ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags38c11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CIPK1_ARATH (Q8RWC9) CBL-interacting serine/threonine-protein ki... 91 2e-18
2CIPK1_ORYSA (Q6X4A2) CIPK-like protein 1 (EC 2.7.11.1) (OsCK1) 60 4e-09
3CPK15_ARATH (P92937) CBL-interacting serine/threonine-protein ki... 35 0.13
4YCF1_EPIVI (Q00383) Hypothetical 208 kDa protein ycf1 (ORF 1738) 34 0.29
5LEPR_MOUSE (P48356) Leptin receptor precursor (LEP-R) (OB recept... 32 1.9
6SC5A7_DROME (Q9VE46) High-affinity choline transporter 1 30 5.5
7MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing prote... 30 7.2
8GTHB2_CLUPA (Q9YGH2) Gonadotropin beta-2 subunit precursor (Gona... 29 9.4

>CIPK1_ARATH (Q8RWC9) CBL-interacting serine/threonine-protein kinase 1 (EC|
           2.7.11.1) (SOS2-like protein kinase PKS13) (SNF1-related
           kinase 3.16)
          Length = 444

 Score = 91.3 bits (225), Expect = 2e-18
 Identities = 53/103 (51%), Positives = 65/103 (63%)
 Frame = -3

Query: 607 VSERKIRFASNYPPXYLFEKIESNVINMGFQVQKNNGKLKVIQERKGPTNPRGHGSLLIS 428
           VSER+IRF SN     L EKIE+ V  MGF VQK + KL+V QE +   N +G   L ++
Sbjct: 341 VSERRIRFTSNSSAKDLLEKIETAVTEMGFSVQKKHAKLRVKQEER---NQKGQVGLSVT 397

Query: 427 AEVFEINESLYVVELKRSCGDCSLYRQLCATLSDDLGICKSQQ 299
           AEVFEI  SL VVEL++S GD  LYRQL   L  D+G    +Q
Sbjct: 398 AEVFEIKPSLNVVELRKSYGDSCLYRQLYERLLKDVGTSSPEQ 440



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>CIPK1_ORYSA (Q6X4A2) CIPK-like protein 1 (EC 2.7.11.1) (OsCK1)|
          Length = 449

 Score = 60.5 bits (145), Expect = 4e-09
 Identities = 34/94 (36%), Positives = 54/94 (57%)
 Frame = -3

Query: 601 ERKIRFASNYPPXYLFEKIESNVINMGFQVQKNNGKLKVIQERKGPTNPRGHGSLLISAE 422
           +R+ RF S  PP  +  KIE     +GF +QK N K+++   + G       G+L ++ E
Sbjct: 343 KRETRFTSQCPPKEIITKIEEAAKPLGFDIQKKNYKMRMENLKAGRK-----GNLNVATE 397

Query: 421 VFEINESLYVVELKRSCGDCSLYRQLCATLSDDL 320
           VF++  SL+VVELK++ GD   +++   TLS  L
Sbjct: 398 VFQVAPSLHVVELKKAKGDTLEFQKFYRTLSTQL 431



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>CPK15_ARATH (P92937) CBL-interacting serine/threonine-protein kinase 15 (EC|
           2.7.11.1) (Serine/threonine-protein kinase ATPK10)
           (SOS2-like protein kinase PKS3) (SOS-interacting protein
           2) (SNF1-related kinase 3.1)
          Length = 421

 Score = 35.4 bits (80), Expect = 0.13
 Identities = 23/86 (26%), Positives = 45/86 (52%)
 Frame = -3

Query: 601 ERKIRFASNYPPXYLFEKIESNVINMGFQVQKNNGKLKVIQERKGPTNPRGHGSLLISAE 422
           + ++RF SN     + EK+     ++  +V+K   + +V    +         + ++ AE
Sbjct: 328 KEEMRFTSNREASEITEKLVEIGKDLKMKVRKKEHEWRVKMSAE---------ATVVEAE 378

Query: 421 VFEINESLYVVELKRSCGDCSLYRQL 344
           VFEI  S ++V LK+S GD + Y+++
Sbjct: 379 VFEIAPSYHMVVLKKSGGDTAEYKRV 404



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>YCF1_EPIVI (Q00383) Hypothetical 208 kDa protein ycf1 (ORF 1738)|
          Length = 1738

 Score = 34.3 bits (77), Expect = 0.29
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = -3

Query: 547  IESNVINMGFQVQKNNGKLKVIQERKGPTNPRGHGSLLISAEVFEINES 401
            I++ ++ + F + KN+ K   I E+KGPT     GS+LI ++  +I ES
Sbjct: 1440 IKNKLLFINFTINKNSSK--TINEKKGPTGREDLGSVLILSQKKDIEES 1486



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>LEPR_MOUSE (P48356) Leptin receptor precursor (LEP-R) (OB receptor) (OB-R)|
           (B219) (CD295 antigen)
          Length = 1162

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
 Frame = +3

Query: 267 SSCLMESFFXSCWLLHIPKSSESVAHSCLYREQSPH-DLFSSTT*RDSLISNTSAEINND 443
           S  ++E+ F S  + ++P+ S++V H C   EQ  +    +  T   +L S   A +   
Sbjct: 64  SEAIVEAKFNSSGI-YVPELSKTVFHCCFGNEQGQNCSALTDNTEGKTLASVVKASVFRQ 122

Query: 444 PCPLGFVGPLRSWITFSLPLFFCTWKPI 527
              LG    +  W+   L LF C  +P+
Sbjct: 123 ---LGVNWDIECWMKGDLTLFICHMEPL 147



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>SC5A7_DROME (Q9VE46) High-affinity choline transporter 1|
          Length = 614

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +2

Query: 17  PKVKRXNYDEPSKRNLFFPWMVNIWYLNGVTCISTSWFYK 136
           P +K   YDE +K  +F P+      L+ VT IS SW+ K
Sbjct: 447 PLIKYPGYDEETKEQMF-PFRTMAMLLSLVTLISVSWWTK 485



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>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1|
          Length = 887

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 351 LYREQSPHDLFSSTT*RDSLISNTSAEINNDP 446
           +Y E+ P D F+     D LI+NTSA+   +P
Sbjct: 597 IYLERGPKDCFTKPAEADDLINNTSAKEEENP 628



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>GTHB2_CLUPA (Q9YGH2) Gonadotropin beta-2 subunit precursor (Gonadotropin|
           beta-II chain) (GTH-II-beta)
          Length = 149

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -3

Query: 397 YVVELKRSCGDCSLYRQLCATLSDDLGICKSQQLXKKDSMRQELYRY 257
           Y V L   C  CS+    C   S +   C SQ+L   +S +  LY Y
Sbjct: 103 YPVALSCECSLCSMDTSDCTIESVEPDFCMSQRLPVYESQKPSLYDY 149


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,507,618
Number of Sequences: 219361
Number of extensions: 1812108
Number of successful extensions: 4445
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4443
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5424720305
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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