ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags38c02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_186039.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1238 Score = 236 bits (119), Expect = 7e-59 Identities = 155/167 (92%) Strand = Plus / Minus Query: 435 tcacgttgtttctttgcagctgttatctccaatgttaatttctgttccctgatatgagtc 494 |||||||||||||||||||||| ||||||||| ||| |||||| ||||||||||||||| Sbjct: 644 tcacgttgtttctttgcagctgctatctccaagtttagtttctgctccctgatatgagtc 585 Query: 495 ttctcagctatttcaccaaccagatcatcccatttgaacttcctgagatactttatgttc 554 |||||||||||||||||||| ||||||||||||||||| ||| ||||||| ||||||||| Sbjct: 584 ttctcagctatttcaccaacaagatcatcccatttgaatttcttgagatattttatgttc 525 Query: 555 cagatgtcataataaaatgacgacctcttcttcccacctatttgttc 601 || |||||||||||||||| |||||||||||||||||||||||||| Sbjct: 524 caaatgtcataataaaatggagacctcttcttcccacctatttgttc 478
>dbj|AK103399.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033127O12, full insert sequence Length = 1238 Score = 236 bits (119), Expect = 7e-59 Identities = 155/167 (92%) Strand = Plus / Minus Query: 435 tcacgttgtttctttgcagctgttatctccaatgttaatttctgttccctgatatgagtc 494 |||||||||||||||||||||| ||||||||| ||| |||||| ||||||||||||||| Sbjct: 644 tcacgttgtttctttgcagctgctatctccaagtttagtttctgctccctgatatgagtc 585 Query: 495 ttctcagctatttcaccaaccagatcatcccatttgaacttcctgagatactttatgttc 554 |||||||||||||||||||| ||||||||||||||||| ||| ||||||| ||||||||| Sbjct: 584 ttctcagctatttcaccaacaagatcatcccatttgaatttcttgagatattttatgttc 525 Query: 555 cagatgtcataataaaatgacgacctcttcttcccacctatttgttc 601 || |||||||||||||||| |||||||||||||||||||||||||| Sbjct: 524 caaatgtcataataaaatggagacctcttcttcccacctatttgttc 478
>gb|BT017786.1| Zea mays clone EL01N0504A09.c mRNA sequence Length = 1044 Score = 194 bits (98), Expect = 2e-46 Identities = 152/170 (89%) Strand = Plus / Minus Query: 432 tgatcacgttgtttctttgcagctgttatctccaatgttaatttctgttccctgatatga 491 ||||| |||||||||||||| |||| ||||||||| ||||||||||| || ||||||||| Sbjct: 314 tgatcgcgttgtttctttgctgctgctatctccaaggttaatttctgctctctgatatga 255 Query: 492 gtcttctcagctatttcaccaaccagatcatcccatttgaacttcctgagatactttatg 551 || |||||||| |||||||||||||||||||||||||| ||||||||||| || || ||| Sbjct: 254 gttttctcagccatttcaccaaccagatcatcccatttaaacttcctgaggtatttaatg 195 Query: 552 ttccagatgtcataataaaatgacgacctcttcttcccacctatttgttc 601 ||||| |||||||||||||||| || |||||||| || ||||||||||| Sbjct: 194 ttccaaatgtcataataaaatggagatctcttcttaccgcctatttgttc 145
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 129 bits (65), Expect = 1e-26 Identities = 86/93 (92%) Strand = Plus / Minus Query: 502 ctatttcaccaaccagatcatcccatttgaacttcctgagatactttatgttccagatgt 561 ||||||||||||| ||||||||||||||||| ||| ||||||| ||||||||||| |||| Sbjct: 27893410 ctatttcaccaacaagatcatcccatttgaatttcttgagatattttatgttccaaatgt 27893351 Query: 562 cataataaaatgacgacctcttcttcccaccta 594 |||||||||||| ||||||||||||||||||| Sbjct: 27893350 cataataaaatggagacctcttcttcccaccta 27893318 Score = 99.6 bits (50), Expect = 1e-17 Identities = 65/70 (92%) Strand = Plus / Minus Query: 435 tcacgttgtttctttgcagctgttatctccaatgttaatttctgttccctgatatgagtc 494 |||||||||||||||||||||| ||||||||| ||| |||||| ||||||||||||||| Sbjct: 27893569 tcacgttgtttctttgcagctgctatctccaagtttagtttctgctccctgatatgagtc 27893510 Query: 495 ttctcagcta 504 |||||||||| Sbjct: 27893509 ttctcagcta 27893500
>dbj|AP005452.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0453E03 Length = 159980 Score = 129 bits (65), Expect = 1e-26 Identities = 86/93 (92%) Strand = Plus / Minus Query: 502 ctatttcaccaaccagatcatcccatttgaacttcctgagatactttatgttccagatgt 561 ||||||||||||| ||||||||||||||||| ||| ||||||| ||||||||||| |||| Sbjct: 56768 ctatttcaccaacaagatcatcccatttgaatttcttgagatattttatgttccaaatgt 56709 Query: 562 cataataaaatgacgacctcttcttcccaccta 594 |||||||||||| ||||||||||||||||||| Sbjct: 56708 cataataaaatggagacctcttcttcccaccta 56676 Score = 99.6 bits (50), Expect = 1e-17 Identities = 65/70 (92%) Strand = Plus / Minus Query: 435 tcacgttgtttctttgcagctgttatctccaatgttaatttctgttccctgatatgagtc 494 |||||||||||||||||||||| ||||||||| ||| |||||| ||||||||||||||| Sbjct: 56927 tcacgttgtttctttgcagctgctatctccaagtttagtttctgctccctgatatgagtc 56868 Query: 495 ttctcagcta 504 |||||||||| Sbjct: 56867 ttctcagcta 56858
>gb|AC122886.3| Mus musculus BAC clone RP23-91G21 from 13, complete sequence Length = 206999 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 132 ggcagatggtgaagacagcaa 152 ||||||||||||||||||||| Sbjct: 5028 ggcagatggtgaagacagcaa 5008
>emb|AJ632302.1| Gallus gallus partial TLR7 gene for toll-like receptor 7 Length = 14867 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 332 accaacatcattggattcttttcct 356 ||||||||| ||||||||||||||| Sbjct: 7859 accaacatccttggattcttttcct 7835
>gb|AC087277.11| Homo sapiens chromosome 11, clone RP11-514F3, complete sequence Length = 196859 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 96 cattacaaaaaatgacagcctaatc 120 ||||||||| ||||||||||||||| Sbjct: 70409 cattacaaataatgacagcctaatc 70433
>gb|AC066613.7|AC066613 Homo sapiens chromosome 15 clone RP11-707P17 map 15q21.2, complete sequence Length = 169077 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 493 tcttctcagctatttcaccaaccag 517 |||||||||||||||| |||||||| Sbjct: 32028 tcttctcagctatttctccaaccag 32004
>gb|AC020891.8|AC020891 Homo sapiens chromosome 15 clone RP11-108K3 map 15q21, complete sequence Length = 144714 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 493 tcttctcagctatttcaccaaccag 517 |||||||||||||||| |||||||| Sbjct: 130782 tcttctcagctatttctccaaccag 130758
>gb|AC153016.2| Mus musculus BAC clone RP23-182K18 from 13, complete sequence Length = 224420 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 132 ggcagatggtgaagacagcaa 152 ||||||||||||||||||||| Sbjct: 207997 ggcagatggtgaagacagcaa 207977
>gb|AC154867.1| Medicago truncatula chromosome 2 BAC clone mte1-6j20, complete sequence Length = 109340 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 agaacattcagtttgcaatg 184 |||||||||||||||||||| Sbjct: 22907 agaacattcagtttgcaatg 22888
>gb|AC161178.16| Mus musculus chromosome 1, clone RP23-9F16, complete sequence Length = 216182 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 518 atcatcccatttgaacttcc 537 |||||||||||||||||||| Sbjct: 142912 atcatcccatttgaacttcc 142893
>ref|XM_632073.1| Dictyostelium discoideum hypothetical protein (DDB0187506), partial mRNA Length = 774 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 463 ccaatgttaatttctgttcc 482 |||||||||||||||||||| Sbjct: 295 ccaatgttaatttctgttcc 314
>gb|AY313848.1| Vaccinia virus strain Acambis clone 3, complete genome Length = 197418 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 549 atgttccagatgtcataata 568 |||||||||||||||||||| Sbjct: 36790 atgttccagatgtcataata 36809
>gb|AY313847.1| Vaccinia virus strain Acambis clone 2000, complete genome Length = 199234 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 549 atgttccagatgtcataata 568 |||||||||||||||||||| Sbjct: 36735 atgttccagatgtcataata 36754
>gb|AC092020.3| Homo sapiens BAC clone RP11-390D12 from 7, complete sequence Length = 5404 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 cagtcttttgcttctttttt 377 |||||||||||||||||||| Sbjct: 3186 cagtcttttgcttctttttt 3167
>gb|AC113198.15| Mus musculus chromosome 14, clone RP23-248E15, complete sequence Length = 236220 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 439 gttgtttctttgcagctgtt 458 |||||||||||||||||||| Sbjct: 16972 gttgtttctttgcagctgtt 16991
>gb|AC146512.2| Pan troglodytes BAC clone RP43-16E21 from 7, complete sequence Length = 178648 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 cagtcttttgcttctttttt 377 |||||||||||||||||||| Sbjct: 30264 cagtcttttgcttctttttt 30245
>gb|AC102573.10| Mus musculus chromosome 1, clone RP23-237L7, complete sequence Length = 185146 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 gcagatggtgaagacagcaa 152 |||||||||||||||||||| Sbjct: 96544 gcagatggtgaagacagcaa 96525
>gb|AC072028.14| Homo sapiens 3 BAC RP11-190C21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 186739 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 cagaagcaatacatatttgg 57 |||||||||||||||||||| Sbjct: 70894 cagaagcaatacatatttgg 70913
>gb|DQ377945.1| Vaccinia virus strain 3737, complete genome Length = 199377 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 549 atgttccagatgtcataata 568 |||||||||||||||||||| Sbjct: 39283 atgttccagatgtcataata 39302
>emb|BX666066.6| Zebrafish DNA sequence from clone CH211-135A19 in linkage group 7, complete sequence Length = 18360 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 gaatattttttgagagcttt 260 |||||||||||||||||||| Sbjct: 14215 gaatattttttgagagcttt 14196
>emb|Z82203.1|HS360E18 Human DNA sequence from clone RP3-360E18 on chromosome Xq12-13 Contains part of the OPHN1 gene for oligophrenin 1 and three CpG islands, complete sequence Length = 131903 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 cagtcttttgcttctttttt 377 |||||||||||||||||||| Sbjct: 90993 cagtcttttgcttctttttt 90974
>emb|AL603764.27| Human DNA sequence from clone RP11-481L19 on chromosome 10 Contains the 3' end of the PRSS11 gene for protease serine 11 (IGF binding) and the DMBT1 gene for deleted in malignant brain tumors 1, complete sequence Length = 191741 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 ggtggggcagatggtgaaga 146 |||||||||||||||||||| Sbjct: 15702 ggtggggcagatggtgaaga 15683
>emb|AL161417.17| Human DNA sequence from clone RP11-125A7 on chromosome 13, complete sequence Length = 157306 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 347 ttcttttccttcagtcttttgctt 370 ||||||| |||||||||||||||| Sbjct: 88184 ttcttttgcttcagtcttttgctt 88161
>gb|AC107933.6| Homo sapiens chromosome 8, clone RP11-959C6, complete sequence Length = 208341 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 395 tttctgtgtacgagacttttcagcatta 422 ||||||||||| ||||||||||| |||| Sbjct: 66649 tttctgtgtaccagacttttcagaatta 66676
>emb|BX510352.17| Zebrafish DNA sequence from clone DKEY-96J11 in linkage group 18, complete sequence Length = 152387 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 aatattttttgagagctttg 261 |||||||||||||||||||| Sbjct: 63301 aatattttttgagagctttg 63282
>gb|M35027.1|VACCG Vaccinia virus Copenhagen, complete genome Length = 191737 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 549 atgttccagatgtcataata 568 |||||||||||||||||||| Sbjct: 36915 atgttccagatgtcataata 36934
>gb|AY243312.1| Vaccinia virus WR, complete genome Length = 194711 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 549 atgttccagatgtcataata 568 |||||||||||||||||||| Sbjct: 33844 atgttccagatgtcataata 33863
>gb|AY766183.1| Vaccinia virus strain ACAM1000, partial sequence Length = 201404 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 549 atgttccagatgtcataata 568 |||||||||||||||||||| Sbjct: 163024 atgttccagatgtcataata 163005
>gb|AC083817.19|AC083817 Mus musculus 1 BAC RP23-470G12 (Roswell Park Cancer Institute Mouse BAC) complete sequence Length = 204950 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 gcagatggtgaagacagcaa 152 |||||||||||||||||||| Sbjct: 193579 gcagatggtgaagacagcaa 193598
>gb|AF334029.1|AF334029 Daucus carota S-adenosyl-methionine decarboxylase (SAMDC) mRNA, complete cds Length = 1761 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 tagaacattcagtttgcaat 183 |||||||||||||||||||| Sbjct: 149 tagaacattcagtttgcaat 130
>gb|AC023157.38| Homo sapiens 12 BAC RP11-467L13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 122351 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 468 gttaatttctgttccctgat 487 |||||||||||||||||||| Sbjct: 96965 gttaatttctgttccctgat 96946
>gb|AC155246.1| Mus musculus BAC clone RP24-303C15 from 14, complete sequence Length = 151983 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 439 gttgtttctttgcagctgtt 458 |||||||||||||||||||| Sbjct: 139383 gttgtttctttgcagctgtt 139402
>gb|AF157623.1|AF157623 Homo sapiens HTRA serine protease (PRSS11) gene, complete cds Length = 79597 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 ggtggggcagatggtgaaga 146 |||||||||||||||||||| Sbjct: 75113 ggtggggcagatggtgaaga 75094
>emb|CR956421.19| Pig DNA sequence from clone PigE-225A14 on chromosome 6, complete sequence Length = 127959 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 tctcaccaacatcattggat 347 |||||||||||||||||||| Sbjct: 12717 tctcaccaacatcattggat 12736
>dbj|AP002849.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1495A5 Length = 205990 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 395 tttctgtgtacgagacttttcagcatta 422 ||||||||||| ||||||||||| |||| Sbjct: 20249 tttctgtgtaccagacttttcagaatta 20222
>gb|AE017226.1| Treponema denticola ATCC 35405, complete genome Length = 2843201 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 ttttgagagctttgcctttt 267 |||||||||||||||||||| Sbjct: 2776682 ttttgagagctttgcctttt 2776663
>emb|CT005243.3| Pan troglodytes chromosome X clone RP43-008I08 map Xq28, complete sequence Length = 180222 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 cagtcttttgcttctttttt 377 |||||||||||||||||||| Sbjct: 55695 cagtcttttgcttctttttt 55714
>gb|M19117.1|VACRRSSA Vaccinia virus ribonucleotide reductase, small subunit, complete cds Length = 1290 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 549 atgttccagatgtcataata 568 |||||||||||||||||||| Sbjct: 233 atgttccagatgtcataata 214
>emb|AL772326.5| Mouse DNA sequence from clone RP23-267E14 on chromosome 4, complete sequence Length = 165398 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 ttcttttccttcagtctttt 366 |||||||||||||||||||| Sbjct: 103377 ttcttttccttcagtctttt 103396
>gb|M34368.1|VACFGENE Vaccinia virus F1L, F2L, F3L, F4L, F5L, F6L, F7L, F8L, and F9L mRNAs, complete cds Length = 6185 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 549 atgttccagatgtcataata 568 |||||||||||||||||||| Sbjct: 2747 atgttccagatgtcataata 2728
>gb|M57774.1|VACCH8 Chinese vaccinia virus F1 segment DNA fragment Length = 1145 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 549 atgttccagatgtcataata 568 |||||||||||||||||||| Sbjct: 148 atgttccagatgtcataata 129
>dbj|AP004712.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1819F10, complete sequence Length = 149677 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 395 tttctgtgtacgagacttttcagcatta 422 ||||||||||| ||||||||||| |||| Sbjct: 121292 tttctgtgtaccagacttttcagaatta 121265 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,951,952 Number of Sequences: 3902068 Number of extensions: 6951952 Number of successful extensions: 132205 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 132039 Number of HSP's gapped (non-prelim): 166 length of query: 601 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 578 effective length of database: 17,143,297,704 effective search space: 9908826072912 effective search space used: 9908826072912 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
