ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags38c07 |
|---|---|
| Clone Library Name | barley_pub |
>CESA5_ARATH (Q8L778) Cellulose synthase A catalytic subunit 5 [UDP-forming] (EC| 2.4.1.12) (AtCesA-5) Length = 1069 Score = 116 bits (291), Expect(2) = 6e-33 Identities = 50/78 (64%), Positives = 66/78 (84%) Frame = -3 Query: 531 GYQSWGPLFGKLFFSIWVILHLYPFLKGLMGKQNRTPTIVIVWSILLASIFSLLWVKIDP 352 GY SWGPLFG+LFF+ WVILHLYPFLKGL+GKQ+R PTI++VWSILLASI +LLWV+++P Sbjct: 993 GYDSWGPLFGRLFFAFWVILHLYPFLKGLLGKQDRMPTIILVWSILLASILTLLWVRVNP 1052 Query: 351 FISDTQKAVAMGQCGVNC 298 F++ + + CG++C Sbjct: 1053 FVAKGGPILEI--CGLDC 1068 Score = 43.9 bits (102), Expect(2) = 6e-33 Identities = 19/33 (57%), Positives = 27/33 (81%) Frame = -2 Query: 610 LLIPPTTVLVINLVGMVAGISYAINSGLPILGP 512 LLIPPTT+L+IN++G++ GIS AI++G GP Sbjct: 967 LLIPPTTLLIINVIGVIVGISDAISNGYDSWGP 999
>CESA7_ARATH (Q9SWW6) Cellulose synthase A catalytic subunit 7 [UDP-forming] (EC| 2.4.1.12) (AtCesA-7) (Irregular xylem protein 3) (AtIRX3) Length = 1026 Score = 135 bits (341), Expect = 7e-32 Identities = 60/78 (76%), Positives = 69/78 (88%) Frame = -3 Query: 531 GYQSWGPLFGKLFFSIWVILHLYPFLKGLMGKQNRTPTIVIVWSILLASIFSLLWVKIDP 352 GYQSWGPLFGKLFFS WVI+HLYPFLKGLMG+QNRTPTIV++WS+LLASIFSLLWV+IDP Sbjct: 950 GYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDP 1009 Query: 351 FISDTQKAVAMGQCGVNC 298 F+ T K +CG+NC Sbjct: 1010 FVLKT-KGPDTSKCGINC 1026 Score = 50.4 bits (119), Expect = 4e-06 Identities = 25/37 (67%), Positives = 29/37 (78%) Frame = -2 Query: 610 LLIPPTTVLVINLVGMVAGISYAINSGLPILGPALWK 500 LLIPPTTVL+IN+VG+VAGIS AIN+G GP K Sbjct: 924 LLIPPTTVLIINIVGVVAGISDAINNGYQSWGPLFGK 960
>CESA3_ARATH (Q941L0) Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC| 2.4.1.12) (AtCesA-3) (Constitutive expression of VSP1 protein 1) (Isoxaben resistant protein 1) (Ath-B) Length = 1065 Score = 132 bits (331), Expect = 1e-30 Identities = 59/79 (74%), Positives = 69/79 (87%) Frame = -3 Query: 534 AGYQSWGPLFGKLFFSIWVILHLYPFLKGLMGKQNRTPTIVIVWSILLASIFSLLWVKID 355 +GYQSWGPLFGKLFF+ WVI+HLYPFLKGLMG+QNRTPTIV+VWS+LLASIFSLLWV+ID Sbjct: 988 SGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSVLLASIFSLLWVRID 1047 Query: 354 PFISDTQKAVAMGQCGVNC 298 PF S + +CG+NC Sbjct: 1048 PFTSRVTGPDIL-ECGINC 1065 Score = 54.3 bits (129), Expect = 3e-07 Identities = 25/37 (67%), Positives = 30/37 (81%) Frame = -2 Query: 610 LLIPPTTVLVINLVGMVAGISYAINSGLPILGPALWK 500 LLIPPTT+L++NLVG+VAG+SYAINSG GP K Sbjct: 963 LLIPPTTLLIVNLVGVVAGVSYAINSGYQSWGPLFGK 999
>CESA4_ARATH (Q84JA6) Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC| 2.4.1.12) (AtCesA-4) (Irregular xylem protein 5) (AtIRX5) Length = 1049 Score = 129 bits (323), Expect = 9e-30 Identities = 58/78 (74%), Positives = 68/78 (87%) Frame = -3 Query: 531 GYQSWGPLFGKLFFSIWVILHLYPFLKGLMGKQNRTPTIVIVWSILLASIFSLLWVKIDP 352 GY SWGPLFGKLFF+ WVI+HLYPFLKGLMG+QNRTPTIV++WSILLASIFSL+WV+IDP Sbjct: 973 GYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSILLASIFSLVWVRIDP 1032 Query: 351 FISDTQKAVAMGQCGVNC 298 F+ Q + QCGV+C Sbjct: 1033 FL-PKQTGPLLKQCGVDC 1049 Score = 47.0 bits (110), Expect = 4e-05 Identities = 21/37 (56%), Positives = 29/37 (78%) Frame = -2 Query: 610 LLIPPTTVLVINLVGMVAGISYAINSGLPILGPALWK 500 LLIPPTT++++N+VG+VAG+S AIN+G GP K Sbjct: 947 LLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGK 983
>CESA1_ARATH (O48946) Cellulose synthase A catalytic subunit 1 [UDP-forming] (EC| 2.4.1.12) (AtCesA-1) (Radially swollen protein 1) (AtRSW1) Length = 1081 Score = 124 bits (310), Expect = 3e-28 Identities = 54/69 (78%), Positives = 63/69 (91%) Frame = -3 Query: 534 AGYQSWGPLFGKLFFSIWVILHLYPFLKGLMGKQNRTPTIVIVWSILLASIFSLLWVKID 355 +GYQSWGPLFGKLFF++WVI HLYPFLKGL+G+QNRTPTIVIVWS+LLASIFSLLWV+I+ Sbjct: 1003 SGYQSWGPLFGKLFFALWVIAHLYPFLKGLLGRQNRTPTIVIVWSVLLASIFSLLWVRIN 1062 Query: 354 PFISDTQKA 328 PF+ A Sbjct: 1063 PFVDANPNA 1071 Score = 53.9 bits (128), Expect = 4e-07 Identities = 24/37 (64%), Positives = 30/37 (81%) Frame = -2 Query: 610 LLIPPTTVLVINLVGMVAGISYAINSGLPILGPALWK 500 LLIPPTTVL++NL+G+VAG+SYA+NSG GP K Sbjct: 978 LLIPPTTVLLVNLIGIVAGVSYAVNSGYQSWGPLFGK 1014
>CESA8_ARATH (Q8LPK5) Cellulose synthase A catalytic subunit 8 [UDP-forming] (EC| 2.4.1.12) (AtCesA-8) (Irregular xylem protein 1) (AtIRX1) Length = 985 Score = 122 bits (307), Expect = 6e-28 Identities = 52/65 (80%), Positives = 63/65 (96%) Frame = -3 Query: 531 GYQSWGPLFGKLFFSIWVILHLYPFLKGLMGKQNRTPTIVIVWSILLASIFSLLWVKIDP 352 GY++WGPLFGK+FF+ WVILHLYPFLKGLMG+QNRTPTIVI+WSILLAS+FSL+WV+I+P Sbjct: 907 GYEAWGPLFGKVFFAFWVILHLYPFLKGLMGRQNRTPTIVILWSILLASVFSLVWVRINP 966 Query: 351 FISDT 337 F+S T Sbjct: 967 FVSKT 971 Score = 46.2 bits (108), Expect = 7e-05 Identities = 22/37 (59%), Positives = 27/37 (72%) Frame = -2 Query: 610 LLIPPTTVLVINLVGMVAGISYAINSGLPILGPALWK 500 LLIPPT++L+INLVG+VAG S A+N G GP K Sbjct: 881 LLIPPTSLLIINLVGVVAGFSDALNKGYEAWGPLFGK 917
>CESAA_ARATH (Q9SKJ5) Probable cellulose synthase A catalytic subunit 10| [UDP-forming] (EC 2.4.1.12) (AtCesA-10) (AtCesA-13) Length = 1065 Score = 119 bits (298), Expect = 7e-27 Identities = 52/66 (78%), Positives = 60/66 (90%) Frame = -3 Query: 534 AGYQSWGPLFGKLFFSIWVILHLYPFLKGLMGKQNRTPTIVIVWSILLASIFSLLWVKID 355 +GYQSWGPL GKL F+ WV+ HLYPFLKGL+G+QNRTPTIVIVWS LLASIFSLLWV+I+ Sbjct: 990 SGYQSWGPLMGKLLFAFWVVAHLYPFLKGLLGRQNRTPTIVIVWSALLASIFSLLWVRIN 1049 Query: 354 PFISDT 337 PF+S T Sbjct: 1050 PFVSTT 1055 Score = 56.2 bits (134), Expect = 7e-08 Identities = 26/39 (66%), Positives = 32/39 (82%) Frame = -2 Query: 610 LLIPPTTVLVINLVGMVAGISYAINSGLPILGPALWKAL 494 LLIPPTT+L++NLVG+VAG+SYAINSG GP + K L Sbjct: 965 LLIPPTTILLVNLVGIVAGVSYAINSGYQSWGPLMGKLL 1003
>CESA9_ARATH (Q9SJ22) Probable cellulose synthase A catalytic subunit 9| [UDP-forming] (EC 2.4.1.12) (AtCesA-9) Length = 1088 Score = 118 bits (296), Expect = 1e-26 Identities = 50/78 (64%), Positives = 67/78 (85%) Frame = -3 Query: 531 GYQSWGPLFGKLFFSIWVILHLYPFLKGLMGKQNRTPTIVIVWSILLASIFSLLWVKIDP 352 GY SWGPLFG+LFF++WVI+HLYPFLKGL+GKQ+R PTI++VWSILLASI +LLWV+++P Sbjct: 1011 GYDSWGPLFGRLFFALWVIVHLYPFLKGLLGKQDRVPTIILVWSILLASILTLLWVRVNP 1070 Query: 351 FISDTQKAVAMGQCGVNC 298 F+S + + CG++C Sbjct: 1071 FVSKDGPVLEI--CGLDC 1086 Score = 46.6 bits (109), Expect = 6e-05 Identities = 23/43 (53%), Positives = 30/43 (69%), Gaps = 7/43 (16%) Frame = -2 Query: 610 LLIPPTTVLVINLVGMVAGISYAINSGLPILGP-------ALW 503 LLIPPTT+L+IN+VG++ G+S AIN+G GP ALW Sbjct: 985 LLIPPTTLLIINIVGVIVGVSDAINNGYDSWGPLFGRLFFALW 1027
>CESA6_ARATH (Q94JQ6) Cellulose synthase A catalytic subunit 6 [UDP-forming] (EC| 2.4.1.12) (AtCesA-6) (Isoxaben resistant protein 2) (Protein PROCUSTE1) (Protein Quill) (AraxCelA) Length = 1084 Score = 117 bits (292), Expect = 3e-26 Identities = 49/78 (62%), Positives = 67/78 (85%) Frame = -3 Query: 531 GYQSWGPLFGKLFFSIWVILHLYPFLKGLMGKQNRTPTIVIVWSILLASIFSLLWVKIDP 352 GY SWGPLFG+LFF++WVI+HLYPFLKGL+GKQ+R PTI++VWSILLASI +LLWV+++P Sbjct: 1008 GYDSWGPLFGRLFFALWVIIHLYPFLKGLLGKQDRMPTIIVVWSILLASILTLLWVRVNP 1067 Query: 351 FISDTQKAVAMGQCGVNC 298 F++ + + CG++C Sbjct: 1068 FVAKGGPILEI--CGLDC 1083 Score = 41.6 bits (96), Expect = 0.002 Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 7/43 (16%) Frame = -2 Query: 610 LLIPPTTVLVINLVGMVAGISYAINSGLPILGP-------ALW 503 LLIPP T+L+IN++G++ G+S AI++G GP ALW Sbjct: 982 LLIPPMTLLIINVIGVIVGVSDAISNGYDSWGPLFGRLFFALW 1024
>CESA2_ARATH (O48947) Cellulose synthase A catalytic subunit 2 [UDP-forming] (EC| 2.4.1.12) (AtCesA-2) (Ath-A) Length = 1084 Score = 117 bits (292), Expect = 3e-26 Identities = 48/78 (61%), Positives = 67/78 (85%) Frame = -3 Query: 531 GYQSWGPLFGKLFFSIWVILHLYPFLKGLMGKQNRTPTIVIVWSILLASIFSLLWVKIDP 352 GY SWGPLFG+LFF++WVI+HLYPFLKG++GKQ++ PTI++VWSILLASI +LLWV+++P Sbjct: 1007 GYDSWGPLFGRLFFALWVIVHLYPFLKGMLGKQDKMPTIIVVWSILLASILTLLWVRVNP 1066 Query: 351 FISDTQKAVAMGQCGVNC 298 F++ + + CG+NC Sbjct: 1067 FVAKGGPVLEI--CGLNC 1082 Score = 44.3 bits (103), Expect = 3e-04 Identities = 21/43 (48%), Positives = 30/43 (69%), Gaps = 7/43 (16%) Frame = -2 Query: 610 LLIPPTTVLVINLVGMVAGISYAINSGLPILGP-------ALW 503 LLIPPTT+L+IN++G++ G+S AI++G GP ALW Sbjct: 981 LLIPPTTLLIINIIGVIVGVSDAISNGYDSWGPLFGRLFFALW 1023
>P85B_HUMAN (O00459) Phosphatidylinositol 3-kinase regulatory beta subunit| (PI3-kinase p85-beta subunit) (PtdIns-3-kinase p85-beta) Length = 728 Score = 31.6 bits (70), Expect = 1.9 Identities = 32/106 (30%), Positives = 43/106 (40%), Gaps = 21/106 (19%) Frame = -2 Query: 607 LIPPTTVL--------VINLVGMVAGISYAINSGLPILGPALWKALLLNLGDPPSLPLPQ 452 L PPT L ++ +G VA + A+ + LG A + LLL PPS P P Sbjct: 209 LEPPTLPLHRALTLRFLLQHLGRVARRAPALGPAVRALG-ATFGPLLLRAPPPPSSPPPG 267 Query: 451 GSHGEAEPHADHRHRLVD-------------PPRLHLLPPLGEDRP 353 G+ +EP D LV+ PP L PP + P Sbjct: 268 GAPDGSEPSPDFPALLVEKLLQEHLEEQEVAPPALPPKPPKAKPAP 313
>RGA1_BRACM (Q5BN23) DELLA protein RGA1 (RGA-like protein 1) (BrRGA1)| Length = 573 Score = 30.8 bits (68), Expect = 3.3 Identities = 20/50 (40%), Positives = 27/50 (54%) Frame = -2 Query: 553 ISYAINSGLPILGPALWKALLLNLGDPPSLPLPQGSHGEAEPHADHRHRL 404 I +++N GL PAL +AL L G PPS L G A ++DH H + Sbjct: 313 IDFSMNQGLQ--WPALMQALALREGGPPSFRL-TGIGPPAADNSDHLHEV 359
>PSAA_PROMP (Q9RC08) Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)| Length = 767 Score = 30.8 bits (68), Expect = 3.3 Identities = 18/59 (30%), Positives = 28/59 (47%) Frame = -2 Query: 586 LVINLVGMVAGISYAINSGLPILGPALWKALLLNLGDPPSLPLPQGSHGEAEPHADHRH 410 L ++ ++ G Y N G+ G ++ + L GDP P P+G G E A+ RH Sbjct: 314 LAFGVIAIIGGHMYRTNYGI---GHSMKEILDSQQGDPILFPAPKGHQGLFEFMAESRH 369
>FOXL2_HUMAN (P58012) Forkhead box protein L2| Length = 376 Score = 30.8 bits (68), Expect = 3.3 Identities = 14/31 (45%), Positives = 15/31 (48%) Frame = -2 Query: 484 LGDPPSLPLPQGSHGEAEPHADHRHRLVDPP 392 LG PP+ P P H PHA H H PP Sbjct: 277 LGGPPAAP-PPPPHPHPHPHAHHLHAAAAPP 306
>HIS5_SYMTH (Q67KH8) Imidazole glycerol phosphate synthase subunit hisH (EC| 2.4.2.-) (IGP synthase glutamine amidotransferase subunit) (IGP synthase subunit hisH) (ImGP synthase subunit hisH) (IGPS subunit hisH) Length = 212 Score = 30.4 bits (67), Expect = 4.2 Identities = 22/69 (31%), Positives = 26/69 (37%), Gaps = 18/69 (26%) Frame = -2 Query: 568 GMVAGISYAINSGLPILGPALWKALLLNLGD------------------PPSLPLPQGSH 443 G+ + A +G P+LG L LLL GD P LPLPQ Sbjct: 62 GLDQAVRQAAAAGRPVLGICLGMQLLLAEGDEGGPRPGLGLLEGRVARLPDGLPLPQIGW 121 Query: 442 GEAEPHADH 416 EP DH Sbjct: 122 NLVEPQRDH 130
>EXP9_STRR6 (P0A4D8) Probable ATP-dependent RNA helicase exp9 (EC 3.6.1.-)| (Exported protein 9) Length = 524 Score = 30.0 bits (66), Expect = 5.6 Identities = 17/51 (33%), Positives = 24/51 (47%) Frame = +1 Query: 190 LDKNPSVFIYNQKIPSNPLRYLH*GGRYSRAPMIRSAVDAALPHGNGLLGI 342 LD + +YN IP +P Y+H GR RA ++ P+ G L I Sbjct: 303 LDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI 353
>EXP9_STRPN (P0A4D7) Probable ATP-dependent RNA helicase exp9 (EC 3.6.1.-)| (Exported protein 9) Length = 524 Score = 30.0 bits (66), Expect = 5.6 Identities = 17/51 (33%), Positives = 24/51 (47%) Frame = +1 Query: 190 LDKNPSVFIYNQKIPSNPLRYLH*GGRYSRAPMIRSAVDAALPHGNGLLGI 342 LD + +YN IP +P Y+H GR RA ++ P+ G L I Sbjct: 303 LDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI 353
>BRD4_MOUSE (Q9ESU6) Bromodomain-containing protein 4 (Mitotic| chromosome-associated protein) (MCAP) Length = 1400 Score = 29.6 bits (65), Expect = 7.2 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 11/74 (14%) Frame = -2 Query: 541 INSGLPILGPALWKALLLNLGD---------PPSLP--LPQGSHGEAEPHADHRHRLVDP 395 I + +P+L P L ++ +G P LP LPQ PH + +H +V P Sbjct: 803 ITAQVPVLEPQLPGSVFDPIGHFTQPILHLPQPELPPHLPQPPEHSTPPHLN-QHAVVSP 861 Query: 394 PRLHLLPPLGEDRP 353 P LH P RP Sbjct: 862 PALHNALPQQPSRP 875
>YD3A_SCHPO (Q10274) Hypothetical protein C13G7.10 in chromosome I| Length = 390 Score = 29.6 bits (65), Expect = 7.2 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%) Frame = -2 Query: 493 LLNLGDPPSLPL-PQGSHGEAEPHADHRHRLVDPPRLHLLPPLGED 359 L + G PPSLP+ P S +P + P LHL PPL + Sbjct: 311 LFSAGQPPSLPISPSTSQNSVQPFPFS----IQQPPLHLEPPLSSN 352
>RGA_ARATH (Q9SLH3) DELLA protein RGA (Repressor on the ga1-3 mutant)| (GAI-related sequence) (Restoration of growth on ammonia protein 1) Length = 587 Score = 29.6 bits (65), Expect = 7.2 Identities = 19/50 (38%), Positives = 27/50 (54%) Frame = -2 Query: 553 ISYAINSGLPILGPALWKALLLNLGDPPSLPLPQGSHGEAEPHADHRHRL 404 I +++N GL PAL +AL L G PP+ L G A ++DH H + Sbjct: 326 IDFSMNQGLQ--WPALMQALALREGGPPTFRL-TGIGPPAPDNSDHLHEV 372
>PYGO_DROME (Q9V9W8) Protein pygopus (Protein gammy legs)| Length = 815 Score = 29.6 bits (65), Expect = 7.2 Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 12/65 (18%) Frame = -2 Query: 487 NLGDPPSLPLPQGSHGEAEPHADHRHR------------LVDPPRLHLLPPLGEDRPFHF 344 ++G P+ + G HG A PH H H + PP H+ P G P H Sbjct: 616 HMGGGPNPHMMGGPHGNAGPHMGHGHMGGVPGPGPGPGGMNGPPHPHMSPHHG--HPHHH 673 Query: 343 RYPEG 329 P G Sbjct: 674 HNPMG 678
>FA43B_HUMAN (Q6ZT52) Protein FAM43B| Length = 329 Score = 29.6 bits (65), Expect = 7.2 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = +2 Query: 314 CPMATAFWVSEMKGSIFTQRREKMEARRIDQTMTM 418 CP W E G +F RR+K+E + D T T+ Sbjct: 40 CPDLLPDWPLERLGRVFRSRRQKVELNKEDPTYTV 74
>CRCB_CHRVO (Q7NWP1) Protein crcB homolog| Length = 126 Score = 29.3 bits (64), Expect = 9.5 Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 1/40 (2%) Frame = -2 Query: 604 IPPTTVLVINLVG-MVAGISYAINSGLPILGPALWKALLL 488 +PP T L NLVG + G++ A+ + +P+L P LW+ L++ Sbjct: 33 LPPGT-LAANLVGGYIIGVAVALFADMPMLSP-LWRLLII 70
>FOXL2_MOUSE (O88470) Forkhead box protein L2 (Pituitary forkhead factor)| (P-Frk) Length = 375 Score = 29.3 bits (64), Expect = 9.5 Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 2/33 (6%) Frame = -2 Query: 484 LGDPPSLPLPQGS--HGEAEPHADHRHRLVDPP 392 LG PP+ P P H PHA H H PP Sbjct: 273 LGGPPAAPPPPPPPPHPHPHPHAHHLHAAAAPP 305 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,581,111 Number of Sequences: 219361 Number of extensions: 1929604 Number of successful extensions: 5438 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 5177 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5431 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5481822624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
