Q A FR +VG L + S + +F G V TI + R +R Sbjct: 26 AVHASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTR 85 Query: 454 ----GFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVA 350 G FVT ++ED+D AI L+G+ +D R + V A Sbjct: 86 LVPSGIAFVTFNNQEDVDKAIETLNGKTLDDREIVVQKA 124 Score = 34.7 bits (78), Expect = 0.24 Identities = 18/47 (38%), Positives = 26/47 (55%) Frame = -3 Query: 472 ETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 332 E R RGFGFV+ A+ ED AI ++G+++ L V A R + Sbjct: 253 EQRRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFREDK 299
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 51.6 bits (122), Expect = 2e-06 Identities = 27/87 (31%), Positives = 49/87 (56%) Frame = -3 Query: 601 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 422 P++ + ++G L ++ D L + F + G + + ++ D +T RSRGFGFVT + E Sbjct: 28 PKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVE 87 Query: 421 DLDSAISALDGQEMDGRPLRVNVAAER 341 ++D+A+ A ++DGR + A R Sbjct: 88 EVDAAMCARP-HKVDGRVVEPKRAVSR 113 Score = 41.2 bits (95), Expect = 0.003 Identities = 16/58 (27%), Positives = 32/58 (55%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 404 + +VG + E+ L F ++G++ ++ DR++G+ RGF FVT + +D + Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 51.6 bits (122), Expect = 2e-06 Identities = 27/79 (34%), Positives = 39/79 (49%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 + ++G L WQ L FS+ GE+ ++ D T RSRGFGFVT A +D + Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81 Query: 397 LDGQEMDGRPLRVNVAAER 341 E+D + + VA R Sbjct: 82 -PHHELDSKTIDPKVAFPR 99 Score = 42.7 bits (99), Expect = 9e-04 Identities = 22/77 (28%), Positives = 40/77 (51%) Frame = -3 Query: 601 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 422 P+ + + +VG L + Q F + G+V +A +++D+ T R RGFGFVT E Sbjct: 103 PKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTF-ENE 161 Query: 421 DLDSAISALDGQEMDGR 371 D+ + + E++ + Sbjct: 162 DVVEKVCEIHFHEINNK 178
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 51.6 bits (122), Expect = 2e-06 Identities = 27/79 (34%), Positives = 39/79 (49%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 + ++G L WQ L FS+ GE+ ++ D T RSRGFGFVT A +D + Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81 Query: 397 LDGQEMDGRPLRVNVAAER 341 E+D + + VA R Sbjct: 82 -PHHELDSKTIDPKVAFPR 99 Score = 42.7 bits (99), Expect = 9e-04 Identities = 22/77 (28%), Positives = 40/77 (51%) Frame = -3 Query: 601 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 422 P+ + + +VG L + Q F + G+V +A +++D+ T R RGFGFVT E Sbjct: 103 PKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTF-ENE 161 Query: 421 DLDSAISALDGQEMDGR 371 D+ + + E++ + Sbjct: 162 DVVEKVCEIHFHEINNK 178
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 51.2 bits (121), Expect = 3e-06 Identities = 26/58 (44%), Positives = 37/58 (63%) Frame = -3 Query: 499 VNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF 326 V A IV DRETG S+GFGFV S+ED +A A++ E+DG + ++ A + + GF Sbjct: 595 VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGF 652 Score = 40.8 bits (94), Expect = 0.003 Identities = 21/76 (27%), Positives = 41/76 (53%) Frame = -3 Query: 568 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 389 + NL + A + L ++F E V + G+S+G+ F+ AS ED A+++ + Sbjct: 489 LSNLSYSATEETLQEVF----EKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNK 544 Query: 388 QEMDGRPLRVNVAAER 341 +E++GR +R+ + R Sbjct: 545 REIEGRAIRLELQGPR 560 Score = 36.2 bits (82), Expect = 0.084 Identities = 17/76 (22%), Positives = 36/76 (47%) Frame = -3 Query: 562 NLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQE 383 NLP++ L ++F + E+ + + G+S+G ++ ++ D + G E Sbjct: 398 NLPYKVTQDELKEVFEDAAEIRLVS-----KDGKSKGIAYIEFKTEADAEKTFEEKQGTE 452 Query: 382 MDGRPLRVNVAAERPQ 335 +DGR + + E+ Q Sbjct: 453 IDGRSISLYYTGEKGQ 468 Score = 32.3 bits (72), Expect = 1.2 Identities = 23/76 (30%), Positives = 37/76 (48%) Frame = -3 Query: 586 SSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSA 407 ++F +VGNL + L S+ N V D G +R FG+V S EDL+ A Sbjct: 304 TAFNLFVGNLNFNKSAPELKTGISDVF-AKNDLAVVDVRIGMTRKFGYVDFESAEDLEKA 362 Query: 406 ISALDGQEMDGRPLRV 359 + L G ++ G +++ Sbjct: 363 LE-LTGLKVFGNEIKL 377
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 51.2 bits (121), Expect = 3e-06 Identities = 29/95 (30%), Positives = 51/95 (53%) Frame = -3 Query: 613 VERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTM 434 +ER QF F +G L ++ + L + + G++ + ++ D + RSRGFGFVT Sbjct: 1 MEREKEQFRKLF---IGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTF 57 Query: 433 ASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRG 329 +S ++D+A++A +DGR + A R + G Sbjct: 58 SSMAEVDAAMAARP-HSIDGRVVEPKRAVAREESG 91 Score = 46.2 bits (108), Expect = 8e-05 Identities = 19/58 (32%), Positives = 33/58 (56%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 404 + +VG + E+ L F E+G++ I+ DR++G+ RGFGFVT + +D + Sbjct: 101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 158
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 51.2 bits (121), Expect = 3e-06 Identities = 26/58 (44%), Positives = 37/58 (63%) Frame = -3 Query: 499 VNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF 326 V A IV DRETG S+GFGFV S+ED +A A++ E+DG + ++ A + + GF Sbjct: 592 VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGF 649 Score = 36.2 bits (82), Expect = 0.084 Identities = 33/146 (22%), Positives = 63/146 (43%), Gaps = 9/146 (6%) Frame = -3 Query: 616 RVERPPRQFASSFRA----YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGF 449 ++E+P + + RA NL + + L ++F + E+ + + G+S+G Sbjct: 378 KLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDAMEIRLVS-----QDGKSKGI 432 Query: 448 GFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF*CGA----AAESMAWRFS- 284 ++ S+ D + + G E+DGR + + E+ QR G + ES S Sbjct: 433 AYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKTSTWSGESKTLVLSN 492 Query: 283 WTHGNTAEMLLQKTEACHHLKLPH*P 206 ++ T E L + E +K+P P Sbjct: 493 LSYSATKETLEEVFEKATFIKVPQNP 518 Score = 33.1 bits (74), Expect = 0.71 Identities = 24/74 (32%), Positives = 36/74 (48%) Frame = -3 Query: 580 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 401 F ++GNL + L SE N V D TG +R FG+V S EDL+ A+ Sbjct: 308 FNLFIGNLNPNKSVNELKFAISELF-AKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE 366 Query: 400 ALDGQEMDGRPLRV 359 L G ++ G +++ Sbjct: 367 -LTGLKVFGNEIKL 379
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 51.2 bits (121), Expect = 3e-06 Identities = 26/58 (44%), Positives = 37/58 (63%) Frame = -3 Query: 499 VNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF 326 V A IV DRETG S+GFGFV S+ED +A A++ E+DG + ++ A + + GF Sbjct: 596 VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGF 653 Score = 40.8 bits (94), Expect = 0.003 Identities = 21/76 (27%), Positives = 41/76 (53%) Frame = -3 Query: 568 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 389 + NL + A + L ++F E V + G+S+G+ F+ AS ED A+++ + Sbjct: 490 LSNLSYSATEETLQEVF----EKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNK 545 Query: 388 QEMDGRPLRVNVAAER 341 +E++GR +R+ + R Sbjct: 546 REIEGRAIRLELQGPR 561 Score = 36.2 bits (82), Expect = 0.084 Identities = 17/76 (22%), Positives = 36/76 (47%) Frame = -3 Query: 562 NLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQE 383 NLP++ L ++F + E+ + + G+S+G ++ ++ D + G E Sbjct: 399 NLPYKVTQDELKEVFEDAAEIRLVS-----KDGKSKGIAYIEFKTEADAEKTFEEKQGTE 453 Query: 382 MDGRPLRVNVAAERPQ 335 +DGR + + E+ Q Sbjct: 454 IDGRSISLYYTGEKGQ 469 Score = 32.3 bits (72), Expect = 1.2 Identities = 23/76 (30%), Positives = 37/76 (48%) Frame = -3 Query: 586 SSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSA 407 ++F +VGNL + L S+ N V D G +R FG+V S EDL+ A Sbjct: 305 TAFNLFVGNLNFNKSAPELKTGISDVF-AKNDLAVVDVRIGMTRKFGYVDFESAEDLEKA 363 Query: 406 ISALDGQEMDGRPLRV 359 + L G ++ G +++ Sbjct: 364 LE-LTGLKVFGNEIKL 378
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 51.2 bits (121), Expect = 3e-06 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 3/72 (4%) Frame = -3 Query: 583 SFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 404 S + ++G L W + L + F ++G V + I+ D TGRSRGFGF++ +D + Sbjct: 158 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVV 217 Query: 403 SA---LDGQEMD 377 LDG+ +D Sbjct: 218 KTQHILDGKVID 229 Score = 45.8 bits (107), Expect = 1e-04 Identities = 19/55 (34%), Positives = 34/55 (61%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLD 413 + +VG + + FS+ G +++A ++ D++TG+SRGFGFVT S + +D Sbjct: 244 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVD 298
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 51.2 bits (121), Expect = 3e-06 Identities = 23/68 (33%), Positives = 40/68 (58%) Frame = -3 Query: 589 ASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDS 410 +S+ + +VG++P A + + F +HG V+ ++ D+ TG+ +G FV A+ +D D Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 176 Query: 409 AISALDGQ 386 AI AL Q Sbjct: 177 AIRALHNQ 184 Score = 43.5 bits (101), Expect = 5e-04 Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 4/88 (4%) Frame = -3 Query: 580 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 401 F+ +VG+L QA + + ++F + G V + ++ D E +SRG GFV +SKE +AI Sbjct: 211 FKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAID 269 Query: 400 ALDG-QEMDG--RPLRVNVA-AERPQRG 329 L+G M G +PL V A +RP+ G Sbjct: 270 GLNGTYTMRGCNQPLIVRFAEPKRPKPG 297
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 51.2 bits (121), Expect = 3e-06 Identities = 26/58 (44%), Positives = 37/58 (63%) Frame = -3 Query: 499 VNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF 326 V A IV DRETG S+GFGFV S+ED +A A++ E+DG + ++ A + + GF Sbjct: 595 VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGF 652 Score = 41.6 bits (96), Expect = 0.002 Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 3/99 (3%) Frame = -3 Query: 628 QRGSRVERPPRQFASSFRA---YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRS 458 ++G R ER + S + + NL + A + L ++F E V + G+S Sbjct: 466 EKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVF----EKATFIKVPQNQQGKS 521 Query: 457 RGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 341 +G+ F+ AS ED A+++ + E++GR +R+ + R Sbjct: 522 KGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPR 560 Score = 35.4 bits (80), Expect = 0.14 Identities = 22/99 (22%), Positives = 46/99 (46%), Gaps = 4/99 (4%) Frame = -3 Query: 616 RVERPPRQFASSFRA----YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGF 449 ++E+P + + RA NL + + L ++F + E+ + + G+S+G Sbjct: 377 KLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVS-----QDGKSKGI 431 Query: 448 GFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 332 ++ S+ D + + G E+DGR + + E+ QR Sbjct: 432 AYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQR 470 Score = 33.9 bits (76), Expect = 0.42 Identities = 24/74 (32%), Positives = 36/74 (48%) Frame = -3 Query: 580 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 401 F ++GNL + L SE N V D TG +R FG+V S EDL+ A+ Sbjct: 307 FNLFIGNLNPNKSVAELKVAISEPF-AKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE 365 Query: 400 ALDGQEMDGRPLRV 359 L G ++ G +++ Sbjct: 366 -LTGLKVFGNEIKL 378
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 51.2 bits (121), Expect = 3e-06 Identities = 26/58 (44%), Positives = 37/58 (63%) Frame = -3 Query: 499 VNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF 326 V A IV DRETG S+GFGFV S+ED +A A++ E+DG + ++ A + + GF Sbjct: 598 VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGF 655 Score = 40.0 bits (92), Expect = 0.006 Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 3/99 (3%) Frame = -3 Query: 628 QRGSRVERPPRQFASSFRA---YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRS 458 ++G R ER + S + + NL + A + L ++F E V G+S Sbjct: 469 EKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVF----EKATFIKVPQNPHGKS 524 Query: 457 RGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 341 +G+ F+ AS ED A+++ + E++GR +R+ + R Sbjct: 525 KGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPR 563 Score = 37.7 bits (86), Expect = 0.029 Identities = 34/146 (23%), Positives = 63/146 (43%), Gaps = 9/146 (6%) Frame = -3 Query: 616 RVERPPRQFASSFRA----YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGF 449 ++E+P + + RA NL + + L ++F + E+ + + GRS+G Sbjct: 380 KLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDAVEIRLVS-----QDGRSKGI 434 Query: 448 GFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF*CGA----AAESMAWRFS- 284 ++ S+ D + + G E+DGR + + E+ QR G + ES S Sbjct: 435 AYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSN 494 Query: 283 WTHGNTAEMLLQKTEACHHLKLPH*P 206 ++ T E L + E +K+P P Sbjct: 495 LSYSATEETLQEVFEKATFIKVPQNP 520 Score = 32.0 bits (71), Expect = 1.6 Identities = 23/74 (31%), Positives = 35/74 (47%) Frame = -3 Query: 580 FRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 401 F ++GNL + L SE N D TG +R FG+V S EDL+ A+ Sbjct: 310 FNLFIGNLNPNKSVAELKVAISELF-AKNDLAAVDVRTGTNRKFGYVDFESAEDLEKALE 368 Query: 400 ALDGQEMDGRPLRV 359 L G ++ G +++ Sbjct: 369 -LTGLKVFGNEIKL 381
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 51.2 bits (121), Expect = 3e-06 Identities = 26/58 (44%), Positives = 37/58 (63%) Frame = -3 Query: 499 VNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQRGF 326 V A IV DRETG S+GFGFV S+ED +A A++ E+DG + ++ A + + GF Sbjct: 597 VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGF 654 Score = 40.8 bits (94), Expect = 0.003 Identities = 21/76 (27%), Positives = 41/76 (53%) Frame = -3 Query: 568 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 389 + NL + A + L ++F E V + G+S+G+ F+ AS ED A+++ + Sbjct: 491 LSNLSYSATEETLQEVF----EKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNK 546 Query: 388 QEMDGRPLRVNVAAER 341 +E++GR +R+ + R Sbjct: 547 REIEGRAIRLELQGPR 562 Score = 36.2 bits (82), Expect = 0.084 Identities = 17/76 (22%), Positives = 36/76 (47%) Frame = -3 Query: 562 NLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQE 383 NLP++ L ++F + E+ + + G+S+G ++ ++ D + G E Sbjct: 400 NLPYKVTQDELKEVFEDAAEIRLVS-----KDGKSKGIAYIEFKTEADAEKTFEEKQGTE 454 Query: 382 MDGRPLRVNVAAERPQ 335 +DGR + + E+ Q Sbjct: 455 IDGRSISLYYTGEKGQ 470 Score = 32.3 bits (72), Expect = 1.2 Identities = 23/76 (30%), Positives = 37/76 (48%) Frame = -3 Query: 586 SSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSA 407 ++F +VGNL + L S+ N V D G +R FG+V S EDL+ A Sbjct: 306 TAFNLFVGNLNFNKSAPELKTGISDVF-AKNDLAVVDVRIGMTRKFGYVDFESAEDLEKA 364 Query: 406 ISALDGQEMDGRPLRV 359 + L G ++ G +++ Sbjct: 365 LE-LTGLKVFGNEIKL 379
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 50.8 bits (120), Expect = 3e-06 Identities = 27/79 (34%), Positives = 40/79 (50%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 + ++G L WQ L + F + GEV ++ D T RSRGFGFVT + +D + A Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL-A 79 Query: 397 LDGQEMDGRPLRVNVAAER 341 E+D + + VA R Sbjct: 80 QSRHELDSKTIDPKVAFPR 98 Score = 42.4 bits (98), Expect = 0.001 Identities = 22/77 (28%), Positives = 40/77 (51%) Frame = -3 Query: 601 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 422 P+ + + +VG L + F + G+V +A +++D+ T R RGFGFVT S E Sbjct: 102 PKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFES-E 160 Query: 421 DLDSAISALDGQEMDGR 371 D+ + + E++ + Sbjct: 161 DIVEKVCEIHFHEINNK 177
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 50.8 bits (120), Expect = 3e-06 Identities = 27/79 (34%), Positives = 40/79 (50%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 + ++G L WQ L + F + GEV ++ D T RSRGFGFVT + +D + A Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL-A 79 Query: 397 LDGQEMDGRPLRVNVAAER 341 E+D + + VA R Sbjct: 80 QSRHELDSKTIDPKVAFPR 98 Score = 42.4 bits (98), Expect = 0.001 Identities = 22/77 (28%), Positives = 40/77 (51%) Frame = -3 Query: 601 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 422 P+ + + +VG L + F + G+V +A +++D+ T R RGFGFVT S E Sbjct: 102 PKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFES-E 160 Query: 421 DLDSAISALDGQEMDGR 371 D+ + + E++ + Sbjct: 161 DIVEKVCEIHFHEINNK 177
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 50.8 bits (120), Expect = 3e-06 Identities = 27/79 (34%), Positives = 40/79 (50%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 + ++G L WQ L + F + GEV ++ D T RSRGFGFVT + +D + A Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL-A 79 Query: 397 LDGQEMDGRPLRVNVAAER 341 E+D + + VA R Sbjct: 80 QSRHELDSKTIDPKVAFPR 98 Score = 44.3 bits (103), Expect = 3e-04 Identities = 23/77 (29%), Positives = 41/77 (53%) Frame = -3 Query: 601 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 422 P+ + + +VG L + Q F + G+V +A +++D+ T R RGFGFVT S E Sbjct: 102 PKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFES-E 160 Query: 421 DLDSAISALDGQEMDGR 371 D+ + + E++ + Sbjct: 161 DIVEKVCEIHFHEINNK 177
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 50.8 bits (120), Expect = 3e-06 Identities = 27/91 (29%), Positives = 46/91 (50%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 + +VG L W+ + L F ++GE+ + + D +TGRSRGF F+ + E +D +SA Sbjct: 57 KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDK-VSA 115 Query: 397 LDGQEMDGRPLRVNVAAERPQRGF*CGAAAE 305 D ++ + + A R + F G E Sbjct: 116 ADEHIINSKKVDPKKAKARHGKIFVGGLTTE 146 Score = 40.0 bits (92), Expect = 0.006 Identities = 20/90 (22%), Positives = 44/90 (48%) Frame = -3 Query: 604 PPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASK 425 P + A + +VG L + D + F + G +V + +D++ + +GF F+T S+ Sbjct: 128 PKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSE 187 Query: 424 EDLDSAISALDGQEMDGRPLRVNVAAERPQ 335 + + + Q++ G+ + V A +P+ Sbjct: 188 QVVTDLLKT-PKQKIAGKEVDVKRATPKPE 216
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 50.8 bits (120), Expect = 3e-06 Identities = 27/74 (36%), Positives = 43/74 (58%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 +V + + ++ L Q+FS+ G V + I+ + T SRGFGF++ ++ E+ SAI L+ Sbjct: 104 FVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLN 163 Query: 391 GQEMDGRPLRVNVA 350 QE GR L V A Sbjct: 164 SQEFYGRVLNVQKA 177
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 50.8 bits (120), Expect = 3e-06 Identities = 26/76 (34%), Positives = 45/76 (59%) Frame = -3 Query: 583 SFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 404 ++ ++ NL + E++ L Q+F G V + IV D T + +G+GFV+M + ++ AI Sbjct: 401 AYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAI 460 Query: 403 SALDGQEMDGRPLRVN 356 AL+G M R L+V+ Sbjct: 461 RALNGYTMGNRVLQVS 476 Score = 38.5 bits (88), Expect = 0.017 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 13/86 (15%) Frame = -3 Query: 568 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDR-------------ETGRSRGFGFVTMAS 428 V LP + + +FS GE+ + ++ D+ G+S G+GFV Sbjct: 153 VNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVR 212 Query: 427 KEDLDSAISALDGQEMDGRPLRVNVA 350 +D + A++ L+G + + ++V+ A Sbjct: 213 PQDAEQAVNVLNGLRLQNKTIKVSFA 238
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 50.8 bits (120), Expect = 3e-06 Identities = 25/84 (29%), Positives = 44/84 (52%) Frame = -3 Query: 610 ERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMA 431 E+ ++ + R ++ N+ ++A + +FS++G + I D TG+S+GF +V Sbjct: 300 EQIAQKIEETGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFL 359 Query: 430 SKEDLDSAISALDGQEMDGRPLRV 359 KED A +LD Q GR L + Sbjct: 360 KKEDATRAYRSLDKQIFQGRLLHI 383 Score = 40.0 bits (92), Expect = 0.006 Identities = 22/88 (25%), Positives = 47/88 (53%) Frame = -3 Query: 598 RQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKED 419 ++ S + + NLP++A L+++F G++ + + + +RGF FV ++ Sbjct: 711 KKSGKSSKIIIKNLPFEATRKDLLELFGAFGQLKSVRVPKKFDQS-ARGFAFVEFNLMKE 769 Query: 418 LDSAISALDGQEMDGRPLRVNVAAERPQ 335 ++A+S L+G + GR L + A + P+ Sbjct: 770 AETAMSQLEGVHLLGRRLVMQYAEQDPE 797 Score = 37.7 bits (86), Expect = 0.029 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 5/79 (6%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYD---RETGR--SRGFGFVTMASKEDLDSA 407 +V NL + L +F V AT+ + +G+ S GFGFV +KE + A Sbjct: 620 FVKNLNFATTVQALSDLFKPLPGFVVATVKTKPDPKNSGKTLSMGFGFVEFRTKEQANVA 679 Query: 406 ISALDGQEMDGRPLRVNVA 350 IS LDG +DG L++ ++ Sbjct: 680 ISTLDGHVLDGHKLQLKLS 698
>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein| 11) Length = 281 Score = 50.8 bits (120), Expect = 3e-06 Identities = 28/81 (34%), Positives = 43/81 (53%) Frame = -3 Query: 601 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 422 P Q + +VGNL + + L ++F + G + TI DRE G+ + FGFV E Sbjct: 3 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPE 61 Query: 421 DLDSAISALDGQEMDGRPLRV 359 + AI+ L+G + GRP+ V Sbjct: 62 SVSYAIALLNGIRLYGRPINV 82
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 50.8 bits (120), Expect = 3e-06 Identities = 26/76 (34%), Positives = 45/76 (59%) Frame = -3 Query: 583 SFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 404 ++ ++ NL + E++ L Q+F G V + IV D T + +G+GFV+M + ++ AI Sbjct: 437 AYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAI 496 Query: 403 SALDGQEMDGRPLRVN 356 AL+G M R L+V+ Sbjct: 497 RALNGYTMGNRVLQVS 512 Score = 38.5 bits (88), Expect = 0.017 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 13/86 (15%) Frame = -3 Query: 568 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDR-------------ETGRSRGFGFVTMAS 428 V LP + + +FS GE+ + ++ D+ G+S G+GFV Sbjct: 189 VNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVR 248 Query: 427 KEDLDSAISALDGQEMDGRPLRVNVA 350 +D + A++ L+G + + ++V+ A Sbjct: 249 PQDAEQAVNVLNGLRLQNKTIKVSFA 274
>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)| (Increased sodium tolerance protein 3) Length = 148 Score = 50.8 bits (120), Expect = 3e-06 Identities = 24/80 (30%), Positives = 45/80 (56%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 Y+GNL + + ++ +FSE+G V+ + D TG S+GF ++ + A+ L+ Sbjct: 34 YIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTGESQGFAYLKYEDQRSTILAVDNLN 93 Query: 391 GQEMDGRPLRVNVAAERPQR 332 G ++ GR L+++ RP+R Sbjct: 94 GFKIGGRALKIDHTFYRPKR 113
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 50.4 bits (119), Expect = 4e-06 Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 4/71 (5%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS- 401 + +VG L D + + +S+ GE+ + ++ D T RSRGFGFVT + K ++D+A+ Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83 Query: 400 ---ALDGQEMD 377 +DG+ +D Sbjct: 84 RPHIIDGKTVD 94 Score = 42.7 bits (99), Expect = 9e-04 Identities = 19/61 (31%), Positives = 33/61 (54%) Frame = -3 Query: 586 SSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSA 407 S+ R YV + + L + F+++G V + I+ D+ T + RGFGFVT + +D Sbjct: 112 STKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQC 171 Query: 406 I 404 + Sbjct: 172 V 172
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 50.4 bits (119), Expect = 4e-06 Identities = 25/79 (31%), Positives = 46/79 (58%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 + ++G L ++ D L + F + G + + ++ D + RSRGFGFVT S +++D+A++A Sbjct: 15 KLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMTA 74 Query: 397 LDGQEMDGRPLRVNVAAER 341 ++DGR + A R Sbjct: 75 RP-HKVDGRVVEPKRAVSR 92 Score = 41.6 bits (96), Expect = 0.002 Identities = 17/58 (29%), Positives = 32/58 (55%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 404 + +VG + E+ L + F ++G++ I+ DR +G+ RGF FVT + +D + Sbjct: 106 KIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIV 163
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 50.4 bits (119), Expect = 4e-06 Identities = 27/89 (30%), Positives = 46/89 (51%) Frame = -3 Query: 598 RQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKED 419 + A YV N+ + L + FS+ G + + ++ D E G+S+GFGFV ++ E+ Sbjct: 298 KMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCD-EKGKSKGFGFVCFSTPEE 356 Query: 418 LDSAISALDGQEMDGRPLRVNVAAERPQR 332 A+ GQ G+PL V +A ++ R Sbjct: 357 AIDAVKTFHGQMFHGKPLYVAIAQKKEDR 385 Score = 38.9 bits (89), Expect = 0.013 Identities = 22/80 (27%), Positives = 40/80 (50%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 +V NLP ++ L MF + G +V+ + E G+SRG+GFV ++ +AI L+ Sbjct: 115 FVKNLPESVTNAVLQDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQFEQEDAAHAAIQTLN 173 Query: 391 GQEMDGRPLRVNVAAERPQR 332 + + + V ++ R Sbjct: 174 STIVADKEIYVGKFMKKTDR 193 Score = 38.9 bits (89), Expect = 0.013 Identities = 20/78 (25%), Positives = 38/78 (48%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 YVG+L + L F+E + + + D +GRS +G+ S++D + AI + Sbjct: 27 YVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKN 86 Query: 391 GQEMDGRPLRVNVAAERP 338 ++G+ +RV + P Sbjct: 87 NSLLNGKMIRVMWSVRAP 104
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 50.1 bits (118), Expect = 6e-06 Identities = 27/89 (30%), Positives = 49/89 (55%) Frame = -3 Query: 598 RQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKED 419 R A+ +V N+ +D +L ++F E+G + ++ D +G+S+GFGFV + E Sbjct: 193 RDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEA 251 Query: 418 LDSAISALDGQEMDGRPLRVNVAAERPQR 332 A+ L G+ +DG+ L V A ++ +R Sbjct: 252 AQKAVLDLHGKSIDGKVLYVGRAQKKIER 280 Score = 45.4 bits (106), Expect = 1e-04 Identities = 23/77 (29%), Positives = 40/77 (51%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 Y+ NL D +L + FS G + A ++ E G+ +GFG V +S E+ A+ ++ Sbjct: 305 YIKNLDETINDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEATKAVDEMN 362 Query: 391 GQEMDGRPLRVNVAAER 341 G+ + +PL V + R Sbjct: 363 GRIVGSKPLHVTLGQAR 379 Score = 32.0 bits (71), Expect = 1.6 Identities = 18/71 (25%), Positives = 33/71 (46%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 YVG+L + L + F G + I D T G+G+V D + A++ ++ Sbjct: 21 YVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN 80 Query: 391 GQEMDGRPLRV 359 ++G+P R+ Sbjct: 81 FDLINGKPFRL 91
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 50.1 bits (118), Expect = 6e-06 Identities = 27/89 (30%), Positives = 49/89 (55%) Frame = -3 Query: 598 RQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKED 419 R A+ +V N+ +D +L ++F E+G + ++ D +G+S+GFGFV + E Sbjct: 193 RDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEA 251 Query: 418 LDSAISALDGQEMDGRPLRVNVAAERPQR 332 A+ L G+ +DG+ L V A ++ +R Sbjct: 252 AQKAVLDLHGKSIDGKVLYVGRAQKKIER 280 Score = 45.4 bits (106), Expect = 1e-04 Identities = 23/77 (29%), Positives = 40/77 (51%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 Y+ NL D +L + FS G + A ++ E G+ +GFG V +S E+ A+ ++ Sbjct: 305 YIKNLDETINDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEATKAVDEMN 362 Query: 391 GQEMDGRPLRVNVAAER 341 G+ + +PL V + R Sbjct: 363 GRIVGSKPLHVTLGQAR 379 Score = 32.0 bits (71), Expect = 1.6 Identities = 18/71 (25%), Positives = 33/71 (46%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 YVG+L + L + F G + I D T G+G+V D + A++ ++ Sbjct: 21 YVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN 80 Query: 391 GQEMDGRPLRV 359 ++G+P R+ Sbjct: 81 FDLINGKPFRL 91
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 50.1 bits (118), Expect = 6e-06 Identities = 27/89 (30%), Positives = 49/89 (55%) Frame = -3 Query: 598 RQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKED 419 R A+ +V N+ +D +L ++F E+G + ++ D +G+S+GFGFV + E Sbjct: 193 RDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEA 251 Query: 418 LDSAISALDGQEMDGRPLRVNVAAERPQR 332 A+ L G+ +DG+ L V A ++ +R Sbjct: 252 AQKAVLDLHGKSIDGKVLYVGRAQKKIER 280 Score = 45.8 bits (107), Expect = 1e-04 Identities = 23/77 (29%), Positives = 40/77 (51%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 Y+ NL D +L + FS G + A ++ E G+ +GFG V +S E+ A+ ++ Sbjct: 305 YIKNLDETINDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEATKAVDEMN 362 Query: 391 GQEMDGRPLRVNVAAER 341 G+ + +PL V + R Sbjct: 363 GRVVGSKPLHVTLGQAR 379 Score = 32.0 bits (71), Expect = 1.6 Identities = 18/71 (25%), Positives = 33/71 (46%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 YVG+L + L + F G + I D T G+G+V D + A++ ++ Sbjct: 21 YVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN 80 Query: 391 GQEMDGRPLRV 359 ++G+P R+ Sbjct: 81 FDLINGKPFRL 91
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 50.1 bits (118), Expect = 6e-06 Identities = 27/89 (30%), Positives = 49/89 (55%) Frame = -3 Query: 598 RQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKED 419 R A+ +V N+ +D +L ++F E+G + ++ D +G+S+GFGFV + E Sbjct: 193 RDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEA 251 Query: 418 LDSAISALDGQEMDGRPLRVNVAAERPQR 332 A+ L G+ +DG+ L V A ++ +R Sbjct: 252 AQKAVLDLHGKSIDGKVLYVGRAQKKIER 280 Score = 45.4 bits (106), Expect = 1e-04 Identities = 23/77 (29%), Positives = 40/77 (51%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 Y+ NL D +L + FS G + A ++ E G+ +GFG V +S E+ A+ ++ Sbjct: 305 YIKNLDETINDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEATKAVDEMN 362 Query: 391 GQEMDGRPLRVNVAAER 341 G+ + +PL V + R Sbjct: 363 GRIVGSKPLHVTLGQAR 379 Score = 32.0 bits (71), Expect = 1.6 Identities = 18/71 (25%), Positives = 33/71 (46%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 YVG+L + L + F G + I D T G+G+V D + A++ ++ Sbjct: 21 YVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN 80 Query: 391 GQEMDGRPLRV 359 ++G+P R+ Sbjct: 81 FDLINGKPFRL 91
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 50.1 bits (118), Expect = 6e-06 Identities = 27/89 (30%), Positives = 49/89 (55%) Frame = -3 Query: 598 RQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKED 419 R A+ +V N+ +D +L ++F E+G + ++ D +G+S+GFGFV + E Sbjct: 193 RDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEA 251 Query: 418 LDSAISALDGQEMDGRPLRVNVAAERPQR 332 A+ L G+ +DG+ L V A ++ +R Sbjct: 252 AQKAVLDLHGKSIDGKVLYVGRAQKKIER 280 Score = 45.4 bits (106), Expect = 1e-04 Identities = 23/77 (29%), Positives = 40/77 (51%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 Y+ NL D +L + FS G + A ++ E G+ +GFG V +S E+ A+ ++ Sbjct: 305 YIKNLDETINDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEATKAVDEMN 362 Query: 391 GQEMDGRPLRVNVAAER 341 G+ + +PL V + R Sbjct: 363 GRIVGSKPLHVTLGQAR 379 Score = 32.0 bits (71), Expect = 1.6 Identities = 18/71 (25%), Positives = 33/71 (46%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 YVG+L + L + F G + I D T G+G+V D + A++ ++ Sbjct: 21 YVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN 80 Query: 391 GQEMDGRPLRV 359 ++G+P R+ Sbjct: 81 FDLINGKPFRL 91
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 50.1 bits (118), Expect = 6e-06 Identities = 27/89 (30%), Positives = 49/89 (55%) Frame = -3 Query: 598 RQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKED 419 R A+ +V N+ +D +L ++F E+G + ++ D +G+S+GFGFV + E Sbjct: 193 RDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEA 251 Query: 418 LDSAISALDGQEMDGRPLRVNVAAERPQR 332 A+ L G+ +DG+ L V A ++ +R Sbjct: 252 AQKAVLDLHGKSIDGKVLYVGRAQKKIER 280 Score = 45.4 bits (106), Expect = 1e-04 Identities = 23/77 (29%), Positives = 40/77 (51%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 Y+ NL D +L + FS G + A ++ E G+ +GFG V +S E+ A+ ++ Sbjct: 305 YIKNLDETINDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEATKAVDEMN 362 Query: 391 GQEMDGRPLRVNVAAER 341 G+ + +PL V + R Sbjct: 363 GRIVGSKPLHVTLGQAR 379 Score = 32.0 bits (71), Expect = 1.6 Identities = 18/71 (25%), Positives = 33/71 (46%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 YVG+L + L + F G + I D T G+G+V D + A++ ++ Sbjct: 21 YVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN 80 Query: 391 GQEMDGRPLRV 359 ++G+P R+ Sbjct: 81 FDLINGKPFRL 91
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 49.7 bits (117), Expect = 7e-06 Identities = 27/71 (38%), Positives = 43/71 (60%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 +VGNLP++ ++S L + F + G +V IV + TG RGFG+V + + + A+ L+ Sbjct: 288 FVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALK-LN 346 Query: 391 GQEMDGRPLRV 359 E+ GR LRV Sbjct: 347 NSELMGRKLRV 357
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 49.7 bits (117), Expect = 7e-06 Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 1/84 (1%) Frame = -3 Query: 589 ASSFRAYVGNLPWQAEDSRLVQMF-SEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLD 413 AS + +VG+L + + +F S + +A I+ D +T SRG+GFV + D Sbjct: 183 ASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQK 242 Query: 412 SAISALDGQEMDGRPLRVNVAAER 341 SA++ + GQ RP+RV +A + Sbjct: 243 SALAEMQGQICGDRPIRVGLATPK 266
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 49.3 bits (116), Expect = 1e-05 Identities = 28/93 (30%), Positives = 49/93 (52%) Frame = -3 Query: 613 VERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTM 434 +ER QF F +G L ++ + L + + G++ + ++ D + RSRGFGFVT Sbjct: 1 MEREKEQFRKLF---IGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTF 57 Query: 433 ASKEDLDSAISALDGQEMDGRPLRVNVAAERPQ 335 + ++D+A+SA +DGR + A R + Sbjct: 58 SCMNEVDAAMSARP-HTIDGRVVEPKRAVAREE 89 Score = 47.0 bits (110), Expect = 5e-05 Identities = 18/58 (31%), Positives = 35/58 (60%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 404 + +VG + E+ L + F E+G++ + I+ D+++G+ RGFGFVT + +D + Sbjct: 101 KLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIV 158
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 49.3 bits (116), Expect = 1e-05 Identities = 24/80 (30%), Positives = 48/80 (60%), Gaps = 1/80 (1%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMF-SEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISAL 395 +VG+L +S+L ++F + + +A IV+D+ TG S+G+GFV + ++ A+S + Sbjct: 166 FVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEM 225 Query: 394 DGQEMDGRPLRVNVAAERPQ 335 G ++GR ++V + + Q Sbjct: 226 QGVFLNGRAIKVGPTSGQQQ 245
>SAFB2_MOUSE (Q80YR5) Scaffold attachment factor B2| Length = 991 Score = 49.3 bits (116), Expect = 1e-05 Identities = 26/84 (30%), Positives = 44/84 (52%) Frame = -3 Query: 589 ASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDS 410 +S +V L + L +FS+HG+V+ A +V + + +R +GFVTM++ ++ Sbjct: 448 SSGRNLWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEATK 507 Query: 409 AISALDGQEMDGRPLRVNVAAERP 338 IS L E+ GR + V A P Sbjct: 508 CISHLHRTELHGRMISVEKAKNEP 531
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 49.3 bits (116), Expect = 1e-05 Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Frame = -3 Query: 499 VNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER--PQRG 329 VNA IV DR+TG S+GFGFV ++ ED +A A++ E+DG + ++ A + QRG Sbjct: 526 VNARIVTDRDTGASKGFGFVDFSTAEDAKAAKEAMEDGEIDGNKVTLDFAKPKGDSQRG 584 Score = 41.6 bits (96), Expect = 0.002 Identities = 24/89 (26%), Positives = 46/89 (51%) Frame = -3 Query: 568 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 389 V NL + A + L ++F + +I + GR++GF F+ +S ED A+ + + Sbjct: 418 VNNLSYSATEDSLREVFEKA-----TSIRIPQNQGRAKGFAFIEFSSAEDAKDAMDSCNN 472 Query: 388 QEMDGRPLRVNVAAERPQRGF*CGAAAES 302 E++GR +R+ + +G G +A+S Sbjct: 473 TEIEGRSIRLEFSQGGGPQGGGRGGSAQS 501
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 49.3 bits (116), Expect = 1e-05 Identities = 26/77 (33%), Positives = 42/77 (54%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 +V ++P D +L FS + +A +V D RSRGFGFV+ A ++D A++ Sbjct: 29 FVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDTNK-RSRGFGFVSFAVEDDTKEALAKAR 87 Query: 391 GQEMDGRPLRVNVAAER 341 + +G LRV++A R Sbjct: 88 KTKFNGHILRVDIAKRR 104 Score = 45.4 bits (106), Expect = 1e-04 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%) Frame = -3 Query: 568 VGNLPWQAEDS-RLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 + N+PW D +L ++F +G VV ATI R+ G+ GF FVTM + A+ Sbjct: 151 IRNMPWSCRDPVKLKKIFGRYGTVVEATIPRKRD-GKLCGFAFVTMKKISNCRIALENTK 209 Query: 391 GQEMDGRPLRVNVAAER 341 ++DGR + V+ A ++ Sbjct: 210 DLKIDGRKVAVDFAVQK 226
>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)| Length = 303 Score = 49.3 bits (116), Expect = 1e-05 Identities = 28/79 (35%), Positives = 39/79 (49%) Frame = -3 Query: 586 SSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSA 407 SS YVGNLP + + +FS++G VV + + R G+ FV D + A Sbjct: 5 SSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDA 61 Query: 406 ISALDGQEMDGRPLRVNVA 350 I DG + DG LRV +A Sbjct: 62 IHGRDGYDFDGHRLRVELA 80
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 49.3 bits (116), Expect = 1e-05 Identities = 27/77 (35%), Positives = 40/77 (51%) Frame = -3 Query: 589 ASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDS 410 A S R +V NLP+ + + L ++FS++G + D T + +GF F+T E Sbjct: 399 AESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVK 458 Query: 409 AISALDGQEMDGRPLRV 359 A S +DGQ GR L V Sbjct: 459 AYSEVDGQVFQGRMLHV 475 Score = 43.1 bits (100), Expect = 7e-04 Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 1/76 (1%) Frame = -3 Query: 619 SRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRE-TGRSRGFGF 443 +R ++ PR+ +S + V N+P+QA + ++FS GE+ + TG RGFGF Sbjct: 820 ARKKQVPRKQTTS-KILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGF 878 Query: 442 VTMASKEDLDSAISAL 395 V +K+D A +AL Sbjct: 879 VDFLTKQDAKRAFNAL 894 Score = 39.3 bits (90), Expect = 0.010 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 3/77 (3%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGR---SRGFGFVTMASKEDLDSAIS 401 ++ NL + + +L ++FS+ G V + +I + S GFGFV E A+ Sbjct: 733 FIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKALK 792 Query: 400 ALDGQEMDGRPLRVNVA 350 L G +DG L V ++ Sbjct: 793 QLQGHVVDGHKLEVRIS 809 Score = 33.9 bits (76), Expect = 0.42 Identities = 17/57 (29%), Positives = 32/57 (56%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSA 407 R V NLP ++ R Q+F+ G + + ++ + ++ G+ R FGF+ S+E+ A Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQKA 58
>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2| (G-strand-binding protein 2) (RAP1 localization factor 6) Length = 427 Score = 48.9 bits (115), Expect = 1e-05 Identities = 27/76 (35%), Positives = 41/76 (53%) Frame = -3 Query: 586 SSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSA 407 + F ++ NLP+ L MF E G V+ A + D G SRGFG V +++++ A Sbjct: 217 NGFEVFIINLPYSMNWQSLKDMFKECGHVLRADVELDFN-GFSRGFGSVIYPTEDEMIRA 275 Query: 406 ISALDGQEMDGRPLRV 359 I +G E++GR L V Sbjct: 276 IDTFNGMEVEGRVLEV 291 Score = 40.4 bits (93), Expect = 0.004 Identities = 33/94 (35%), Positives = 42/94 (44%), Gaps = 6/94 (6%) Frame = -3 Query: 622 GSRVERP-PRQFASSFR-----AYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGR 461 G VER RQF ++ R +V NL + L ++F GEVV A I+ + G Sbjct: 102 GPIVERDLERQFDATKRNFENSIFVRNLTFDCTPEDLKELFGTVGEVVEADIITSK--GH 159 Query: 460 SRGFGFVTMASKEDLDSAISALDGQEMDGRPLRV 359 RG G V E + AIS DG R L V Sbjct: 160 HRGMGTVEFTKNESVQDAISKFDGALFMDRKLMV 193
>RU17_DROME (P17133) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) Length = 448 Score = 48.9 bits (115), Expect = 1e-05 Identities = 18/82 (21%), Positives = 47/82 (57%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 ++ + + +S+L + F +G + +++D+E+G+ +G+ F+ + D+ +A D Sbjct: 105 FIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHAD 164 Query: 391 GQEMDGRPLRVNVAAERPQRGF 326 G+++D + + V+V R +G+ Sbjct: 165 GKKIDSKRVLVDVERARTVKGW 186
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 48.5 bits (114), Expect = 2e-05 Identities = 26/83 (31%), Positives = 43/83 (51%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 R +VG + ++ +S L + FS++G V IV DR G S+G+GFVT ++ED + Sbjct: 34 RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQE 92 Query: 397 LDGQEMDGRPLRVNVAAERPQRG 329 + + L + A + Q G Sbjct: 93 AEKLNYKDKKLNIGPAIRKQQVG 115
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 48.5 bits (114), Expect = 2e-05 Identities = 26/83 (31%), Positives = 43/83 (51%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 R +VG + ++ +S L + FS++G V IV DR G S+G+GFVT ++ED + Sbjct: 34 RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQE 92 Query: 397 LDGQEMDGRPLRVNVAAERPQRG 329 + + L + A + Q G Sbjct: 93 AEKLNYKDKKLNIGPAIRKQQVG 115
>RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 427 Score = 48.5 bits (114), Expect = 2e-05 Identities = 21/77 (27%), Positives = 43/77 (55%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 +V L +++ +S++ + F +G + +V D+ T + +G+ F+ D+ +A D Sbjct: 141 FVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQAD 200 Query: 391 GQEMDGRPLRVNVAAER 341 GQ++DGR + V+V R Sbjct: 201 GQKIDGRRVLVDVERGR 217
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 48.5 bits (114), Expect = 2e-05 Identities = 25/81 (30%), Positives = 45/81 (55%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 + ++G L ++ D L F + G +V+ ++ D +T RSRGFGF+T + +D+A +A Sbjct: 25 KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNA 84 Query: 397 LDGQEMDGRPLRVNVAAERPQ 335 ++DGR + A R + Sbjct: 85 RP-HKIDGRTVEPKRAVPRQE 104 Score = 43.1 bits (100), Expect = 7e-04 Identities = 20/66 (30%), Positives = 36/66 (54%) Frame = -3 Query: 601 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 422 P A+ + +VG L ++ L + F + G++V+ IV D++TG+ RGF F+ + Sbjct: 108 PNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYD 167 Query: 421 DLDSAI 404 +D I Sbjct: 168 PVDKII 173
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 48.1 bits (113), Expect = 2e-05 Identities = 25/74 (33%), Positives = 39/74 (52%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 YVG L + + L F G++ + + D E+ R RGF F+ ED +AI ++ Sbjct: 9 YVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAIDNMN 68 Query: 391 GQEMDGRPLRVNVA 350 E+ GR +RVN+A Sbjct: 69 DSELCGRTIRVNLA 82
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 48.1 bits (113), Expect = 2e-05 Identities = 21/76 (27%), Positives = 42/76 (55%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 + ++G L + + L +F +HG + ++ DR T +SRGF F+T + D +A Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKD 67 Query: 397 LDGQEMDGRPLRVNVA 350 ++G+ + G+ ++V A Sbjct: 68 MNGKSLHGKAIKVEQA 83
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 48.1 bits (113), Expect = 2e-05 Identities = 23/75 (30%), Positives = 39/75 (52%) Frame = -3 Query: 583 SFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 404 S R +V NLP+ A +S L +FS+ G++ + +D + S+GF +V + A Sbjct: 300 SSRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQAY 359 Query: 403 SALDGQEMDGRPLRV 359 LDG+ GR + + Sbjct: 360 KELDGKHFQGRLMHI 374 Score = 40.4 bits (93), Expect = 0.004 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 2/99 (2%) Frame = -3 Query: 634 AAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIV--YDRETGR 461 AA+ R + + A + + NLP+QA + +F +G++ + + +DR Sbjct: 684 AAEERRREDTAKKIAARRTKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRS--- 740 Query: 460 SRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAE 344 +RGFGF S + ++A+ AL + GR L + A E Sbjct: 741 ARGFGFADFVSAREAENAMDALKNTHLLGRRLVLEFANE 779 Score = 36.6 bits (83), Expect = 0.064 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 5/79 (6%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGR-----SRGFGFVTMASKEDLDSA 407 +V NL + + R ++F V+A I + R S GFGFV +K +A Sbjct: 600 FVKNLNFSTTNERFTEVFKPLDGFVSARIKTKPDPKRPGKTLSMGFGFVDFRTKAQAQAA 659 Query: 406 ISALDGQEMDGRPLRVNVA 350 ++A+DG ++D L V + Sbjct: 660 LAAMDGYKLDQHELVVRAS 678
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 47.8 bits (112), Expect = 3e-05 Identities = 25/93 (26%), Positives = 51/93 (54%), Gaps = 1/93 (1%) Frame = -3 Query: 631 AQRGSRVERPPRQFASSFRA-YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSR 455 +Q+ S+ E+ Q + R+ +VGN+ ++ F + G++ T++YDR TG + Sbjct: 46 SQKLSKEEKHAHQLEADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPK 105 Query: 454 GFGFVTMASKEDLDSAISALDGQEMDGRPLRVN 356 G+G++ S + A+ L+G E+ G+ + V+ Sbjct: 106 GYGYIEFESPAYREKALQ-LNGGELKGKKIAVS 137
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 47.8 bits (112), Expect = 3e-05 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Frame = -3 Query: 499 VNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERP--QRG 329 ++A IV DR+TG S+GFGFV +S ED +A A++ E+DG + ++ A + QRG Sbjct: 577 ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPKGEFQRG 635 Score = 39.7 bits (91), Expect = 0.008 Identities = 20/80 (25%), Positives = 43/80 (53%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 +V NLP++ + + +F EV +V ++E G S+G ++ ++ + + A+ Sbjct: 374 FVKNLPYRVTEDEMKNVFENALEV---RLVLNKE-GSSKGMAYIEFKTEAEAEKALEEKQ 429 Query: 391 GQEMDGRPLRVNVAAERPQR 332 G E+DGR + ++ E+ Q+ Sbjct: 430 GTEVDGRAMVIDYTGEKSQQ 449 Score = 39.3 bits (90), Expect = 0.010 Identities = 20/80 (25%), Positives = 41/80 (51%) Frame = -3 Query: 568 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 389 V NL + A + L ++F + + + GR +G+ FV + ED A+++ + Sbjct: 465 VNNLSYAASEETLQELFKKATSIK----MPQNNQGRPKGYAFVEFPTAEDAKEALNSCNN 520 Query: 388 QEMDGRPLRVNVAAERPQRG 329 E++GR +R+ ++ Q+G Sbjct: 521 TEIEGRAIRLEFSSPSWQKG 540 Score = 32.0 bits (71), Expect = 1.6 Identities = 24/83 (28%), Positives = 40/83 (48%) Frame = -3 Query: 589 ASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDS 410 AS+F +V NL + L E N + R G S+ FG+V S ED+D Sbjct: 278 ASAFSLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVR-IGSSKRFGYVDFLSAEDMDK 336 Query: 409 AISALDGQEMDGRPLRVNVAAER 341 A+ L+G+++ G +++ A + Sbjct: 337 ALQ-LNGKKLMGLEIKLEKAKSK 358
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 47.8 bits (112), Expect = 3e-05 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 9/96 (9%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 + +VGNL + + ++F ++G VV IV R +GFV + D+ AI Sbjct: 87 KIFVGNLTDKTRAPEVRELFQKYGTVVECDIV--------RNYGFVHLDCVGDVQDAIKE 138 Query: 397 LDGQEMDGRPLRVNVAAER---------PQRGF*CG 317 L+G+ +DG+PL+V V+ R P++ + CG Sbjct: 139 LNGRVVDGQPLKVQVSTSRVRPKPGMGDPEQCYRCG 174
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 47.4 bits (111), Expect = 4e-05 Identities = 21/80 (26%), Positives = 41/80 (51%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 +VG + L +FS++G +++ ++YD+ G G+GF++ I L+ Sbjct: 198 FVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYGFISYPLGSQASLCIKELN 257 Query: 391 GQEMDGRPLRVNVAAERPQR 332 G+ ++G L +N ER +R Sbjct: 258 GRTVNGSTLFINYHVERKER 277 Score = 34.3 bits (77), Expect = 0.32 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 20/97 (20%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVY-------------------DRETGRSRGF 449 YV ++P D L + GE+++ ++ D G SRG+ Sbjct: 543 YVKHIPLSWTDEDLYDFYKSFGEIISVKVITVGGSKNKYRQQSNDSSSDNDLPVGSSRGY 602 Query: 448 GFVTMASKEDLDSAISALDGQEMD-GRPLRVNVAAER 341 GFV+ S D AI DG ++ + L V+ A +R Sbjct: 603 GFVSFESPLDAAKAILNTDGYQVSKDQVLSVSFAQKR 639
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 47.4 bits (111), Expect = 4e-05 Identities = 23/73 (31%), Positives = 44/73 (60%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 ++ +LP + D L+QMF G VV+A + D++T S+ FGFV+ + +AI +++ Sbjct: 404 FIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMN 463 Query: 391 GQEMDGRPLRVNV 353 G ++ + L+V + Sbjct: 464 GFQIGMKRLKVQL 476 Score = 31.2 bits (69), Expect = 2.7 Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 + ++G + + ++ + MFS G++ I+ + G SRG FVT ++ +AI A Sbjct: 109 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFTTRTMAQTAIKA 167 Query: 397 L-DGQEMDG 374 + Q M+G Sbjct: 168 MHQAQTMEG 176
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 47.4 bits (111), Expect = 4e-05 Identities = 23/73 (31%), Positives = 44/73 (60%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 ++ +LP + D L+QMF G VV+A + D++T S+ FGFV+ + +AI +++ Sbjct: 404 FIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMN 463 Query: 391 GQEMDGRPLRVNV 353 G ++ + L+V + Sbjct: 464 GFQIGMKRLKVQL 476 Score = 31.2 bits (69), Expect = 2.7 Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 + ++G + + ++ + MFS G++ I+ + G SRG FVT ++ +AI A Sbjct: 109 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFTTRAMAQTAIKA 167 Query: 397 L-DGQEMDG 374 + Q M+G Sbjct: 168 MHQAQTMEG 176
>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 728 Score = 47.4 bits (111), Expect = 4e-05 Identities = 27/73 (36%), Positives = 42/73 (57%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 +V NL ++ +L ++FS G VV A I+ D++ G+SRG G VT + AIS + Sbjct: 205 FVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGIVTFEQSIEAVQAISMFN 263 Query: 391 GQEMDGRPLRVNV 353 GQ + RP+ V + Sbjct: 264 GQLLFDRPMHVKM 276 Score = 44.3 bits (103), Expect = 3e-04 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 1/91 (1%) Frame = -3 Query: 628 QRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEH-GEVVNATIVYDRETGRSRG 452 +RG P +RA++ N+P+ + L + E GEV ++ D E G+SRG Sbjct: 53 KRGGNRFEPYSNPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAE-GKSRG 111 Query: 451 FGFVTMASKEDLDSAISALDGQEMDGRPLRV 359 V +E + A L+ + GRPL+V Sbjct: 112 CAVVEFKMEESMKKAAEVLNKHSLSGRPLKV 142 Score = 39.7 bits (91), Expect = 0.008 Identities = 24/73 (32%), Positives = 37/73 (50%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 +V NLP+ L F+E G V+ A I E G+S+G G V S E + A ++ Sbjct: 654 FVRNLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGVVKFESPEVAERACRMMN 711 Query: 391 GQEMDGRPLRVNV 353 G ++ GR + V + Sbjct: 712 GMKLSGREIDVRI 724
>RX21_DROME (Q24491) RNA-binding protein Rsf1 (RNA-binding protein Rox21)| Length = 197 Score = 47.4 bits (111), Expect = 4e-05 Identities = 26/83 (31%), Positives = 45/83 (54%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 R YVGNL + + L F+++G++ + I ++ GF FV ++D + A Sbjct: 8 RVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNPP-----GFAFVEFEHRDDAEKACDI 62 Query: 397 LDGQEMDGRPLRVNVAAERPQRG 329 L+G E+ G LRV ++ RP++G Sbjct: 63 LNGSELLGSQLRVEISKGRPRQG 85
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 47.0 bits (110), Expect = 5e-05 Identities = 24/83 (28%), Positives = 43/83 (51%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 R +VG + ++ ++ L + FS++G V IV DR G S+G+GF+T ++ED + Sbjct: 34 RIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFITFETQEDAQKILQE 92 Query: 397 LDGQEMDGRPLRVNVAAERPQRG 329 + + L + A + Q G Sbjct: 93 AEKLNYKDKKLNIGPAIRKQQVG 115
>RU17_XENLA (P09406) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 47.0 bits (110), Expect = 5e-05 Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 3/85 (3%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRET---GRSRGFGFVTMASKEDLDSAIS 401 +V + + +S+L + F +G + IVY++ + G+ RG+ F+ + D+ SA Sbjct: 106 FVARVNYDTTESKLRREFEVYGPIKRIHIVYNKGSEGSGKPRGYAFIEYEHERDMHSAYK 165 Query: 400 ALDGQEMDGRPLRVNVAAERPQRGF 326 DG+++DGR + V+V R +G+ Sbjct: 166 HADGKKIDGRRVLVDVERGRTVKGW 190
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 47.0 bits (110), Expect = 5e-05 Identities = 24/78 (30%), Positives = 39/78 (50%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 R ++ N+ + + + ++FS +GE+ + D TG S+GF +V A E+ A Sbjct: 326 RLFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEEAVQAYIE 385 Query: 397 LDGQEMDGRPLRVNVAAE 344 LD Q GR L + A E Sbjct: 386 LDKQIFQGRLLHILAADE 403 Score = 36.6 bits (83), Expect = 0.064 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 5/86 (5%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGR-----SRGFGFVTMASKEDLDSA 407 ++ NL ++ +L F V A + + + S GFGFV +KE + Sbjct: 643 FIKNLNFKTTSQQLTDRFKVFSGFVVAQVKTKPDPKQKNKVLSMGFGFVEFRTKEQATAV 702 Query: 406 ISALDGQEMDGRPLRVNVAAERPQRG 329 ISA+DG +DG +++ ++ + G Sbjct: 703 ISAMDGTVIDGHKIQLKLSHRQGNAG 728 Score = 34.7 bits (78), Expect = 0.24 Identities = 21/84 (25%), Positives = 44/84 (52%), Gaps = 2/84 (2%) Frame = -3 Query: 589 ASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIV--YDRETGRSRGFGFVTMASKEDL 416 A + + V NLP++A + ++F+ G++ + + +D+ +RGF FV ++ Sbjct: 735 AKNGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKS---ARGFAFVEFVLPKEA 791 Query: 415 DSAISALDGQEMDGRPLRVNVAAE 344 ++A+ L G + GR L + A + Sbjct: 792 ENAMDQLQGVHLLGRRLVMQPAEQ 815
>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)| Length = 429 Score = 47.0 bits (110), Expect = 5e-05 Identities = 27/74 (36%), Positives = 41/74 (55%) Frame = -3 Query: 610 ERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMA 431 E+ R +++S +VGNL + + L + FS+ G+VV A I+ R G RG G V Sbjct: 128 EKVNRNYSNSI--FVGNLTYDSTPEDLTEFFSQIGKVVRADIITSR--GHHRGMGTVEFT 183 Query: 430 SKEDLDSAISALDG 389 + +D+D AI DG Sbjct: 184 NSDDVDRAIRQYDG 197 Score = 36.2 bits (82), Expect = 0.084 Identities = 23/74 (31%), Positives = 33/74 (44%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 Y NLP+ S L +F G+V NA + YD + G G V + +D D I L+ Sbjct: 354 YCSNLPFSTAKSDLYDLFETIGKVNNAELRYDSK-GAPTGIAVVEYDNVDDADVCIERLN 412 Query: 391 GQEMDGRPLRVNVA 350 G L ++ A Sbjct: 413 NYNYGGCDLDISYA 426
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 46.6 bits (109), Expect = 6e-05 Identities = 24/87 (27%), Positives = 45/87 (51%) Frame = -3 Query: 619 SRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFV 440 S E+ ++ + R ++ N+ + A + ++FS +GE+ I D TG+S+GF +V Sbjct: 317 SEEEKSLKKIRETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYV 376 Query: 439 TMASKEDLDSAISALDGQEMDGRPLRV 359 + ++ +A LD Q GR L + Sbjct: 377 LFKNADNAATAFVELDKQIFQGRLLHI 403 Score = 36.2 bits (82), Expect = 0.084 Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 2/80 (2%) Frame = -3 Query: 568 VGNLPWQAEDSRLVQMFSEHGEVVNATIV--YDRETGRSRGFGFVTMASKEDLDSAISAL 395 V NLP++A + ++FS G++ + + +D+ +RGF FV ++ ++A+ L Sbjct: 756 VKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKS---ARGFAFVEFLLPKEAENAMDQL 812 Query: 394 DGQEMDGRPLRVNVAAERPQ 335 G + GR L + + P+ Sbjct: 813 QGVHLLGRRLVMEFVEQDPE 832 Score = 35.8 bits (81), Expect = 0.11 Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 5/79 (6%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYD---RETGR--SRGFGFVTMASKEDLDSA 407 ++ NL + +L + F V A + ++ G+ S GFGF +KE ++ Sbjct: 654 FIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKEQANAV 713 Query: 406 ISALDGQEMDGRPLRVNVA 350 ISA++G +DG L++ ++ Sbjct: 714 ISAMEGTILDGHKLQLKLS 732
>SAFB2_HUMAN (Q14151) Scaffold attachment factor B2| Length = 953 Score = 46.6 bits (109), Expect = 6e-05 Identities = 25/78 (32%), Positives = 42/78 (53%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 +V L + L +FS++G+VV A +V + + +R +GFVTM++ ++ IS L Sbjct: 410 WVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCISHLH 469 Query: 391 GQEMDGRPLRVNVAAERP 338 E+ GR + V A P Sbjct: 470 RTELHGRMISVEKAKNEP 487
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 46.6 bits (109), Expect = 6e-05 Identities = 24/79 (30%), Positives = 41/79 (51%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 + ++G L ++ D L F + G +V+ ++ D T RSRGFGF+T + +D A + Sbjct: 32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKS 91 Query: 397 LDGQEMDGRPLRVNVAAER 341 ++DGR + A R Sbjct: 92 RP-HKIDGRVVEPKRAVPR 109 Score = 42.0 bits (97), Expect = 0.002 Identities = 20/66 (30%), Positives = 33/66 (50%) Frame = -3 Query: 601 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 422 P A+ + +VG L ++ + F G +V+ IV D+ETG+ RGF FV + Sbjct: 115 PNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYD 174 Query: 421 DLDSAI 404 +D + Sbjct: 175 PVDKVV 180
>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4| protein) Length = 689 Score = 46.6 bits (109), Expect = 6e-05 Identities = 27/73 (36%), Positives = 42/73 (57%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 +V NL ++ +L ++FS G VV A I+ D++ G+SRG G VT + AIS + Sbjct: 166 FVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFN 224 Query: 391 GQEMDGRPLRVNV 353 GQ + RP+ V + Sbjct: 225 GQLLFDRPMHVKM 237 Score = 44.3 bits (103), Expect = 3e-04 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 1/91 (1%) Frame = -3 Query: 628 QRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEH-GEVVNATIVYDRETGRSRG 452 +RG P +RA++ N+P+ + L + E GEV ++ D E G+SRG Sbjct: 53 KRGGNRFEPYANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAE-GKSRG 111 Query: 451 FGFVTMASKEDLDSAISALDGQEMDGRPLRV 359 V +E + A L+ + GRPL+V Sbjct: 112 CAVVEFKMEESMKKAAEVLNKHSLSGRPLKV 142 Score = 39.7 bits (91), Expect = 0.008 Identities = 24/73 (32%), Positives = 37/73 (50%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 +V NLP+ L F+E G V+ A I E G+S+G G V S E + A ++ Sbjct: 615 FVRNLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGVVKFESPEVAERACRMMN 672 Query: 391 GQEMDGRPLRVNV 353 G ++ GR + V + Sbjct: 673 GMKLSGREIDVRI 685
>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 729 Score = 46.6 bits (109), Expect = 6e-05 Identities = 27/73 (36%), Positives = 42/73 (57%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 +V NL ++ +L ++FS G VV A I+ D++ G+SRG G VT + AIS + Sbjct: 206 FVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFN 264 Query: 391 GQEMDGRPLRVNV 353 GQ + RP+ V + Sbjct: 265 GQLLFDRPMHVKM 277 Score = 44.3 bits (103), Expect = 3e-04 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 1/91 (1%) Frame = -3 Query: 628 QRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEH-GEVVNATIVYDRETGRSRG 452 +RG P +RA++ N+P+ + L + E GEV ++ D E G+SRG Sbjct: 54 KRGGNRFEPYANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAE-GKSRG 112 Query: 451 FGFVTMASKEDLDSAISALDGQEMDGRPLRV 359 V +E + A L+ + GRPL+V Sbjct: 113 CAVVEFKMEESMKKAAEVLNKHSLSGRPLKV 143 Score = 39.7 bits (91), Expect = 0.008 Identities = 24/73 (32%), Positives = 37/73 (50%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 +V NLP+ L F+E G V+ A I E G+S+G G V S E + A ++ Sbjct: 655 FVRNLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGVVKFESPEVAERACRMMN 712 Query: 391 GQEMDGRPLRVNV 353 G ++ GR + V + Sbjct: 713 GMKLSGREIDVRI 725
>U2AF2_SCHPO (P36629) Splicing factor U2AF 59 kDa subunit (U2 auxiliary factor| 59 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF59) Length = 517 Score = 46.2 bits (108), Expect = 8e-05 Identities = 22/79 (27%), Positives = 41/79 (51%) Frame = -3 Query: 586 SSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSA 407 S + Y+ NLP + ++V++ G++++ ++ + G S+GF F + D + A Sbjct: 308 SKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVA 367 Query: 406 ISALDGQEMDGRPLRVNVA 350 IS LDG++ G L A Sbjct: 368 ISGLDGKDTYGNKLHAQFA 386
>RBM8A_MOUSE (Q9CWZ3) RNA-binding protein 8A (RNA-binding motif protein 8A)| (Ribonucleoprotein RBM8A) Length = 174 Score = 46.2 bits (108), Expect = 8e-05 Identities = 22/85 (25%), Positives = 47/85 (55%) Frame = -3 Query: 610 ERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMA 431 E P++ + +V + +A + + F+E+GE+ N + DR TG +G+ V Sbjct: 63 EPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYE 122 Query: 430 SKEDLDSAISALDGQEMDGRPLRVN 356 + ++ +A+ L+GQ++ G+P+ V+ Sbjct: 123 TYKEAQAAMEGLNGQDLMGQPISVD 147
>RBM8A_HUMAN (Q9Y5S9) RNA-binding protein 8A (RNA-binding motif protein 8A)| (Ribonucleoprotein RBM8A) (RNA-binding protein Y14) (Binder of OVCA1-1) (BOV-1) Length = 174 Score = 46.2 bits (108), Expect = 8e-05 Identities = 22/85 (25%), Positives = 47/85 (55%) Frame = -3 Query: 610 ERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMA 431 E P++ + +V + +A + + F+E+GE+ N + DR TG +G+ V Sbjct: 63 EPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYE 122 Query: 430 SKEDLDSAISALDGQEMDGRPLRVN 356 + ++ +A+ L+GQ++ G+P+ V+ Sbjct: 123 TYKEAQAAMEGLNGQDLMGQPISVD 147
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 46.2 bits (108), Expect = 8e-05 Identities = 23/73 (31%), Positives = 37/73 (50%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 R ++ N+ + A + Q+FS +GE+ + D TG+S+GF +V E +A Sbjct: 302 RLFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAYIE 361 Query: 397 LDGQEMDGRPLRV 359 LD Q GR L + Sbjct: 362 LDKQIFQGRLLHI 374 Score = 36.6 bits (83), Expect = 0.064 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 5/79 (6%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVY-----DRETGRSRGFGFVTMASKEDLDSA 407 +V NL + ++L + F V A + + + S GFGF+ +KE + Sbjct: 615 FVKNLNFSTTSAQLAEKFKPFSGFVVAQVKTKPDPKNSDKKLSMGFGFIEFRTKEQAGAV 674 Query: 406 ISALDGQEMDGRPLRVNVA 350 I+A+DG +DG +++ ++ Sbjct: 675 IAAMDGAVIDGHKIQLKIS 693 Score = 35.0 bits (79), Expect = 0.19 Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 2/82 (2%) Frame = -3 Query: 583 SFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIV--YDRETGRSRGFGFVTMASKEDLDS 410 S + V NLP++A + ++FS G++ + + +D+ +RGF FV + ++ Sbjct: 711 SGKIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKS---ARGFAFVEFLLPSEAEN 767 Query: 409 AISALDGQEMDGRPLRVNVAAE 344 A+ L G + GR L + A + Sbjct: 768 AMDQLQGVHLLGRRLVMQYAEQ 789
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 45.8 bits (107), Expect = 1e-04 Identities = 22/65 (33%), Positives = 35/65 (53%) Frame = -3 Query: 601 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 422 P A + +VG L + L++ FS+ G V A I+ D+++G+ RGFGFV + + Sbjct: 91 PGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHD 150 Query: 421 DLDSA 407 D A Sbjct: 151 AADKA 155 Score = 44.7 bits (104), Expect = 2e-04 Identities = 25/79 (31%), Positives = 43/79 (54%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 + ++G L Q +S L F G + + +V + +T RSR FGFVT ++ E+ D+A++A Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67 Query: 397 LDGQEMDGRPLRVNVAAER 341 +DG + + A R Sbjct: 68 -SPHAVDGNTVELKRAVSR 85
>REFP2_MOUSE (Q9JJW6) RNA and export factor-binding protein 2| Length = 218 Score = 45.8 bits (107), Expect = 1e-04 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 2/81 (2%) Frame = -3 Query: 568 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 389 V NL + D+ + ++F+E G + A + YDR +GRS G V + D A+ G Sbjct: 79 VSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKG 137 Query: 388 QEMDGRPLRVNVAAER--PQR 332 +DGRP+ + + A + PQR Sbjct: 138 VPLDGRPMDIQLVASQIDPQR 158
>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3| subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3g) Length = 256 Score = 45.8 bits (107), Expect = 1e-04 Identities = 25/70 (35%), Positives = 37/70 (52%) Frame = -3 Query: 568 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 389 V NLP + + L +F + G V+ I D+ TG +GF FVT S++D AI+ L+ Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELND 239 Query: 388 QEMDGRPLRV 359 M L+V Sbjct: 240 IRMYHMVLKV 249
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 45.8 bits (107), Expect = 1e-04 Identities = 24/81 (29%), Positives = 42/81 (51%) Frame = -3 Query: 583 SFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 404 S R +V NL ++ ++S L +FS G++ + +D S+GF +V A + A Sbjct: 294 SARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAY 353 Query: 403 SALDGQEMDGRPLRVNVAAER 341 LDG+ GR L + A+++ Sbjct: 354 RNLDGKIFQGRLLHILPASQK 374 Score = 39.3 bits (90), Expect = 0.010 Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 2/99 (2%) Frame = -3 Query: 634 AAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIV--YDRETGR 461 AA+ + + + A + + NLP+QA + +F +G++ + + +DR Sbjct: 679 AAEERRKEDTAKKIAARRTKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRS--- 735 Query: 460 SRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAE 344 +RGFGF S + ++A+ AL + GR L + A E Sbjct: 736 ARGFGFADFVSAREAENAMDALKNTHLLGRRLVLEFANE 774
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 45.8 bits (107), Expect = 1e-04 Identities = 27/98 (27%), Positives = 43/98 (43%) Frame = -3 Query: 634 AAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSR 455 A Q + ++ Q S R ++ NLP+ A ++ F G V I D++T S+ Sbjct: 296 AQQAAEKDQKLVDQIMESGRLFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQTKASK 355 Query: 454 GFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAER 341 G FV+ + +A A DG GR L + A + Sbjct: 356 GLAFVSFSDPAHALAAYRAKDGSTFQGRLLHLLPAVNK 393 Score = 37.4 bits (85), Expect = 0.038 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 2/91 (2%) Frame = -3 Query: 631 AQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIV--YDRETGRS 458 A+R + S + + NLP++A + +FS G++ + + +D T Sbjct: 702 ARRNAEASTTSISSGGSTKILIKNLPFEATKRDIRDLFSSQGQLKSVRLPKKFDNTT--- 758 Query: 457 RGFGFVTMASKEDLDSAISALDGQEMDGRPL 365 RGFGFV ++ + SA+ AL + GR L Sbjct: 759 RGFGFVEYSTVREAQSAMEALKHTHLLGRHL 789 Score = 36.6 bits (83), Expect = 0.064 Identities = 23/76 (30%), Positives = 38/76 (50%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 R V LP D+RL + FS+ G V + ++ R G SR FGFV S+++ A+ Sbjct: 3 RLIVRGLPSYLTDARLREHFSQKGAVTDVKLM-RRPDGTSRKFGFVGYRSEQEAQQALDY 61 Query: 397 LDGQEMDGRPLRVNVA 350 + +D + + +A Sbjct: 62 FNRTFIDTSRISIELA 77 Score = 33.5 bits (75), Expect = 0.54 Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGR-----SRGFGFVTMASKEDLDSA 407 YV NL + D RL F + A I + R S G+GFV S + +A Sbjct: 624 YVKNLSFSTTDERLTAFFHGLSDFAFARIQTKPDPRRPGARLSMGYGFVGFKSIDAARTA 683 Query: 406 ISALDGQEMDGRPLRVNVA 350 A+DG+ +D L V A Sbjct: 684 QKAMDGKVLDAHTLVVTFA 702
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 45.4 bits (106), Expect = 1e-04 Identities = 21/80 (26%), Positives = 42/80 (52%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 +VGNL + D L + F G++V + ++G+ +GF F+ ++E + + Sbjct: 242 FVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNELKDKS 301 Query: 391 GQEMDGRPLRVNVAAERPQR 332 +++ GRPLR+ +R +R Sbjct: 302 CRKIAGRPLRMEYGEDRSKR 321
>THOC4_MOUSE (O08583) THO complex subunit 4 (Tho4) (RNA and export| factor-binding protein 1) (REF1-I) (Ally of AML-1 and LEF-1) (Aly/REF) Length = 254 Score = 45.4 bits (106), Expect = 1e-04 Identities = 24/76 (31%), Positives = 40/76 (52%) Frame = -3 Query: 568 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 389 V NL + D+ + ++F+E G + A + YDR +GRS G V K D A+ +G Sbjct: 108 VSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNG 166 Query: 388 QEMDGRPLRVNVAAER 341 +DGRP+ + + + Sbjct: 167 VPLDGRPMNIQLVTSQ 182
>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) Length = 931 Score = 45.4 bits (106), Expect = 1e-04 Identities = 29/97 (29%), Positives = 49/97 (50%) Frame = -3 Query: 628 QRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGF 449 +R SR E+ +F +V L + L +FS +G+VV A +V + + +R + Sbjct: 414 KRLSREEKGRSSCGRNF--WVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCY 471 Query: 448 GFVTMASKEDLDSAISALDGQEMDGRPLRVNVAAERP 338 GFVTM++ E+ I+ L E+ G+ + V A P Sbjct: 472 GFVTMSTAEEATKCINHLHKTELHGKMISVEKAKSEP 508
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 45.4 bits (106), Expect = 1e-04 Identities = 27/93 (29%), Positives = 47/93 (50%) Frame = -3 Query: 613 VERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTM 434 +ER QF F +G L ++ + L + + G + + ++ D + RSRGFGFVT Sbjct: 1 MEREKEQFRKLF---IGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTF 57 Query: 433 ASKEDLDSAISALDGQEMDGRPLRVNVAAERPQ 335 + ++D+A+ A +DGR + A R + Sbjct: 58 SCMNEVDAAM-ATRPHTIDGRVVEPKRAVAREE 89 Score = 43.9 bits (102), Expect = 4e-04 Identities = 17/58 (29%), Positives = 34/58 (58%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAI 404 + +VG + E+ L + F E+G++ + I+ D+++G+ RGF FVT + +D + Sbjct: 101 KLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIV 158
>RBM8A_DROME (Q9V535) RNA-binding protein 8A (Protein tsunagi)| Length = 165 Score = 45.4 bits (106), Expect = 1e-04 Identities = 22/86 (25%), Positives = 49/86 (56%) Frame = -3 Query: 613 VERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTM 434 +E P++ + +V ++ +A++ + + F ++GE+ N + DR TG S+G+ V Sbjct: 62 LEPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEY 121 Query: 433 ASKEDLDSAISALDGQEMDGRPLRVN 356 + + +A AL+G E+ G+ ++V+ Sbjct: 122 ETHKQALAAKEALNGAEIMGQTIQVD 147
>THOC4_HUMAN (Q86V81) THO complex subunit 4 (Tho4) (Ally of AML-1 and LEF-1)| (Transcriptional coactivator Aly/REF) (bZIP-enhancing factor BEF) Length = 256 Score = 45.4 bits (106), Expect = 1e-04 Identities = 24/76 (31%), Positives = 40/76 (52%) Frame = -3 Query: 568 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 389 V NL + D+ + ++F+E G + A + YDR +GRS G V K D A+ +G Sbjct: 109 VSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNG 167 Query: 388 QEMDGRPLRVNVAAER 341 +DGRP+ + + + Sbjct: 168 VPLDGRPMNIQLVTSQ 183
>SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) (HSP27 estrogen response element-TATA box-binding protein) (HSP27 ERE-TATA-binding protein) Length = 915 Score = 45.1 bits (105), Expect = 2e-04 Identities = 24/78 (30%), Positives = 42/78 (53%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 +V L + L +FS++G+VV A +V + + +R +GFVTM++ E+ I+ L Sbjct: 409 WVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLH 468 Query: 391 GQEMDGRPLRVNVAAERP 338 E+ G+ + V A P Sbjct: 469 KTELHGKMISVEKAKNEP 486
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 45.1 bits (105), Expect = 2e-04 Identities = 26/77 (33%), Positives = 38/77 (49%) Frame = -3 Query: 589 ASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDS 410 A S R +V NL + + + L ++FS +G + D T + +GF FVT E Sbjct: 397 ADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVK 456 Query: 409 AISALDGQEMDGRPLRV 359 A + +DGQ GR L V Sbjct: 457 AYAEVDGQVFQGRMLHV 473 Score = 42.7 bits (99), Expect = 9e-04 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%) Frame = -3 Query: 631 AQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRE-TGRSR 455 A +R ++ P++ +S + V N+P+QA + ++FS GE+ + TG R Sbjct: 808 ALTSTRKKQVPKKQTTS-KILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHR 866 Query: 454 GFGFVTMASKEDLDSAISAL 395 GFGFV +K+D A +AL Sbjct: 867 GFGFVDFITKQDAKKAFNAL 886 Score = 38.1 bits (87), Expect = 0.022 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGR---SRGFGFVTMASKEDLDSAIS 401 ++ NL + + L +FS+ G + + TI + S GFGFV E A+ Sbjct: 725 FIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALK 784 Query: 400 ALDGQEMDGRPLRVNVA 350 L G +DG L V ++ Sbjct: 785 QLQGHTVDGHKLEVRIS 801 Score = 35.4 bits (80), Expect = 0.14 Identities = 17/59 (28%), Positives = 35/59 (59%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS 401 R V NLP ++ R Q+F+ G + + ++ + ++ G+ R FGF+ S+E+ +A++ Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQAALN 60
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 45.1 bits (105), Expect = 2e-04 Identities = 24/77 (31%), Positives = 42/77 (54%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 +VG LP A +L ++FS+ G V +V ++ + RGFG+VT + ED+ A+ + Sbjct: 6 FVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI- 64 Query: 391 GQEMDGRPLRVNVAAER 341 +G + V VA ++ Sbjct: 65 -TTFEGCKINVTVAKKK 80 Score = 40.0 bits (92), Expect = 0.006 Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 6/85 (7%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 ++ NL + +E+ L ++ + GE+ IV +T S+G F ++E + A Sbjct: 337 FIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLLAAS 396 Query: 391 ------GQEMDGRPLRVNVAAERPQ 335 G ++DGR L+V++A R + Sbjct: 397 PENEAGGLKLDGRQLKVDLAVTRDE 421 Score = 37.7 bits (86), Expect = 0.029 Identities = 21/79 (26%), Positives = 41/79 (51%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 R + NL ++ + L +F++ G V+ I + G+ RGFGFV + + A+ Sbjct: 114 RLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPR-KPDGKMRGFGFVQFKNLLEAGKALKG 172 Query: 397 LDGQEMDGRPLRVNVAAER 341 ++ +E+ GR + V+ A + Sbjct: 173 MNMKEIKGRTVAVDWAVAK 191
>NCBP2_MOUSE (Q9CQ49) Nuclear cap-binding protein subunit 2 (20 kDa nuclear| cap-binding protein) (NCBP 20 kDa subunit) (CBP20) Length = 156 Score = 44.7 bits (104), Expect = 2e-04 Identities = 22/85 (25%), Positives = 44/85 (51%) Frame = -3 Query: 610 ERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMA 431 E + S YVGNL + + ++ ++FS+ G++ + D+ + GF FV Sbjct: 30 EEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYY 89 Query: 430 SKEDLDSAISALDGQEMDGRPLRVN 356 S+ D ++A+ ++G +D R +R + Sbjct: 90 SRADAENAMRYINGTRLDDRIIRTD 114
>NCBP2_HUMAN (P52298) Nuclear cap-binding protein subunit 2 (20 kDa nuclear| cap-binding protein) (NCBP 20 kDa subunit) (CBP20) (NCBP-interacting protein 1) (NIP1) (Cell proliferation-inducing gene 55 protein) Length = 156 Score = 44.7 bits (104), Expect = 2e-04 Identities = 22/85 (25%), Positives = 44/85 (51%) Frame = -3 Query: 610 ERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMA 431 E + S YVGNL + + ++ ++FS+ G++ + D+ + GF FV Sbjct: 30 EEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYY 89 Query: 430 SKEDLDSAISALDGQEMDGRPLRVN 356 S+ D ++A+ ++G +D R +R + Sbjct: 90 SRADAENAMRYINGTRLDDRIIRTD 114
>NCBP2_BOVIN (Q3ZBJ1) Nuclear cap-binding protein subunit 2| Length = 156 Score = 44.7 bits (104), Expect = 2e-04 Identities = 22/85 (25%), Positives = 44/85 (51%) Frame = -3 Query: 610 ERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMA 431 E + S YVGNL + + ++ ++FS+ G++ + D+ + GF FV Sbjct: 30 EEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYY 89 Query: 430 SKEDLDSAISALDGQEMDGRPLRVN 356 S+ D ++A+ ++G +D R +R + Sbjct: 90 SRADAENAMRYINGTRLDDRIIRTD 114
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 44.7 bits (104), Expect = 2e-04 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Frame = -3 Query: 619 SRVERP-PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGF 443 S + RP + + R +VGNLP + ++F+++GE I + +GFGF Sbjct: 275 SLLRRPGEKTYTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFI------NKGKGFGF 328 Query: 442 VTMASKEDLDSAISALDGQEMDGRPLRVNVA 350 + + S+ + A + LD M GR LRV A Sbjct: 329 IKLESRALAEIAKAELDDTPMRGRQLRVRFA 359 Score = 30.8 bits (68), Expect = 3.5 Identities = 18/48 (37%), Positives = 25/48 (52%) Frame = -3 Query: 568 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASK 425 V NL + L + FS+ G + A ++ D + GRS G G V ASK Sbjct: 367 VRNLSPYVSNELLEEAFSQFGPIERAVVIVD-DRGRSTGKGIVEFASK 413
>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa DNA-pairing protein) (hPOMp Length = 707 Score = 44.7 bits (104), Expect = 2e-04 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Frame = -3 Query: 619 SRVERP-PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGF 443 S + RP + + R +VGNLP + ++F+++GE I + +GFGF Sbjct: 283 SLLRRPGEKTYTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFI------NKGKGFGF 336 Query: 442 VTMASKEDLDSAISALDGQEMDGRPLRVNVA 350 + + S+ + A + LD M GR LRV A Sbjct: 337 IKLESRALAEIAKAELDDTPMRGRQLRVRFA 367 Score = 30.8 bits (68), Expect = 3.5 Identities = 18/48 (37%), Positives = 25/48 (52%) Frame = -3 Query: 568 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASK 425 V NL + L + FS+ G + A ++ D + GRS G G V ASK Sbjct: 375 VRNLSPYVSNELLEEAFSQFGPIERAVVIVD-DRGRSTGKGIVEFASK 421
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 44.3 bits (103), Expect = 3e-04 Identities = 22/73 (30%), Positives = 40/73 (54%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 R ++ NL + A++ Q+FS++GE+ + + +TG+ +GF V E+ +A A Sbjct: 302 RLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPENAIAAYEA 361 Query: 397 LDGQEMDGRPLRV 359 DG+ GR L + Sbjct: 362 QDGKIFQGRLLHI 374 Score = 39.3 bits (90), Expect = 0.010 Identities = 25/94 (26%), Positives = 43/94 (45%) Frame = -3 Query: 631 AQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRG 452 + RG E + A + + NLP++A + ++F G + + + SRG Sbjct: 686 SNRGQDEETTETKKAIDSKILIKNLPFEATKKDVQKLFGAFGSLKTVRVP-KKFNSESRG 744 Query: 451 FGFVTMASKEDLDSAISALDGQEMDGRPLRVNVA 350 F F S ++ + A+SAL G + GR L + A Sbjct: 745 FAFAEYVSAKEAEHAMSALQGTHLLGRRLVLQYA 778 Score = 38.1 bits (87), Expect = 0.022 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 5/96 (5%) Frame = -3 Query: 622 GSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGR-----S 458 GS ERP +S +V NL ++ L F + A + ++ S Sbjct: 594 GSNDERPA---TASTSVFVKNLNFKTTSRVLTDAFKALDGFLVAQVKMKPDSKNKGKFLS 650 Query: 457 RGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVA 350 GFGFV +SKE + A A+DG +DG L++ ++ Sbjct: 651 MGFGFVEFSSKEAAEIAQKAMDGHVLDGHKLQLKIS 686
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 44.3 bits (103), Expect = 3e-04 Identities = 24/77 (31%), Positives = 42/77 (54%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 +VG LP A +L ++FS+ G V +V ++ + RGFG+VT + ED+ A+ + Sbjct: 6 FVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI- 64 Query: 391 GQEMDGRPLRVNVAAER 341 +G + V VA ++ Sbjct: 65 -TTFEGCKIDVTVAKKK 80
>IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (Eif3p42) (eIF3g) Length = 320 Score = 43.9 bits (102), Expect = 4e-04 Identities = 27/95 (28%), Positives = 47/95 (49%) Frame = -3 Query: 634 AAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSR 455 A++RG ++ P R+ + V NL ++ L ++F G + + D+ TG+S+ Sbjct: 222 ASRRGESMQ-PNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSK 280 Query: 454 GFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVA 350 GF F++ +ED AI+ + G D L V A Sbjct: 281 GFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 315
>IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (eIF3g) Length = 320 Score = 43.9 bits (102), Expect = 4e-04 Identities = 27/95 (28%), Positives = 47/95 (49%) Frame = -3 Query: 634 AAQRGSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSR 455 A++RG ++ P R+ + V NL ++ L ++F G + + D+ TG+S+ Sbjct: 222 ASRRGESMQ-PNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSK 280 Query: 454 GFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVA 350 GF F++ +ED AI+ + G D L V A Sbjct: 281 GFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 315
>RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) (Suppressor of CDC2 with RNA-binding motif 2) Length = 406 Score = 43.5 bits (101), Expect = 5e-04 Identities = 23/79 (29%), Positives = 38/79 (48%) Frame = -3 Query: 622 GSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGF 443 G + + +Q Y+ NLP ++ L M G+V++ I+ D +G SRG GF Sbjct: 127 GVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRD-SSGTSRGVGF 185 Query: 442 VTMASKEDLDSAISALDGQ 386 M S E ++ I +G+ Sbjct: 186 ARMESTEKCEAVIGHFNGK 204 Score = 42.7 bits (99), Expect = 9e-04 Identities = 20/64 (31%), Positives = 33/64 (51%) Frame = -3 Query: 586 SSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSA 407 S Y+ LP D LV++ +G++V+ + D+ T + +G+GFV S A Sbjct: 60 SKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKA 119 Query: 406 ISAL 395 +SAL Sbjct: 120 VSAL 123
>TRA2_DROME (P19018) Transformer-2 sex-determining protein| Length = 264 Score = 43.1 bits (100), Expect = 7e-04 Identities = 20/57 (35%), Positives = 34/57 (59%) Frame = -3 Query: 526 QMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVN 356 ++F+++G + +V D +T RSRGF F+ D +A + G E+DGR +RV+ Sbjct: 115 ELFNKYGPIERIQMVIDAQTQRSRGFCFIYFEKLSDARAAKDSCSGIEVDGRRIRVD 171
>CPSF7_MOUSE (Q8BTV2) Cleavage and polyadenylation specificity factor 7| Length = 471 Score = 43.1 bits (100), Expect = 7e-04 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHG--EVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 YVG+ W D +L+Q+ G +VV +R G+S+G+ V +AS+ + + Sbjct: 85 YVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLEL 144 Query: 397 LDGQEMDGRPLRVNVAAER 341 L G+ ++G + V A + Sbjct: 145 LPGKVLNGEKVDVRPATRQ 163
>CPSF7_HUMAN (Q8N684) Cleavage and polyadenylation specificity factor 7| (Cleavage and polyadenylation specificity factor 59 kDa subunit) (CPSF 59 kDa subunit) (Pre-mRNA cleavage factor Im 59-kDa subunit) Length = 471 Score = 43.1 bits (100), Expect = 7e-04 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHG--EVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 YVG+ W D +L+Q+ G +VV +R G+S+G+ V +AS+ + + Sbjct: 85 YVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLEL 144 Query: 397 LDGQEMDGRPLRVNVAAER 341 L G+ ++G + V A + Sbjct: 145 LPGKVLNGEKVDVRPATRQ 163
>CPSF7_RAT (Q5XI29) Cleavage and polyadenylation specificity factor 7| Length = 462 Score = 43.1 bits (100), Expect = 7e-04 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHG--EVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 YVG+ W D +L+Q+ G +VV +R G+S+G+ V +AS+ + + Sbjct: 85 YVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLEL 144 Query: 397 LDGQEMDGRPLRVNVAAER 341 L G+ ++G + V A + Sbjct: 145 LPGKVLNGEKVDVRPATRQ 163
>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) Length = 403 Score = 43.1 bits (100), Expect = 7e-04 Identities = 22/79 (27%), Positives = 38/79 (48%) Frame = -3 Query: 622 GSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGF 443 G + + +Q Y+ NLP ++ L M G+V++ ++ D +G SRG GF Sbjct: 127 GVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRVLRD-SSGASRGVGF 185 Query: 442 VTMASKEDLDSAISALDGQ 386 M S E ++ I +G+ Sbjct: 186 ARMESTEKCEAVIGHFNGK 204 Score = 42.7 bits (99), Expect = 9e-04 Identities = 20/64 (31%), Positives = 33/64 (51%) Frame = -3 Query: 586 SSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSA 407 S Y+ LP D LV++ +G++V+ + D+ T + +G+GFV S A Sbjct: 60 SKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKA 119 Query: 406 ISAL 395 +SAL Sbjct: 120 VSAL 123
>TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 42.7 bits (99), Expect = 9e-04 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 3/79 (3%) Frame = -3 Query: 559 LPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAIS---ALDG 389 LPW+ + L + FS GEV+ + D +TG S+GFGFV E +S +DG Sbjct: 111 LPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDG 170 Query: 388 QEMDGRPLRVNVAAERPQR 332 + D + + + P R Sbjct: 171 RWCDCKLPNSKQSQDEPLR 189
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 42.7 bits (99), Expect = 9e-04 Identities = 18/64 (28%), Positives = 34/64 (53%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 +VG +P + LV +F + G + + ++ D +G++RG+ F+T KE A+ D Sbjct: 168 FVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCD 227 Query: 391 GQEM 380 E+ Sbjct: 228 SYEI 231
>RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interacting protein 2| Length = 383 Score = 42.7 bits (99), Expect = 9e-04 Identities = 24/85 (28%), Positives = 41/85 (48%) Frame = -3 Query: 622 GSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGF 443 G + + +Q Y+ NLP ++ L M G+V++ I+ D +G SRG GF Sbjct: 123 GVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRD-TSGASRGVGF 181 Query: 442 VTMASKEDLDSAISALDGQEMDGRP 368 M S E ++ I+ +G+ + P Sbjct: 182 ARMESTEKCEAIITHFNGKYIKTPP 206
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 42.7 bits (99), Expect = 9e-04 Identities = 24/82 (29%), Positives = 40/82 (48%) Frame = -3 Query: 577 RAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISA 398 + ++G L + L + + G+VV+ ++ D T RSRGFGF+T +D A Sbjct: 33 KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRA-QE 91 Query: 397 LDGQEMDGRPLRVNVAAERPQR 332 +DG+ + A RP+R Sbjct: 92 NRPHIIDGKTVEAKRALPRPER 113 Score = 40.4 bits (93), Expect = 0.004 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Frame = -3 Query: 616 RVERPPRQFASSFRA-YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFV 440 R ER R+ S + +VG L ++ L + F + G VV+ ++ D+ TG+ RGF FV Sbjct: 110 RPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFV 169 Query: 439 TMASKEDLDSAI 404 + +D AI Sbjct: 170 EFDDYDAVDKAI 181
>RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 262 Score = 42.7 bits (99), Expect = 9e-04 Identities = 21/75 (28%), Positives = 42/75 (56%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 +VGNL + + L ++F + G V+ I D++ G+ + F FV + + A++ L+ Sbjct: 13 FVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKPKQFAFVNFKHEVSVPYAMNLLN 71 Query: 391 GQEMDGRPLRVNVAA 347 G ++ GRP+++ A Sbjct: 72 GIKLFGRPIKIQFRA 86
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 42.7 bits (99), Expect = 9e-04 Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 5/129 (3%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 +VG +P + LV +F + G + + ++ D TG +RG+ FVT +KE A+ + Sbjct: 75 FVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYN 134 Query: 391 GQEM-DGRPLRVNVAAERPQRGF*CGAAAESMAWRFSWTHGNTAEMLLQK----TEACHH 227 E+ G+ + V C + A + + S T E +L++ TE Sbjct: 135 NHEIRSGKHIGV------------CISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTD 182 Query: 226 LKLPH*PPD 200 + L H P D Sbjct: 183 VILYHQPDD 191
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 42.7 bits (99), Expect = 9e-04 Identities = 24/73 (32%), Positives = 38/73 (52%) Frame = -3 Query: 568 VGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 389 V LP +D L +F G + I+ D +TG S G+GFV S+ D AI+ L+G Sbjct: 82 VNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNLNG 141 Query: 388 QEMDGRPLRVNVA 350 + + ++V+ A Sbjct: 142 ITVRNKRIKVSFA 154
>RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interacting protein 2| (Suppressor of CDC2 with RNA-binding motif 3) Length = 407 Score = 42.7 bits (99), Expect = 9e-04 Identities = 24/85 (28%), Positives = 41/85 (48%) Frame = -3 Query: 622 GSRVERPPRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGF 443 G + + +Q Y+ NLP ++ L M G+V++ I+ D +G SRG GF Sbjct: 121 GVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRD-TSGTSRGVGF 179 Query: 442 VTMASKEDLDSAISALDGQEMDGRP 368 M S E ++ I+ +G+ + P Sbjct: 180 ARMESTEKCEAIITHFNGKYIKTPP 204
>NOP12_SCHPO (O13741) Nucleolar protein 12| Length = 438 Score = 42.7 bits (99), Expect = 9e-04 Identities = 21/71 (29%), Positives = 38/71 (53%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 +VGNL ++AE+ L + F + G + IV D +T +GF ++ +D A+ + Sbjct: 273 FVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLNE 332 Query: 391 GQEMDGRPLRV 359 + +GR LR+ Sbjct: 333 KKMPEGRTLRI 343
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 42.7 bits (99), Expect = 9e-04 Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 5/129 (3%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 +VG +P + LV +F + G + + ++ D TG +RG+ FVT +KE A+ + Sbjct: 165 FVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYN 224 Query: 391 GQEM-DGRPLRVNVAAERPQRGF*CGAAAESMAWRFSWTHGNTAEMLLQK----TEACHH 227 E+ G+ + V C + A + + S T E +L++ TE Sbjct: 225 NHEIRSGKHIGV------------CISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTD 272 Query: 226 LKLPH*PPD 200 + L H P D Sbjct: 273 VILYHQPDD 281
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 42.7 bits (99), Expect = 9e-04 Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 5/129 (3%) Frame = -3 Query: 571 YVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALD 392 +VG +P + LV +F + G + + ++ D TG +RG+ FVT +KE A+ + Sbjct: 165 FVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYN 224 Query: 391 GQEM-DGRPLRVNVAAERPQRGF*CGAAAESMAWRFSWTHGNTAEMLLQK----TEACHH 227 E+ G+ + V C + A + + S T E +L++ TE Sbjct: 225 NHEIRSGKHIGV------------CISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTD 272 Query: 226 LKLPH*PPD 200 + L H P D Sbjct: 273 VILYHQPDD 281 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,960,214 Number of Sequences: 219361 Number of extensions: 1939240 Number of successful extensions: 6092 Number of sequences better than 10.0: 429 Number of HSP's better than 10.0 without gapping: 5570 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6044 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5938641176 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
