ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags37n05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK102852.1| Oryza sativa (japonica cultivar-group) cDNA clon... 159 2e-35
2dbj|AK058460.1| Oryza sativa (japonica cultivar-group) cDNA clon... 159 2e-35
3gb|AY017415.1| Oryza sativa subsp. japonica nuclear cap-binding ... 151 4e-33
4dbj|AK058969.1| Oryza sativa (japonica cultivar-group) cDNA clon... 151 4e-33
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 90 1e-14
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 90 1e-14
7gb|AC134231.2| Oryza sativa (japonica cultivar-group) chromosome... 90 1e-14
8gb|AY111920.1| Zea mays CL17088_1 mRNA sequence 74 7e-10
9gb|AY903394.1| Memecylon thouarsianum clone 3.7 glyceraldehyde 3... 52 0.003
10gb|AY903393.1| Memecylon thouarsianum clone 3.6 glyceraldehyde 3... 52 0.003
11gb|AY903391.1| Memecylon roseum clone 2.18 glyceraldehyde 3-phos... 52 0.003
12gb|AY903390.1| Memecylon roseum clone 2.17 glyceraldehyde 3-phos... 52 0.003
13gb|AY903389.1| Memecylon lateriflorum clone 1.8 glyceraldehyde 3... 52 0.003
14gb|AY903388.1| Memecylon lateriflorum clone 1.6 glyceraldehyde 3... 52 0.003
15gb|AY903383.1| Lijndenia procteri clone 5.4 glyceraldehyde 3-pho... 52 0.003
16gb|AY903381.1| Lijndenia danguyana clone 2.2 glyceraldehyde 3-ph... 52 0.003
17gb|AY903396.1| Mouriri sagotiana clone 6.1 glyceraldehyde 3-phos... 50 0.010
18gb|AY903382.1| Lijndenia procteri clone 5.3 glyceraldehyde 3-pho... 48 0.040
19gb|AY903380.1| Lijndenia cf. brenanii Stone et al. 2438 clone 4.... 48 0.040
20gb|AY903379.1| Lijndenia cf. brenanii Stone et al. 2438 clone 4.... 48 0.040
21gb|AY903378.1| Lijndenia cf. brenanii Stone et al. 2438 clone 4.... 48 0.040
22gb|AC133897.15| Mus musculus chromosome 5, clone RP24-357G2, com... 46 0.16
23gb|AY903410.1| Warneckea sansibarica clone 1.3 glyceraldehyde 3-... 44 0.63
24gb|AY903409.1| Warneckea sansibarica clone 1.2 glyceraldehyde 3-... 44 0.63
25gb|AY903408.1| Warneckea sansibarica clone 1.1 glyceraldehyde 3-... 44 0.63
26gb|AY903407.1| Warneckea sansibarica clone 3.5 glyceraldehyde 3-... 44 0.63
27gb|AY903406.1| Warneckea membranifolia clone 1.3 glyceraldehyde ... 44 0.63
28gb|AY903405.1| Warneckea membranifolia clone 1.1 glyceraldehyde ... 44 0.63
29gb|AY903402.1| Warneckea fascicularis var. mangrovensis clone 2.... 44 0.63
30gb|AY903401.1| Warneckea fascicularis var. mangrovensis clone 2.... 44 0.63
31gb|AY903400.1| Warneckea fascicularis var. mangrovensis clone 2.... 44 0.63
32gb|AY903398.1| Spathandra blakeoides clone 5.3 glyceraldehyde 3-... 44 0.63
33gb|AY903397.1| Spathandra blakeoides clone 5.2 glyceraldehyde 3-... 44 0.63
34gb|AY903392.1| Memecylon thouarsianum clone 3.5 glyceraldehyde 3... 44 0.63
35emb|AL591789.1|SME591789 Sinorhizobium meliloti 1021 complete ch... 42 2.5
36gb|AY903395.1| Mouriri dumetosa clone 5.5 glyceraldehyde 3-phosp... 42 2.5
37gb|AC102248.19| Mus musculus chromosome 18, clone RP24-158I9, co... 40 9.8
38emb|AL589725.6| Human DNA sequence from clone RP11-280I21 on chr... 40 9.8
39gb|AC134384.6| Mus musculus strain C57BL/6J clone rp23-393d21, c... 40 9.8
40gb|AC134383.11| Mus musculus strain C57BL/6J clone rp23-348k4, c... 40 9.8
41gb|AY903399.1| Votomita guianensis clone 3.1 glyceraldehyde 3-ph... 40 9.8
42gb|AC008019.60| Mus musculus strain 129S6/SvEvTac chromosome 16 ... 40 9.8
43gb|BC019151.1| Mus musculus transmembrane protein 116, mRNA (cDN... 40 9.8
44gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 40 9.8
45ref|NM_029912.1| Mus musculus transmembrane protein 116 (Tmem116... 40 9.8
46dbj|AK039773.1| Mus musculus adult male spinal cord cDNA, RIKEN ... 40 9.8
47dbj|AK015791.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 9.8
48dbj|AK015103.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 9.8
49dbj|AK021099.1| Mus musculus adult male corpus striatum cDNA, RI... 40 9.8
50gb|AY967407.1| Enterobacteria phage RB43, complete genome 40 9.8
51gb|AC102178.21| Mus musculus chromosome 7, clone RP24-70C24, com... 40 9.8
52gb|AF124742.1|AF124742 Euprymna scolopes guanine nucleotide-bind... 40 9.8
53dbj|AP003304.2| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 9.8
54emb|BX088719.6| Zebrafish DNA sequence from clone CH211-207H2 in... 40 9.8
55emb|AL954769.9| Zebrafish DNA sequence from clone CH211-262A21 i... 40 9.8
56gb|AC083895.21| Mus musculus strain C57BL/6J chromosome 16 clone... 40 9.8 
>dbj|AK102852.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033110I07, full
            insert sequence
          Length = 2992

 Score =  159 bits (80), Expect = 2e-35
 Identities = 146/168 (86%)
 Strand = Plus / Minus

                                                                        
Query: 431  gtctgcacaaaccggagaatgcagctttccagatgagagggtgaatactcccgacgaaaa 490
            ||||||||||||||||||| |||||||||| ||| |||||||||||| |||| |||||||
Sbjct: 2636 gtctgcacaaaccggagaaagcagctttccggataagagggtgaatattcccaacgaaaa 2577

                                                                        
Query: 491  cctcctcgtccaacatgccgatgtgagaccaaatctctgttgcatactgtcgagaaaatg 550
             |||||  ||||||||| | || || ||||| ||||| || ||||| || |||||||| |
Sbjct: 2576 tctcctgatccaacatggcaatatgggaccagatctcagtagcatattgacgagaaaacg 2517

                                                            
Query: 551  actttagataccccaatgtgcataggcaccattgctcaagctctccaa 598
            |||| ||||| ||||||||||| || ||||||||||||||||||||||
Sbjct: 2516 acttgagatagcccaatgtgcagagacaccattgctcaagctctccaa 2469



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                    
Query: 634  tgactattgttatctgctccattttcattgtctatctccatagttgccgcttcagg 689
            ||||||| ||||||| ||||||||||||||||||| ||||| ||||  ||||||||
Sbjct: 2433 tgactatcgttatctcctccattttcattgtctatttccatggttgttgcttcagg 2378
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>dbj|AK058460.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-A01, full
           insert sequence
          Length = 1182

 Score =  159 bits (80), Expect = 2e-35
 Identities = 146/168 (86%)
 Strand = Plus / Minus

                                                                       
Query: 431 gtctgcacaaaccggagaatgcagctttccagatgagagggtgaatactcccgacgaaaa 490
           ||||||||||||||||||| |||||||||| ||| |||||||||||| |||| |||||||
Sbjct: 824 gtctgcacaaaccggagaaagcagctttccggataagagggtgaatattcccaacgaaaa 765

                                                                       
Query: 491 cctcctcgtccaacatgccgatgtgagaccaaatctctgttgcatactgtcgagaaaatg 550
            |||||  ||||||||| | || || ||||| ||||| || ||||| || |||||||| |
Sbjct: 764 tctcctgatccaacatggcaatatgggaccagatctcagtagcatattgacgagaaaacg 705

                                                           
Query: 551 actttagataccccaatgtgcataggcaccattgctcaagctctccaa 598
           |||| ||||| ||||||||||| || ||||||||||||||||||||||
Sbjct: 704 acttgagatagcccaatgtgcagagacaccattgctcaagctctccaa 657



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                   
Query: 634 tgactattgttatctgctccattttcattgtctatctccatagttgccgcttcagg 689
           ||||||| ||||||| ||||||||||||||||||| ||||| ||||  ||||||||
Sbjct: 621 tgactatcgttatctcctccattttcattgtctatttccatggttgttgcttcagg 566
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>gb|AY017415.1| Oryza sativa subsp. japonica nuclear cap-binding protein CBP80 mRNA,
            complete cds
          Length = 3009

 Score =  151 bits (76), Expect = 4e-33
 Identities = 146/168 (86%), Gaps = 1/168 (0%)
 Strand = Plus / Minus

                                                                        
Query: 431  gtctgcacaaaccggagaatgcagctttccagatgagagggtgaatactcccgacgaaaa 490
            ||||||||||||||||||| |||||||||| ||| |||||||||||| |||| |||||||
Sbjct: 2652 gtctgcacaaaccggagaa-gcagctttccggataagagggtgaatattcccaacgaaaa 2594

                                                                        
Query: 491  cctcctcgtccaacatgccgatgtgagaccaaatctctgttgcatactgtcgagaaaatg 550
             |||||  ||||||||| | || || ||||| ||||| || ||||| || |||||||| |
Sbjct: 2593 tctcctgatccaacatggcaatatgggaccagatctcagtagcatattgacgagaaaacg 2534

                                                            
Query: 551  actttagataccccaatgtgcataggcaccattgctcaagctctccaa 598
            |||| ||||| ||||||||||| || ||||||||||||||||||||||
Sbjct: 2533 acttgagatagcccaatgtgcagagacaccattgctcaagctctccaa 2486



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                    
Query: 634  tgactattgttatctgctccattttcattgtctatctccatagttgccgcttcagg 689
            ||||||| ||||||| ||||||||||||||||||| ||||| ||||  ||||||||
Sbjct: 2450 tgactatcgttatctcctccattttcattgtctatttccatggttgttgcttcagg 2395
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>dbj|AK058969.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-C11, full
            insert sequence
          Length = 1566

 Score =  151 bits (76), Expect = 4e-33
 Identities = 145/168 (86%)
 Strand = Plus / Minus

                                                                        
Query: 431  gtctgcacaaaccggagaatgcagctttccagatgagagggtgaatactcccgacgaaaa 490
            ||||||||||||||||||| |||||||||| ||| |||||||||||| |||| |||||||
Sbjct: 1333 gtctgcacaaaccggagaaagcagctttccggataagagggtgaatattcccaacgaaaa 1274

                                                                        
Query: 491  cctcctcgtccaacatgccgatgtgagaccaaatctctgttgcatactgtcgagaaaatg 550
             |||||  ||||||||| | || || ||||| ||||| || ||||| || |||||||| |
Sbjct: 1273 tctcctgatccaacatggcaatatgggaccagatctcagtagcatattgacgagaaaacg 1214

                                                            
Query: 551  actttagataccccaatgtgcataggcaccattgctcaagctctccaa 598
            |||  ||||| ||||||||||| || ||||||||||||||||||||||
Sbjct: 1213 actcgagatagcccaatgtgcagagacaccattgctcaagctctccaa 1166



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                    
Query: 634  tgactattgttatctgctccattttcattgtctatctccatagttgccgcttcagg 689
            ||||||| ||||||| ||||||||||||||||||| ||||| ||||  ||||||||
Sbjct: 1130 tgactatcgttatctcctccattttcattgtctatttccatggttgttgcttcagg 1075
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 69/77 (89%)
 Strand = Plus / Minus

                                                                            
Query: 431      gtctgcacaaaccggagaatgcagctttccagatgagagggtgaatactcccgacgaaaa 490
                ||||||||||||||||||| |||||||||| ||| |||||||||||| |||| |||||||
Sbjct: 12962271 gtctgcacaaaccggagaaagcagctttccggataagagggtgaatattcccaacgaaaa 12962212

                                 
Query: 491      cctcctcgtccaacatg 507
                 |||||  |||||||||
Sbjct: 12962211 tctcctgatccaacatg 12962195



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 60/67 (89%)
 Strand = Plus / Minus

                                                                            
Query: 532      gcatactgtcgagaaaatgactttagataccccaatgtgcataggcaccattgctcaagc 591
                ||||| || |||||||| ||||| ||||| ||||||||||| || |||||||||||||||
Sbjct: 12961606 gcatattgacgagaaaacgacttgagatagcccaatgtgcagagacaccattgctcaagc 12961547

                       
Query: 592      tctccaa 598
                |||||||
Sbjct: 12961546 tctccaa 12961540



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                     
Query: 637      ctattgttatctgctccattttcattgtctatctccatagttgccgcttcagg 689
                |||| ||||||| ||||||||||||||||||| ||||| ||||  ||||||||
Sbjct: 12961100 ctatcgttatctcctccattttcattgtctatttccatggttgttgcttcagg 12961048
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 69/77 (89%)
 Strand = Plus / Minus

                                                                            
Query: 431      gtctgcacaaaccggagaatgcagctttccagatgagagggtgaatactcccgacgaaaa 490
                ||||||||||||||||||| |||||||||| ||| |||||||||||| |||| |||||||
Sbjct: 12959046 gtctgcacaaaccggagaaagcagctttccggataagagggtgaatattcccaacgaaaa 12958987

                                 
Query: 491      cctcctcgtccaacatg 507
                 |||||  |||||||||
Sbjct: 12958986 tctcctgatccaacatg 12958970



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 60/67 (89%)
 Strand = Plus / Minus

                                                                            
Query: 532      gcatactgtcgagaaaatgactttagataccccaatgtgcataggcaccattgctcaagc 591
                ||||| || |||||||| ||||| ||||| ||||||||||| || |||||||||||||||
Sbjct: 12958381 gcatattgacgagaaaacgacttgagatagcccaatgtgcagagacaccattgctcaagc 12958322

                       
Query: 592      tctccaa 598
                |||||||
Sbjct: 12958321 tctccaa 12958315



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                     
Query: 637      ctattgttatctgctccattttcattgtctatctccatagttgccgcttcagg 689
                |||| ||||||| ||||||||||||||||||| ||||| ||||  ||||||||
Sbjct: 12957875 ctatcgttatctcctccattttcattgtctatttccatggttgttgcttcagg 12957823
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>gb|AC134231.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0006D11, complete sequence
          Length = 176637

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 69/77 (89%)
 Strand = Plus / Minus

                                                                         
Query: 431   gtctgcacaaaccggagaatgcagctttccagatgagagggtgaatactcccgacgaaaa 490
             ||||||||||||||||||| |||||||||| ||| |||||||||||| |||| |||||||
Sbjct: 39969 gtctgcacaaaccggagaaagcagctttccggataagagggtgaatattcccaacgaaaa 39910

                              
Query: 491   cctcctcgtccaacatg 507
              |||||  |||||||||
Sbjct: 39909 tctcctgatccaacatg 39893



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 60/67 (89%)
 Strand = Plus / Minus

                                                                         
Query: 532   gcatactgtcgagaaaatgactttagataccccaatgtgcataggcaccattgctcaagc 591
             ||||| || |||||||| ||||| ||||| ||||||||||| || |||||||||||||||
Sbjct: 39304 gcatattgacgagaaaacgacttgagatagcccaatgtgcagagacaccattgctcaagc 39245

                    
Query: 592   tctccaa 598
             |||||||
Sbjct: 39244 tctccaa 39238



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                  
Query: 637   ctattgttatctgctccattttcattgtctatctccatagttgccgcttcagg 689
             |||| ||||||| ||||||||||||||||||| ||||| ||||  ||||||||
Sbjct: 38798 ctatcgttatctcctccattttcattgtctatttccatggttgttgcttcagg 38746
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>gb|AY111920.1| Zea mays CL17088_1 mRNA sequence
          Length = 604

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 76/89 (85%)
 Strand = Plus / Minus

                                                                       
Query: 517 gaccaaatctctgttgcatactgtcgagaaaatgactttagataccccaatgtgcatagg 576
           |||||||||||  ||||||| || || ||||||||||| ||||| |||| ||| || || 
Sbjct: 319 gaccaaatctcacttgcatattggcgggaaaatgacttgagataacccagtgtacagaga 260

                                        
Query: 577 caccattgctcaagctctccaatattata 605
           ||||| |||||||||||||||| ||||||
Sbjct: 259 caccactgctcaagctctccaacattata 231



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                               
Query: 636 actattgttatctgctccattttcattgtctatctccatagttgccgcttca 687
           |||||| ||||||||||||||||||||||| |||||||| | ||| ||||||
Sbjct: 200 actattattatctgctccattttcattgtcaatctccattgntgctgcttca 149
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>gb|AY903394.1| Memecylon thouarsianum clone 3.7 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 843

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 241 aagagtgaccataggcaaatgaaact 266
           ||||||||||||||||||||||||||
Sbjct: 546 aagagtgaccataggcaaatgaaact 521
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>gb|AY903393.1| Memecylon thouarsianum clone 3.6 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 844

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 241 aagagtgaccataggcaaatgaaact 266
           ||||||||||||||||||||||||||
Sbjct: 546 aagagtgaccataggcaaatgaaact 521
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>gb|AY903391.1| Memecylon roseum clone 2.18 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 844

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 241 aagagtgaccataggcaaatgaaact 266
           ||||||||||||||||||||||||||
Sbjct: 546 aagagtgaccataggcaaatgaaact 521
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>gb|AY903390.1| Memecylon roseum clone 2.17 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 844

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 241 aagagtgaccataggcaaatgaaact 266
           ||||||||||||||||||||||||||
Sbjct: 546 aagagtgaccataggcaaatgaaact 521
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>gb|AY903389.1| Memecylon lateriflorum clone 1.8 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 847

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 241 aagagtgaccataggcaaatgaaact 266
           ||||||||||||||||||||||||||
Sbjct: 546 aagagtgaccataggcaaatgaaact 521
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>gb|AY903388.1| Memecylon lateriflorum clone 1.6 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 847

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 241 aagagtgaccataggcaaatgaaact 266
           ||||||||||||||||||||||||||
Sbjct: 546 aagagtgaccataggcaaatgaaact 521
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>gb|AY903383.1| Lijndenia procteri clone 5.4 glyceraldehyde 3-phosphate
           dehydrogenase-like (GapC) gene, complete sequence
          Length = 870

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 241 aagagtgaccataggcaaatgaaact 266
           ||||||||||||||||||||||||||
Sbjct: 570 aagagtgaccataggcaaatgaaact 545
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>gb|AY903381.1| Lijndenia danguyana clone 2.2 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 872

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 241 aagagtgaccataggcaaatgaaact 266
           ||||||||||||||||||||||||||
Sbjct: 571 aagagtgaccataggcaaatgaaact 546
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>gb|AY903396.1| Mouriri sagotiana clone 6.1 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 870

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 242 agagtgaccataggcaaatgaaact 266
           |||||||||||||||||||||||||
Sbjct: 568 agagtgaccataggcaaatgaaact 544
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>gb|AY903382.1| Lijndenia procteri clone 5.3 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 871

 Score = 48.1 bits (24), Expect = 0.040
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 241 aagagtgaccataggcaaatgaaa 264
           ||||||||||||||||||||||||
Sbjct: 570 aagagtgaccataggcaaatgaaa 547
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>gb|AY903380.1| Lijndenia cf. brenanii Stone et al. 2438 clone 4.3 glyceraldehyde
           3-phosphate dehydrogenase (GapC) gene, partial cds
          Length = 871

 Score = 48.1 bits (24), Expect = 0.040
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 241 aagagtgaccataggcaaatgaaa 264
           ||||||||||||||||||||||||
Sbjct: 570 aagagtgaccataggcaaatgaaa 547
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>gb|AY903379.1| Lijndenia cf. brenanii Stone et al. 2438 clone 4.2 glyceraldehyde
           3-phosphate dehydrogenase (GapC) gene, partial cds
          Length = 870

 Score = 48.1 bits (24), Expect = 0.040
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 241 aagagtgaccataggcaaatgaaa 264
           ||||||||||||||||||||||||
Sbjct: 569 aagagtgaccataggcaaatgaaa 546
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>gb|AY903378.1| Lijndenia cf. brenanii Stone et al. 2438 clone 4.1 glyceraldehyde
           3-phosphate dehydrogenase (GapC) gene, partial cds
          Length = 871

 Score = 48.1 bits (24), Expect = 0.040
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 241 aagagtgaccataggcaaatgaaa 264
           ||||||||||||||||||||||||
Sbjct: 570 aagagtgaccataggcaaatgaaa 547
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>gb|AC133897.15| Mus musculus chromosome 5, clone RP24-357G2, complete sequence
          Length = 177013

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 58    aatattttttctagcaagtacat 80
             |||||||||||||||||||||||
Sbjct: 59494 aatattttttctagcaagtacat 59472
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>gb|AY903410.1| Warneckea sansibarica clone 1.3 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 861

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 241 aagagtgaccataggcaaatgaaact 266
           |||||||||||||||| |||||||||
Sbjct: 570 aagagtgaccataggcgaatgaaact 545
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>gb|AY903409.1| Warneckea sansibarica clone 1.2 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 861

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 241 aagagtgaccataggcaaatgaaact 266
           |||||||||||||||| |||||||||
Sbjct: 570 aagagtgaccataggcgaatgaaact 545
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>gb|AY903408.1| Warneckea sansibarica clone 1.1 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 861

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 241 aagagtgaccataggcaaatgaaact 266
           |||||||||||||||| |||||||||
Sbjct: 570 aagagtgaccataggctaatgaaact 545
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>gb|AY903407.1| Warneckea sansibarica clone 3.5 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 861

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 241 aagagtgaccataggcaaatgaaact 266
           |||||||||||||||| |||||||||
Sbjct: 570 aagagtgaccataggcgaatgaaact 545
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>gb|AY903406.1| Warneckea membranifolia clone 1.3 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 876

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 241 aagagtgaccataggcaaatgaaact 266
           ||||||||||||||| ||||||||||
Sbjct: 571 aagagtgaccataggaaaatgaaact 546
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>gb|AY903405.1| Warneckea membranifolia clone 1.1 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 876

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 241 aagagtgaccataggcaaatgaaact 266
           ||||||||||||||| ||||||||||
Sbjct: 571 aagagtgaccataggaaaatgaaact 546
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>gb|AY903402.1| Warneckea fascicularis var. mangrovensis clone 2.5 glyceraldehyde
           3-phosphate dehydrogenase (GapC) gene, partial cds
          Length = 875

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 241 aagagtgaccataggcaaatgaaact 266
           ||||||||||||||| ||||||||||
Sbjct: 571 aagagtgaccataggaaaatgaaact 546
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>gb|AY903401.1| Warneckea fascicularis var. mangrovensis clone 2.2 glyceraldehyde
           3-phosphate dehydrogenase-like (GapC) gene, complete
           sequence
          Length = 876

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 241 aagagtgaccataggcaaatgaaact 266
           ||||||||||||||| ||||||||||
Sbjct: 571 aagagtgaccataggaaaatgaaact 546
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>gb|AY903400.1| Warneckea fascicularis var. mangrovensis clone 2.1 glyceraldehyde
           3-phosphate dehydrogenase-like (GapC) gene, complete
           sequence
          Length = 874

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 241 aagagtgaccataggcaaatgaaact 266
           ||||||||||||||| ||||||||||
Sbjct: 570 aagagtgaccataggaaaatgaaact 545
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>gb|AY903398.1| Spathandra blakeoides clone 5.3 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 848

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 241 aagagtgaccataggcaaatgaaact 266
           ||||||||||||||| ||||||||||
Sbjct: 547 aagagtgaccataggtaaatgaaact 522
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>gb|AY903397.1| Spathandra blakeoides clone 5.2 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 848

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 241 aagagtgaccataggcaaatgaaact 266
           |||||||||| |||||||||||||||
Sbjct: 547 aagagtgaccgtaggcaaatgaaact 522
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>gb|AY903392.1| Memecylon thouarsianum clone 3.5 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 843

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 241 aagagtgaccataggcaaatga 262
           ||||||||||||||||||||||
Sbjct: 546 aagagtgaccataggcaaatga 525
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>emb|AL591789.1|SME591789 Sinorhizobium meliloti 1021 complete chromosome; segment 8/12
          Length = 294800

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 675    agttgccgcttcaggatcgct 695
              |||||||||||||||||||||
Sbjct: 121708 agttgccgcttcaggatcgct 121728
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>gb|AY903395.1| Mouriri dumetosa clone 5.5 glyceraldehyde 3-phosphate dehydrogenase
           (GapC) gene, partial cds
          Length = 867

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 241 aagagtgaccataggcaaatgaaac 265
           |||||||||||| ||||||||||||
Sbjct: 567 aagagtgaccatgggcaaatgaaac 543
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>gb|AC102248.19| Mus musculus chromosome 18, clone RP24-158I9, complete sequence
          Length = 206000

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 625   caatccacttgactattgtt 644
             ||||||||||||||||||||
Sbjct: 76344 caatccacttgactattgtt 76325
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>emb|AL589725.6| Human DNA sequence from clone RP11-280I21 on chromosome 6, complete
            sequence
          Length = 30634

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 639  attgttatctgctccattttcatt 662
            ||||||||||||| ||||||||||
Sbjct: 7839 attgttatctgctgcattttcatt 7862
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>gb|AC134384.6| Mus musculus strain C57BL/6J clone rp23-393d21, complete sequence
          Length = 227620

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 178    ttaagtctggagcagcagag 197
              ||||||||||||||||||||
Sbjct: 153787 ttaagtctggagcagcagag 153768
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>gb|AC134383.11| Mus musculus strain C57BL/6J clone rp23-348k4, complete sequence
          Length = 227587

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 178    ttaagtctggagcagcagag 197
              ||||||||||||||||||||
Sbjct: 153756 ttaagtctggagcagcagag 153737
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>gb|AY903399.1| Votomita guianensis clone 3.1 glyceraldehyde 3-phosphate
           dehydrogenase (GapC) gene, partial cds
          Length = 872

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 246 tgaccataggcaaatgaaac 265
           ||||||||||||||||||||
Sbjct: 567 tgaccataggcaaatgaaac 548
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>gb|AC008019.60| Mus musculus strain 129S6/SvEvTac chromosome 16 clone rp21-519i24,
              complete sequence
          Length = 189707

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 178    ttaagtctggagcagcagag 197
              ||||||||||||||||||||
Sbjct: 138067 ttaagtctggagcagcagag 138086
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>gb|BC019151.1| Mus musculus transmembrane protein 116, mRNA (cDNA clone MGC:29263
           IMAGE:5064772), complete cds
          Length = 1268

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 376 aagaccatgatggtgaggaa 395
           ||||||||||||||||||||
Sbjct: 606 aagaccatgatggtgaggaa 587
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 482     cgacgaaaacctcctcgtcc 501
               ||||||||||||||||||||
Sbjct: 1017318 cgacgaaaacctcctcgtcc 1017299
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>ref|NM_029912.1| Mus musculus transmembrane protein 116 (Tmem116), mRNA
          Length = 1268

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 376 aagaccatgatggtgaggaa 395
           ||||||||||||||||||||
Sbjct: 606 aagaccatgatggtgaggaa 587
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>dbj|AK039773.1| Mus musculus adult male spinal cord cDNA, RIKEN full-length enriched
            library, clone:A330106A04 product:RIKEN cDNA C030022K24
            gene, full insert sequence
          Length = 2221

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 376  aagaccatgatggtgaggaa 395
            ||||||||||||||||||||
Sbjct: 1160 aagaccatgatggtgaggaa 1141
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>dbj|AK015791.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4930513P12 product:RIKEN cDNA 4930513P12
           gene, full insert sequence
          Length = 1185

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 376 aagaccatgatggtgaggaa 395
           ||||||||||||||||||||
Sbjct: 674 aagaccatgatggtgaggaa 655
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>dbj|AK015103.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4930406A18 product:hypothetical protein,
           full insert sequence
          Length = 1248

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 376 aagaccatgatggtgaggaa 395
           ||||||||||||||||||||
Sbjct: 866 aagaccatgatggtgaggaa 847
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>dbj|AK021099.1| Mus musculus adult male corpus striatum cDNA, RIKEN full-length
           enriched library, clone:C030022K24 product:weakly
           similar to HYPOTHETICAL 40.1 KDA PROTEIN (FRAGMENT)
           [Homo sapiens], full insert sequence
          Length = 1296

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 376 aagaccatgatggtgaggaa 395
           ||||||||||||||||||||
Sbjct: 655 aagaccatgatggtgaggaa 636
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>gb|AY967407.1| Enterobacteria phage RB43, complete genome
          Length = 180500

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 654    attttcattgtctatctcca 673
              ||||||||||||||||||||
Sbjct: 141383 attttcattgtctatctcca 141364
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>gb|AC102178.21| Mus musculus chromosome 7, clone RP24-70C24, complete sequence
          Length = 190370

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 542   gagaaaatgactttagatac 561
             ||||||||||||||||||||
Sbjct: 74652 gagaaaatgactttagatac 74633
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>gb|AF124742.1|AF124742 Euprymna scolopes guanine nucleotide-binding protein (RACKI)
          mRNA, partial cds
          Length = 939

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 37 gggttacacaaatcgccacc 56
          ||||||||||||||||||||
Sbjct: 50 gggttacacaaatcgccacc 69
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>dbj|AP003304.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-104B12, complete
             sequences
          Length = 182218

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 384   gatggtgaggaatcaaaggc 403
             ||||||||||||||||||||
Sbjct: 62150 gatggtgaggaatcaaaggc 62169
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>emb|BX088719.6| Zebrafish DNA sequence from clone CH211-207H2 in linkage group 17,
              complete sequence
          Length = 205685

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 576    gcaccattgctcaagctctc 595
              ||||||||||||||||||||
Sbjct: 191454 gcaccattgctcaagctctc 191473
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>emb|AL954769.9| Zebrafish DNA sequence from clone CH211-262A21 in linkage group 7,
           complete sequence
          Length = 145555

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 184 ctggagcagcagagttcgca 203
           ||||||||||||||||||||
Sbjct: 790 ctggagcagcagagttcgca 809
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>gb|AC083895.21| Mus musculus strain C57BL/6J chromosome 16 clone rp23-294d8, complete
              sequence
          Length = 187658

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 178    ttaagtctggagcagcagag 197
              ||||||||||||||||||||
Sbjct: 153758 ttaagtctggagcagcagag 153739


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,250,907
Number of Sequences: 3902068
Number of extensions: 6250907
Number of successful extensions: 101519
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101382
Number of HSP's gapped (non-prelim): 136
length of query: 715
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 692
effective length of database: 17,143,297,704
effective search space: 11863162011168
effective search space used: 11863162011168
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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