ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags38c11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_506498.1| PREDICTED Oryza sativa (japonica cultivar-group... 327 2e-86
2dbj|AK107137.1| Oryza sativa (japonica cultivar-group) cDNA clon... 327 2e-86
3ref|XM_479261.1| Oryza sativa (japonica cultivar-group), mRNA 313 4e-82
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 121 3e-24
5dbj|AP003749.3| Oryza sativa (japonica cultivar-group) genomic D... 121 3e-24
6gb|AY110954.1| Zea mays CL25517_1 mRNA sequence 94 6e-16
7emb|BX601644.6| Zebrafish DNA sequence from clone DKEY-21O13 in ... 42 2.1
8gb|AC095349.10| Homo sapiens 3 BAC RP11-714D16 (Roswell Park Can... 42 2.1
9gb|AC116375.11| Mus musculus chromosome 5, clone RP24-197K18, co... 40 8.3
10ref|XM_508420.1| PREDICTED: Pan troglodytes similar to mKIAA0197... 40 8.3
11gb|AF064857.1| Homo sapiens BAC derived from chromosome 21q22.3,... 40 8.3
12gb|AC154431.2| Mus musculus BAC clone RP23-174B22 from chromosom... 40 8.3
13gb|AC140314.2| Mus musculus BAC clone RP23-395L3 from chromosome... 40 8.3
14ref|NM_015231.1| Homo sapiens nucleoporin 160kDa (NUP160), mRNA 40 8.3
15gb|AC138667.8| Mus musculus chromosome 14, clone RP24-122H16, co... 40 8.3
16gb|AC147680.4| Canis Familiaris, clone XX-10H12, complete sequence 40 8.3
17gb|AC164405.4| Mus musculus chromosome 3, clone RP24-286C1, comp... 40 8.3
18ref|XM_540738.2| PREDICTED: Canis familiaris similar to nucleopo... 40 8.3
19gb|AC102819.5| Mus musculus chromosome 8, clone RP23-117H21, com... 40 8.3
20emb|CR450737.4| Zebrafish DNA sequence from clone CH211-167D24 i... 40 8.3
21gb|BC008700.1| Homo sapiens nucleoporin 160kDa, mRNA (cDNA clone... 40 8.3
22gb|U61957.3| Caenorhabditis elegans cosmid AC7, complete sequence 40 8.3
23emb|AL163281.2|HS21C081 Homo sapiens chromosome 21 segment HS21C081 40 8.3
24gb|AC115943.8| Mus musculus chromosome 3, clone RP24-555H23, com... 40 8.3
25ref|XM_777458.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 8.3
26gb|AC157934.3| Mus musculus chromosome 5, clone RP24-224K15, com... 40 8.3
27gb|AC012325.9| Homo sapiens chromosome 16 clone RP11-93H5, compl... 40 8.3
28gb|AC155311.2| Mus musculus BAC clone RP23-407F7 from chromosome... 40 8.3
29gb|AC021443.27| Homo sapiens chromosome 11, clone RP11-692M12, c... 40 8.3
30gb|AC132186.3| Homo sapiens chromosome 16 clone CTD-2258A20, com... 40 8.3
31gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 8.3
32gb|AC131160.6| Homo sapiens 3 BAC RP11-449K6 (Roswell Park Cance... 40 8.3
33emb|BX511205.2|RN120J22 Rattus norvegicus chromosome 1 BAC RP32-... 40 8.3
34dbj|BS000162.1| Pan troglodytes chromosome 22 clone:PTB-060F12, ... 40 8.3
35emb|BX640402.2| Chicken DNA sequence from clone WAG-10A12, compl... 40 8.3
36emb|BX647634.1|HSM807780 Homo sapiens mRNA; cDNA DKFZp451B066 (f... 40 8.3
37gb|CP000033.1| Lactobacillus acidophilus NCFM, complete genome 40 8.3
38emb|AL954228.1|CH179K04 Pan troglodytes chromosome 22 BAC CH251-... 40 8.3
39dbj|AP006253.1| Homo sapiens genomic DNA, chromosome 8, clone:RP... 40 8.3
40emb|AL935316.7| Zebrafish DNA sequence from clone CH211-239C9 in... 40 8.3
41gb|AC153833.5| Mus musculus 6 BAC RP23-308F24 (Roswell Park Canc... 40 8.3
42emb|AL807234.6| Mouse DNA sequence from clone RP23-293E12 on chr... 40 8.3
43emb|AL832813.1|HSM804124 Homo sapiens mRNA; cDNA DKFZp667B1624 (... 40 8.3
44emb|AL832029.1|HSM803336 Homo sapiens mRNA; cDNA DKFZp451O194 (f... 40 8.3
45gb|AC124074.2| Homo sapiens chromosome 8, clone RP11-781O9, comp... 40 8.3
46dbj|D83781.1| Homo sapiens Nup160 gene for nuclear pore protein,... 40 8.3 
>ref|XM_506498.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1136_D11.123 mRNA
          Length = 1778

 Score =  327 bits (165), Expect = 2e-86
 Identities = 316/367 (86%)
 Strand = Plus / Minus

                                                                        
Query: 235  ccttttatcaaaagctactattatatcgataaagctcttgtctcatggagtccttcttca 294
            ||||||||||||||||||| ||||||||| |||| ||||||||||| || || |||||||
Sbjct: 1477 ccttttatcaaaagctactgttatatcgacaaaggtcttgtctcatagaatctttcttca 1418

                                                                        
Query: 295  naagttgctggcttttgcatattcccaagtcgtctgagagcgttgcacacagctgtctgt 354
             ||| || || ||||||||||| |||||||| || || || |  ||||| ||||||||||
Sbjct: 1417 aaagctgttgccttttgcatatgcccaagtcttcagaaagtgacgcacatagctgtctgt 1358

                                                                        
Query: 355  atagggaacagtctccacatgacctttttagctcaacaacataaagagattcattgatct 414
            | |||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1357 aaagggaacaatccccagatgacctttttagctcaacaacataaagagattcattgatct 1298

                                                                        
Query: 415  caaacacctcagcagagattaataatgatccatgccctcttggatttgttggtcccttgc 474
            |||||||||||||||| || |||||   |||||| ||||||||||||| |||| | || |
Sbjct: 1297 caaacacctcagcagaaatcaataaatttccatgtcctcttggatttgctggttctttac 1238

                                                                        
Query: 475  gctcttggatcacttttagcttgccgttgttcttctgtacttggaagcccatatttatga 534
               ||||||||||||||||||||||  ||||||||||||| ||||| ||| | | | |||
Sbjct: 1237 aaacttggatcacttttagcttgccactgttcttctgtacctggaaacccttttctgtga 1178

                                                                        
Query: 535  cattgctctctatcttctcaaatagataantagggggatagtttgatgcaaatctgattt 594
            || ||||||| ||||||||||||||| || |||||| ||| |||||| ||||||||||||
Sbjct: 1177 cagtgctctcaatcttctcaaatagagaagtaggggaataatttgatacaaatctgattt 1118

                   
Query: 595  ttctttc 601
            | |||||
Sbjct: 1117 tcctttc 1111
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>dbj|AK107137.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-C11, full
            insert sequence
          Length = 1777

 Score =  327 bits (165), Expect = 2e-86
 Identities = 316/367 (86%)
 Strand = Plus / Minus

                                                                        
Query: 235  ccttttatcaaaagctactattatatcgataaagctcttgtctcatggagtccttcttca 294
            ||||||||||||||||||| ||||||||| |||| ||||||||||| || || |||||||
Sbjct: 1476 ccttttatcaaaagctactgttatatcgacaaaggtcttgtctcatagaatctttcttca 1417

                                                                        
Query: 295  naagttgctggcttttgcatattcccaagtcgtctgagagcgttgcacacagctgtctgt 354
             ||| || || ||||||||||| |||||||| || || || |  ||||| ||||||||||
Sbjct: 1416 aaagctgttgccttttgcatatgcccaagtcttcagaaagtgacgcacatagctgtctgt 1357

                                                                        
Query: 355  atagggaacagtctccacatgacctttttagctcaacaacataaagagattcattgatct 414
            | |||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1356 aaagggaacaatccccagatgacctttttagctcaacaacataaagagattcattgatct 1297

                                                                        
Query: 415  caaacacctcagcagagattaataatgatccatgccctcttggatttgttggtcccttgc 474
            |||||||||||||||| || |||||   |||||| ||||||||||||| |||| | || |
Sbjct: 1296 caaacacctcagcagaaatcaataaatttccatgtcctcttggatttgctggttctttac 1237

                                                                        
Query: 475  gctcttggatcacttttagcttgccgttgttcttctgtacttggaagcccatatttatga 534
               ||||||||||||||||||||||  ||||||||||||| ||||| ||| | | | |||
Sbjct: 1236 aaacttggatcacttttagcttgccactgttcttctgtacctggaaacccttttctgtga 1177

                                                                        
Query: 535  cattgctctctatcttctcaaatagataantagggggatagtttgatgcaaatctgattt 594
            || ||||||| ||||||||||||||| || |||||| ||| |||||| ||||||||||||
Sbjct: 1176 cagtgctctcaatcttctcaaatagagaagtaggggaataatttgatacaaatctgattt 1117

                   
Query: 595  ttctttc 601
            | |||||
Sbjct: 1116 tcctttc 1110
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>ref|XM_479261.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1341

 Score =  313 bits (158), Expect = 4e-82
 Identities = 309/360 (85%)
 Strand = Plus / Minus

                                                                        
Query: 242  tcaaaagctactattatatcgataaagctcttgtctcatggagtccttcttcanaagttg 301
            |||||||||||| ||||||||| |||| ||||||||||| || || ||||||| ||| ||
Sbjct: 1341 tcaaaagctactgttatatcgacaaaggtcttgtctcatagaatctttcttcaaaagctg 1282

                                                                        
Query: 302  ctggcttttgcatattcccaagtcgtctgagagcgttgcacacagctgtctgtataggga 361
             || ||||||||||| |||||||| || || || |  ||||| ||||||||||| |||||
Sbjct: 1281 ttgccttttgcatatgcccaagtcttcagaaagtgacgcacatagctgtctgtaaaggga 1222

                                                                        
Query: 362  acagtctccacatgacctttttagctcaacaacataaagagattcattgatctcaaacac 421
            ||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1221 acaatccccagatgacctttttagctcaacaacataaagagattcattgatctcaaacac 1162

                                                                        
Query: 422  ctcagcagagattaataatgatccatgccctcttggatttgttggtcccttgcgctcttg 481
            ||||||||| || |||||   |||||| ||||||||||||| |||| | || |   ||||
Sbjct: 1161 ctcagcagaaatcaataaatttccatgtcctcttggatttgctggttctttacaaacttg 1102

                                                                        
Query: 482  gatcacttttagcttgccgttgttcttctgtacttggaagcccatatttatgacattgct 541
            ||||||||||||||||||  ||||||||||||| ||||| ||| | | | ||||| ||||
Sbjct: 1101 gatcacttttagcttgccactgttcttctgtacctggaaacccttttctgtgacagtgct 1042

                                                                        
Query: 542  ctctatcttctcaaatagataantagggggatagtttgatgcaaatctgatttttctttc 601
            ||| ||||||||||||||| || |||||| ||| |||||| ||||||||||||| |||||
Sbjct: 1041 ctcaatcttctcaaatagagaagtaggggaataatttgatacaaatctgattttcctttc 982
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  121 bits (61), Expect = 3e-24
 Identities = 73/77 (94%)
 Strand = Plus / Minus

                                                                            
Query: 347      ctgtctgtatagggaacagtctccacatgacctttttagctcaacaacataaagagattc 406
                ||||||||| |||||||| || ||| ||||||||||||||||||||||||||||||||||
Sbjct: 26414719 ctgtctgtaaagggaacaatccccagatgacctttttagctcaacaacataaagagattc 26414660

                                 
Query: 407      attgatctcaaacacct 423
                |||||||||||||||||
Sbjct: 26414659 attgatctcaaacacct 26414643



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 80/91 (87%)
 Strand = Plus / Minus

                                                                            
Query: 235      ccttttatcaaaagctactattatatcgataaagctcttgtctcatggagtccttcttca 294
                ||||||||||||||||||| ||||||||| |||| ||||||||||| || || |||||||
Sbjct: 26414977 ccttttatcaaaagctactgttatatcgacaaaggtcttgtctcatagaatctttcttca 26414918

                                               
Query: 295      naagttgctggcttttgcatattcccaagtc 325
                 ||| || || ||||||||||| ||||||||
Sbjct: 26414917 aaagctgttgccttttgcatatgcccaagtc 26414887



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 86/100 (86%)
 Strand = Plus / Minus

                                                                            
Query: 502      tgttcttctgtacttggaagcccatatttatgacattgctctctatcttctcaaatagat 561
                ||||||||||||| ||||| ||| | | | ||||| ||||||| ||||||||||||||| 
Sbjct: 26414348 tgttcttctgtacctggaaacccttttctgtgacagtgctctcaatcttctcaaatagag 26414289

                                                        
Query: 562      aantagggggatagtttgatgcaaatctgatttttctttc 601
                || |||||| ||| |||||| ||||||||||||| |||||
Sbjct: 26414288 aagtaggggaataatttgatacaaatctgattttcctttc 26414249



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 63/76 (82%)
 Strand = Plus / Minus

                                                                            
Query: 420      acctcagcagagattaataatgatccatgccctcttggatttgttggtcccttgcgctct 479
                ||||||||||| || |||||   |||||| ||||||||||||| |||| | || |   ||
Sbjct: 26414533 acctcagcagaaatcaataaatttccatgtcctcttggatttgctggttctttacaaact 26414474

                                
Query: 480      tggatcacttttagct 495
                ||||||||||||||||
Sbjct: 26414473 tggatcacttttagct 26414458
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>dbj|AP003749.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1136_D11
          Length = 109399

 Score =  121 bits (61), Expect = 3e-24
 Identities = 73/77 (94%)
 Strand = Plus / Minus

                                                                         
Query: 347   ctgtctgtatagggaacagtctccacatgacctttttagctcaacaacataaagagattc 406
             ||||||||| |||||||| || ||| ||||||||||||||||||||||||||||||||||
Sbjct: 68959 ctgtctgtaaagggaacaatccccagatgacctttttagctcaacaacataaagagattc 68900

                              
Query: 407   attgatctcaaacacct 423
             |||||||||||||||||
Sbjct: 68899 attgatctcaaacacct 68883



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 80/91 (87%)
 Strand = Plus / Minus

                                                                         
Query: 235   ccttttatcaaaagctactattatatcgataaagctcttgtctcatggagtccttcttca 294
             ||||||||||||||||||| ||||||||| |||| ||||||||||| || || |||||||
Sbjct: 69217 ccttttatcaaaagctactgttatatcgacaaaggtcttgtctcatagaatctttcttca 69158

                                            
Query: 295   naagttgctggcttttgcatattcccaagtc 325
              ||| || || ||||||||||| ||||||||
Sbjct: 69157 aaagctgttgccttttgcatatgcccaagtc 69127



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 86/100 (86%)
 Strand = Plus / Minus

                                                                         
Query: 502   tgttcttctgtacttggaagcccatatttatgacattgctctctatcttctcaaatagat 561
             ||||||||||||| ||||| ||| | | | ||||| ||||||| ||||||||||||||| 
Sbjct: 68588 tgttcttctgtacctggaaacccttttctgtgacagtgctctcaatcttctcaaatagag 68529

                                                     
Query: 562   aantagggggatagtttgatgcaaatctgatttttctttc 601
             || |||||| ||| |||||| ||||||||||||| |||||
Sbjct: 68528 aagtaggggaataatttgatacaaatctgattttcctttc 68489



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 63/76 (82%)
 Strand = Plus / Minus

                                                                         
Query: 420   acctcagcagagattaataatgatccatgccctcttggatttgttggtcccttgcgctct 479
             ||||||||||| || |||||   |||||| ||||||||||||| |||| | || |   ||
Sbjct: 68773 acctcagcagaaatcaataaatttccatgtcctcttggatttgctggttctttacaaact 68714

                             
Query: 480   tggatcacttttagct 495
             ||||||||||||||||
Sbjct: 68713 tggatcacttttagct 68698
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>gb|AY110954.1| Zea mays CL25517_1 mRNA sequence
          Length = 762

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 104/125 (83%)
 Strand = Plus / Plus

                                                                       
Query: 299 ttgctggcttttgcatattcccaagtcgtctgagagcgttgcacacagctgtctgtatag 358
           |||||||||||||||| | |||||||| || ||||||||  |||||| || |||||| ||
Sbjct: 271 ttgctggcttttgcatgtgcccaagtcctccgagagcgtctcacacaactttctgtacag 330

                                                                       
Query: 359 ggaacagtctccacatgacctttttagctcaacaacataaagagattcattgatctcaaa 418
           ||| ||||||||| |||||      ||||| ||||| ||||| |||||||| ||||||||
Sbjct: 331 ggagcagtctccagatgacnnnnnnagctcgacaacgtaaagggattcattaatctcaaa 390

                
Query: 419 cacct 423
           |||||
Sbjct: 391 cacct 395



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 86/108 (79%)
 Strand = Plus / Plus

                                                                       
Query: 494 cttgccgttgttcttctgtacttggaagcccatatttatgacattgctctctatcttctc 553
           |||||||||| |||| ||||| ||||| ||||      ||||| ||||||| ||||||||
Sbjct: 394 cttgccgttgctcttgtgtacctggaaacccannnnnctgacaatgctctcgatcttctc 453

                                                           
Query: 554 aaatagataantagggggatagtttgatgcaaatctgatttttctttc 601
           ||| |  |||   |||| ||| |||||||| ||||||||||| |||||
Sbjct: 454 aaacaagtaagctggggaataatttgatgcgaatctgattttcctttc 501
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>emb|BX601644.6| Zebrafish DNA sequence from clone DKEY-21O13 in linkage group 9,
             complete sequence
          Length = 217065

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 234   gccttttatcaaaagctactattat 258
             |||||||||||||||||| ||||||
Sbjct: 34122 gccttttatcaaaagctagtattat 34146
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>gb|AC095349.10| Homo sapiens 3 BAC RP11-714D16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 182618

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 270    tcttgtctcatggagtccttcttca 294
              ||||||||| |||||||||||||||
Sbjct: 107517 tcttgtctcttggagtccttcttca 107493
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>gb|AC116375.11| Mus musculus chromosome 5, clone RP24-197K18, complete sequence
          Length = 150306

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 239   ttatcaaaagctactattat 258
             ||||||||||||||||||||
Sbjct: 40884 ttatcaaaagctactattat 40903
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>ref|XM_508420.1| PREDICTED: Pan troglodytes similar to mKIAA0197 protein (LOC451179),
            mRNA
          Length = 2586

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 266  aagctcttgtctcatggagt 285
            ||||||||||||||||||||
Sbjct: 2137 aagctcttgtctcatggagt 2156
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>gb|AF064857.1| Homo sapiens BAC derived from chromosome 21q22.3, complete sequence,
             containing PEP19 (PCP4) gene
          Length = 199665

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 521   gcccatatttatgacattgc 540
             ||||||||||||||||||||
Sbjct: 90253 gcccatatttatgacattgc 90272
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>gb|AC154431.2| Mus musculus BAC clone RP23-174B22 from chromosome 13, complete sequence
          Length = 195030

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 524    catatttatgacattgctct 543
              ||||||||||||||||||||
Sbjct: 125506 catatttatgacattgctct 125525
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>gb|AC140314.2| Mus musculus BAC clone RP23-395L3 from chromosome 12, complete sequence
          Length = 191322

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 580    atgcaaatctgatttttctttctg 603
              ||||||| ||||||||||||||||
Sbjct: 174722 atgcaaagctgatttttctttctg 174745
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>ref|NM_015231.1| Homo sapiens nucleoporin 160kDa (NUP160), mRNA
          Length = 5383

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 266  aagctcttgtctcatggagt 285
            ||||||||||||||||||||
Sbjct: 4022 aagctcttgtctcatggagt 4041
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>gb|AC138667.8| Mus musculus chromosome 14, clone RP24-122H16, complete sequence
          Length = 177623

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 483    atcacttttagcttgccgtt 502
              ||||||||||||||||||||
Sbjct: 113804 atcacttttagcttgccgtt 113785
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>gb|AC147680.4| Canis Familiaris, clone XX-10H12, complete sequence
          Length = 214979

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 543    tctatcttctcaaatagata 562
              ||||||||||||||||||||
Sbjct: 113662 tctatcttctcaaatagata 113681
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>gb|AC164405.4| Mus musculus chromosome 3, clone RP24-286C1, complete sequence
          Length = 159535

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 580   atgcaaatctgatttttctt 599
             ||||||||||||||||||||
Sbjct: 76524 atgcaaatctgatttttctt 76543
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>ref|XM_540738.2| PREDICTED: Canis familiaris similar to nucleoporin 160kDa
            (LOC483618), mRNA
          Length = 4156

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 266  aagctcttgtctcatggagt 285
            ||||||||||||||||||||
Sbjct: 3718 aagctcttgtctcatggagt 3737
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>gb|AC102819.5| Mus musculus chromosome 8, clone RP23-117H21, complete sequence
          Length = 191116

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 173   cctcttgtcaaaaagggagg 192
             ||||||||||||||||||||
Sbjct: 63077 cctcttgtcaaaaagggagg 63058
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>emb|CR450737.4| Zebrafish DNA sequence from clone CH211-167D24 in linkage group 12,
             complete sequence
          Length = 156532

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 376   acctttttagctcaacaacataaa 399
             |||||||||||| |||||||||||
Sbjct: 91120 acctttttagcttaacaacataaa 91097
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>gb|BC008700.1| Homo sapiens nucleoporin 160kDa, mRNA (cDNA clone IMAGE:2960535),
           partial cds
          Length = 1723

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 266 aagctcttgtctcatggagt 285
           ||||||||||||||||||||
Sbjct: 344 aagctcttgtctcatggagt 363
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>gb|U61957.3| Caenorhabditis elegans cosmid AC7, complete sequence
          Length = 34728

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 366  tctccacatgacctttttag 385
            ||||||||||||||||||||
Sbjct: 5158 tctccacatgacctttttag 5177
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>emb|AL163281.2|HS21C081 Homo sapiens chromosome 21 segment HS21C081
          Length = 340000

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 521   gcccatatttatgacattgc 540
             ||||||||||||||||||||
Sbjct: 37954 gcccatatttatgacattgc 37973
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>gb|AC115943.8| Mus musculus chromosome 3, clone RP24-555H23, complete sequence
          Length = 138723

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 580   atgcaaatctgatttttctt 599
             ||||||||||||||||||||
Sbjct: 31875 atgcaaatctgatttttctt 31894
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>ref|XM_777458.1| PREDICTED: Strongylocentrotus purpuratus similar to CG14551-PA
           (LOC577213), partial mRNA
          Length = 734

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 583 caaatctgatttttctttct 602
           ||||||||||||||||||||
Sbjct: 678 caaatctgatttttctttct 659
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>gb|AC157934.3| Mus musculus chromosome 5, clone RP24-224K15, complete sequence
          Length = 160733

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 239    ttatcaaaagctactattat 258
              ||||||||||||||||||||
Sbjct: 111468 ttatcaaaagctactattat 111487
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>gb|AC012325.9| Homo sapiens chromosome 16 clone RP11-93H5, complete sequence
          Length = 204524

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 582    gcaaatctgatttttctttc 601
              ||||||||||||||||||||
Sbjct: 158369 gcaaatctgatttttctttc 158388
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>gb|AC155311.2| Mus musculus BAC clone RP23-407F7 from chromosome 12, complete sequence
          Length = 166104

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 580    atgcaaatctgatttttctttctg 603
              ||||||| ||||||||||||||||
Sbjct: 129910 atgcaaagctgatttttctttctg 129887
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>gb|AC021443.27| Homo sapiens chromosome 11, clone RP11-692M12, complete sequence
          Length = 220283

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 266    aagctcttgtctcatggagt 285
              ||||||||||||||||||||
Sbjct: 137462 aagctcttgtctcatggagt 137443
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>gb|AC132186.3| Homo sapiens chromosome 16 clone CTD-2258A20, complete sequence
          Length = 157833

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 582   gcaaatctgatttttctttc 601
             ||||||||||||||||||||
Sbjct: 67680 gcaaatctgatttttctttc 67699
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 492     agcttgccgttgttcttctg 511
               ||||||||||||||||||||
Sbjct: 1997720 agcttgccgttgttcttctg 1997701
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>gb|AC131160.6| Homo sapiens 3 BAC RP11-449K6 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 70958

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 124  ttggttttacaaaaatgtga 143
            ||||||||||||||||||||
Sbjct: 7953 ttggttttacaaaaatgtga 7934
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>emb|BX511205.2|RN120J22 Rattus norvegicus chromosome 1 BAC RP32-120J22, complete sequence
          Length = 160764

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 576   tttgatgcaaatctgatttt 595
             ||||||||||||||||||||
Sbjct: 84509 tttgatgcaaatctgatttt 84490
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>dbj|BS000162.1| Pan troglodytes chromosome 22 clone:PTB-060F12, map 22, complete
              sequences
          Length = 156288

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 521    gcccatatttatgacattgc 540
              ||||||||||||||||||||
Sbjct: 102894 gcccatatttatgacattgc 102913
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>emb|BX640402.2| Chicken DNA sequence from clone WAG-10A12, complete sequence
          Length = 131863

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 272   ttgtctcatggagtccttct 291
             ||||||||||||||||||||
Sbjct: 47669 ttgtctcatggagtccttct 47650
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>emb|BX647634.1|HSM807780 Homo sapiens mRNA; cDNA DKFZp451B066 (from clone DKFZp451B066)
          Length = 5273

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 266  aagctcttgtctcatggagt 285
            ||||||||||||||||||||
Sbjct: 3861 aagctcttgtctcatggagt 3880
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>gb|CP000033.1| Lactobacillus acidophilus NCFM, complete genome
          Length = 1993564

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 580     atgcaaatctgatttttctt 599
               ||||||||||||||||||||
Sbjct: 1747550 atgcaaatctgatttttctt 1747569
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>emb|AL954228.1|CH179K04 Pan troglodytes chromosome 22 BAC CH251-179K04, complete sequence
          Length = 182532

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 521    gcccatatttatgacattgc 540
              ||||||||||||||||||||
Sbjct: 120825 gcccatatttatgacattgc 120844
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>dbj|AP006253.1| Homo sapiens genomic DNA, chromosome 8, clone:RP11-85A6, complete
              sequence
          Length = 130487

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 113    atatctacaagttggttttacaaaaatg 140
              ||||||| |||||||||||| |||||||
Sbjct: 118244 atatctataagttggttttataaaaatg 118217
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>emb|AL935316.7| Zebrafish DNA sequence from clone CH211-239C9 in linkage group 3,
              complete sequence
          Length = 174887

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 128    ttttacaaaaatgtgacata 147
              ||||||||||||||||||||
Sbjct: 151474 ttttacaaaaatgtgacata 151455
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>gb|AC153833.5| Mus musculus 6 BAC RP23-308F24 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 170164

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 125    tggttttacaaaaatgtgac 144
              ||||||||||||||||||||
Sbjct: 150573 tggttttacaaaaatgtgac 150592
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>emb|AL807234.6| Mouse DNA sequence from clone RP23-293E12 on chromosome 4, complete
              sequence
          Length = 226546

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 237    ttttatcaaaagctactatt 256
              ||||||||||||||||||||
Sbjct: 147518 ttttatcaaaagctactatt 147537
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>emb|AL832813.1|HSM804124 Homo sapiens mRNA; cDNA DKFZp667B1624 (from clone DKFZp667B1624)
          Length = 1529

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 266 aagctcttgtctcatggagt 285
           ||||||||||||||||||||
Sbjct: 163 aagctcttgtctcatggagt 182
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>emb|AL832029.1|HSM803336 Homo sapiens mRNA; cDNA DKFZp451O194 (from clone DKFZp451O194)
          Length = 5226

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 266  aagctcttgtctcatggagt 285
            ||||||||||||||||||||
Sbjct: 3851 aagctcttgtctcatggagt 3870
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>gb|AC124074.2| Homo sapiens chromosome 8, clone RP11-781O9, complete sequence
          Length = 180673

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 113    atatctacaagttggttttacaaaaatg 140
              ||||||| |||||||||||| |||||||
Sbjct: 118602 atatctataagttggttttataaaaatg 118629
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>dbj|D83781.1| Homo sapiens Nup160 gene for nuclear pore protein, partial cds
          Length = 4814

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 266  aagctcttgtctcatggagt 285
            ||||||||||||||||||||
Sbjct: 3830 aagctcttgtctcatggagt 3849


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,837,761
Number of Sequences: 3902068
Number of extensions: 5837761
Number of successful extensions: 111385
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 111238
Number of HSP's gapped (non-prelim): 141
length of query: 609
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 586
effective length of database: 17,143,297,704
effective search space: 10045972454544
effective search space used: 10045972454544
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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