ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags37n06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_466737.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3376 Score = 113 bits (57), Expect = 9e-22 Identities = 145/175 (82%), Gaps = 1/175 (0%) Strand = Plus / Minus Query: 493 agttcctctccacaaagttgaccatgttgaattcattctcaaacatagggtctgtcggnn 552 ||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| || Sbjct: 2961 agttcttctccacaaagttgacaatgttgagctcattctcaaacatagggtctgttgg-t 2903 Query: 553 nnnnnaccagtgagcatctccaggtgtactatttcgaaactgtaaacgtccccatggatt 612 ||| || |||||||| || |||||||| | ||||| ||||| ||||||| || Sbjct: 2902 cttttacctgtcagcatctctagaagtactattccaaaactataaacatccccatatgtt 2843 Query: 613 gatgcatggacactttgagcatactctggagctttgtaccctattgttcccttca 667 ||||||||| ||| |||||||||||||||||| | |||||||| |||||||||| Sbjct: 2842 gatgcatggccacactgagcatactctggagctatataccctatagttcccttca 2788 Score = 63.9 bits (32), Expect = 7e-07 Identities = 35/36 (97%) Strand = Plus / Minus Query: 711 aatgccgaagtctcccaaataagcattcatatcatc 746 ||||||||||||||||||||| |||||||||||||| Sbjct: 2720 aatgccgaagtctcccaaatatgcattcatatcatc 2685
>dbj|AK100073.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170D14, full insert sequence Length = 3376 Score = 113 bits (57), Expect = 9e-22 Identities = 145/175 (82%), Gaps = 1/175 (0%) Strand = Plus / Minus Query: 493 agttcctctccacaaagttgaccatgttgaattcattctcaaacatagggtctgtcggnn 552 ||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| || Sbjct: 2961 agttcttctccacaaagttgacaatgttgagctcattctcaaacatagggtctgttgg-t 2903 Query: 553 nnnnnaccagtgagcatctccaggtgtactatttcgaaactgtaaacgtccccatggatt 612 ||| || |||||||| || |||||||| | ||||| ||||| ||||||| || Sbjct: 2902 cttttacctgtcagcatctctagaagtactattccaaaactataaacatccccatatgtt 2843 Query: 613 gatgcatggacactttgagcatactctggagctttgtaccctattgttcccttca 667 ||||||||| ||| |||||||||||||||||| | |||||||| |||||||||| Sbjct: 2842 gatgcatggccacactgagcatactctggagctatataccctatagttcccttca 2788 Score = 63.9 bits (32), Expect = 7e-07 Identities = 35/36 (97%) Strand = Plus / Minus Query: 711 aatgccgaagtctcccaaataagcattcatatcatc 746 ||||||||||||||||||||| |||||||||||||| Sbjct: 2720 aatgccgaagtctcccaaatatgcattcatatcatc 2685
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 81.8 bits (41), Expect = 3e-12 Identities = 120/147 (81%), Gaps = 1/147 (0%) Strand = Plus / Minus Query: 493 agttcctctccacaaagttgaccatgttgaattcattctcaaacatagggtctgtcggnn 552 ||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| || Sbjct: 24350269 agttcttctccacaaagttgacaatgttgagctcattctcaaacatagggtctgttgg-t 24350211 Query: 553 nnnnnaccagtgagcatctccaggtgtactatttcgaaactgtaaacgtccccatggatt 612 ||| || |||||||| || |||||||| | ||||| ||||| ||||||| || Sbjct: 24350210 cttttacctgtcagcatctctagaagtactattccaaaactataaacatccccatatgtt 24350151 Query: 613 gatgcatggacactttgagcatactct 639 ||||||||| ||| |||||||||||| Sbjct: 24350150 gatgcatggccacactgagcatactct 24350124 Score = 63.9 bits (32), Expect = 7e-07 Identities = 35/36 (97%) Strand = Plus / Minus Query: 711 aatgccgaagtctcccaaataagcattcatatcatc 746 ||||||||||||||||||||| |||||||||||||| Sbjct: 24349918 aatgccgaagtctcccaaatatgcattcatatcatc 24349883 Score = 61.9 bits (31), Expect = 3e-06 Identities = 49/55 (89%) Strand = Plus / Minus Query: 493 agttcctctccacaaagttgaccatgttgaattcattctcaaacatagggtctgt 547 ||||| |||||| ||||||||| ||||||| ||||||||||||||||| ||||| Sbjct: 24337978 agttcttctccataaagttgacaatgttgagctcattctcaaacataggatctgt 24337924 Score = 54.0 bits (27), Expect = 7e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 706 cttgcaatgccgaagtctcccaaataagcattcatatca 744 |||| ||| ||||||||||||||||| |||||||||||| Sbjct: 24337632 cttgaaattccgaagtctcccaaatatgcattcatatca 24337594 Score = 42.1 bits (21), Expect = 2.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 706 cttgcaatgccgaagtctcccaaataagcattcatatcatc 746 ||||||||||| || ||||||||| ||||||||| ||||| Sbjct: 24372961 cttgcaatgccaaaatctcccaaaagagcattcatgtcatc 24372921
>dbj|AP004747.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0407A09 Length = 103788 Score = 81.8 bits (41), Expect = 3e-12 Identities = 120/147 (81%), Gaps = 1/147 (0%) Strand = Plus / Minus Query: 493 agttcctctccacaaagttgaccatgttgaattcattctcaaacatagggtctgtcggnn 552 ||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| || Sbjct: 79807 agttcttctccacaaagttgacaatgttgagctcattctcaaacatagggtctgttgg-t 79749 Query: 553 nnnnnaccagtgagcatctccaggtgtactatttcgaaactgtaaacgtccccatggatt 612 ||| || |||||||| || |||||||| | ||||| ||||| ||||||| || Sbjct: 79748 cttttacctgtcagcatctctagaagtactattccaaaactataaacatccccatatgtt 79689 Query: 613 gatgcatggacactttgagcatactct 639 ||||||||| ||| |||||||||||| Sbjct: 79688 gatgcatggccacactgagcatactct 79662 Score = 63.9 bits (32), Expect = 7e-07 Identities = 35/36 (97%) Strand = Plus / Minus Query: 711 aatgccgaagtctcccaaataagcattcatatcatc 746 ||||||||||||||||||||| |||||||||||||| Sbjct: 79456 aatgccgaagtctcccaaatatgcattcatatcatc 79421 Score = 61.9 bits (31), Expect = 3e-06 Identities = 49/55 (89%) Strand = Plus / Minus Query: 493 agttcctctccacaaagttgaccatgttgaattcattctcaaacatagggtctgt 547 ||||| |||||| ||||||||| ||||||| ||||||||||||||||| ||||| Sbjct: 67516 agttcttctccataaagttgacaatgttgagctcattctcaaacataggatctgt 67462 Score = 54.0 bits (27), Expect = 7e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 706 cttgcaatgccgaagtctcccaaataagcattcatatca 744 |||| ||| ||||||||||||||||| |||||||||||| Sbjct: 67170 cttgaaattccgaagtctcccaaatatgcattcatatca 67132 Score = 42.1 bits (21), Expect = 2.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 706 cttgcaatgccgaagtctcccaaataagcattcatatcatc 746 ||||||||||| || ||||||||| ||||||||| ||||| Sbjct: 102499 cttgcaatgccaaaatctcccaaaagagcattcatgtcatc 102459
>ref|XM_466735.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2994 Score = 73.8 bits (37), Expect = 7e-10 Identities = 140/175 (80%), Gaps = 1/175 (0%) Strand = Plus / Minus Query: 493 agttcctctccacaaagttgaccatgttgaattcattctcaaacatagggtctgtcggnn 552 ||||| |||||| ||||||||| ||||||| ||||||||||||||||| ||||| || Sbjct: 2716 agttcttctccataaagttgacaatgttgagctcattctcaaacataggatctgttgg-t 2658 Query: 553 nnnnnaccagtgagcatctccaggtgtactatttcgaaactgtaaacgtccccatggatt 612 ||| || |||||||| || |||||||| | |||| |||||| ||||||| | | Sbjct: 2657 cttttacctgtcagcatctctagaagtactattccaaaaccgtaaacatccccataggtc 2598 Query: 613 gatgcatggacactttgagcatactctggagctttgtaccctattgttcccttca 667 ||||||| | ||| | ||||||||||||||| | |||||||| |||||||||| Sbjct: 2597 gatgcattgccacactctgcatactctggagctatataccctatggttcccttca 2543 Score = 54.0 bits (27), Expect = 7e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 706 cttgcaatgccgaagtctcccaaataagcattcatatca 744 |||| ||| ||||||||||||||||| |||||||||||| Sbjct: 2480 cttgaaattccgaagtctcccaaatatgcattcatatca 2442
>dbj|AK068010.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129F19, full insert sequence Length = 2701 Score = 58.0 bits (29), Expect = 4e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 714 gccgaagtctcccaaataagcattcatatcatc 746 |||||||||||||||||| |||||||||||||| Sbjct: 2701 gccgaagtctcccaaatatgcattcatatcatc 2669
>ref|NM_104393.3| Arabidopsis thaliana ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase AT1G55200 mRNA, complete cds Length = 2153 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Minus Query: 623 cactttgagcatactctggagct 645 ||||||||||||||||||||||| Sbjct: 1677 cactttgagcatactctggagct 1655
>gb|AY096404.1| Arabidopsis thaliana putative protein kinase (At1g55200) mRNA, complete cds Length = 2062 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Minus Query: 623 cactttgagcatactctggagct 645 ||||||||||||||||||||||| Sbjct: 1663 cactttgagcatactctggagct 1641
>gb|AY063963.1| Arabidopsis thaliana putative protein kinase (At1g55200) mRNA, complete cds Length = 2169 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Minus Query: 623 cactttgagcatactctggagct 645 ||||||||||||||||||||||| Sbjct: 1677 cactttgagcatactctggagct 1655
>gb|AC027034.10|AC027034 Arabidopsis thaliana chromosome 1 BAC F7A10 genomic sequence, complete sequence Length = 101954 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Minus Query: 623 cactttgagcatactctggagct 645 ||||||||||||||||||||||| Sbjct: 88528 cactttgagcatactctggagct 88506
>ref|XM_466740.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3406 Score = 42.1 bits (21), Expect = 2.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 706 cttgcaatgccgaagtctcccaaataagcattcatatcatc 746 ||||||||||| || ||||||||| ||||||||| ||||| Sbjct: 2664 cttgcaatgccaaaatctcccaaaagagcattcatgtcatc 2624
>gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence Length = 1653225 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 308 tacttctcttatgttcatgcg 328 ||||||||||||||||||||| Sbjct: 1053275 tacttctcttatgttcatgcg 1053295
>gb|AC159430.1| Trypanosoma brucei chromosome 3 clone RPCI93-28C22, complete sequence Length = 142068 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 308 tacttctcttatgttcatgcg 328 ||||||||||||||||||||| Sbjct: 94302 tacttctcttatgttcatgcg 94282
>dbj|AP004097.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1792_D02 Length = 141649 Score = 42.1 bits (21), Expect = 2.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 706 cttgcaatgccgaagtctcccaaataagcattcatatcatc 746 ||||||||||| || ||||||||| ||||||||| ||||| Sbjct: 1167 cttgcaatgccaaaatctcccaaaagagcattcatgtcatc 1127
>dbj|AK111664.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013154A15, full insert sequence Length = 2210 Score = 42.1 bits (21), Expect = 2.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 706 cttgcaatgccgaagtctcccaaataagcattcatatcatc 746 ||||||||||| || ||||||||| ||||||||| ||||| Sbjct: 1382 cttgcaatgccaaaatctcccaaaagagcattcatgtcatc 1342
>dbj|AK065018.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001F17, full insert sequence Length = 3475 Score = 42.1 bits (21), Expect = 2.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 706 cttgcaatgccgaagtctcccaaataagcattcatatcatc 746 ||||||||||| || ||||||||| ||||||||| ||||| Sbjct: 2664 cttgcaatgccaaaatctcccaaaagagcattcatgtcatc 2624 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,229,803 Number of Sequences: 3902068 Number of extensions: 5229803 Number of successful extensions: 94590 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 94506 Number of HSP's gapped (non-prelim): 84 length of query: 750 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 727 effective length of database: 17,143,297,704 effective search space: 12463177430808 effective search space used: 12463177430808 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
