ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags37n02 |
|---|---|
| Clone Library Name | barley_pub |
>COPZ1_BOVIN (P35604) Coatomer subunit zeta-1 (Zeta-1 coat protein) (Zeta-1 COP)| Length = 177 Score = 105 bits (261), Expect = 2e-22 Identities = 65/172 (37%), Positives = 94/172 (54%) Frame = -1 Query: 656 SVKNILLLDSEGKRVAVKYFSDDWPNNASRLTFEKSIFTKTLKTNARSEAEITLLDGNIV 477 +VK IL+LD++G R+ KY+ D +P+ + FEK+IF KT +T ++EI LL+G V Sbjct: 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRT----DSEIALLEGLTV 67 Query: 476 VYKFVQDLHFFVTAGDDENELIIANVLQGFADSVGLLLRGDVEKRTAXXXXXXXXXXXXX 297 VYK DL+F+V ENEL++ VL DS+ +LR +VEKR Sbjct: 68 VYKSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 127 Query: 296 XXXXXXXXETDANTIAGKVATNAADGSVPFSEQTISQALATAREHFARSLLK 141 E+D + +VA D VP +EQT+SQ L +A+E SLL+ Sbjct: 128 IVDGGVILESDPQQVVHRVALRGED--VPLTEQTVSQVLQSAKEQIKWSLLR 177
>COPZ1_PONPY (Q5R5F2) Coatomer subunit zeta-1 (Zeta-1 coat protein) (Zeta-1 COP)| Length = 177 Score = 104 bits (259), Expect = 3e-22 Identities = 65/172 (37%), Positives = 94/172 (54%) Frame = -1 Query: 656 SVKNILLLDSEGKRVAVKYFSDDWPNNASRLTFEKSIFTKTLKTNARSEAEITLLDGNIV 477 +VK IL+LD++G R+ KY+ D +P+ + FEK+IF KT +T ++EI LL+G V Sbjct: 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRT----DSEIALLEGLTV 67 Query: 476 VYKFVQDLHFFVTAGDDENELIIANVLQGFADSVGLLLRGDVEKRTAXXXXXXXXXXXXX 297 VYK DL+F+V ENEL++ VL DS+ +LR +VEKR Sbjct: 68 VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 127 Query: 296 XXXXXXXXETDANTIAGKVATNAADGSVPFSEQTISQALATAREHFARSLLK 141 E+D + +VA D VP +EQT+SQ L +A+E SLL+ Sbjct: 128 IVDGGVILESDPQQVVHRVALRGED--VPLTEQTVSQVLQSAKEQIKWSLLR 177
>COPZ1_MOUSE (P61924) Coatomer subunit zeta-1 (Zeta-1 coat protein) (Zeta-1 COP)| Length = 177 Score = 104 bits (259), Expect = 3e-22 Identities = 65/172 (37%), Positives = 94/172 (54%) Frame = -1 Query: 656 SVKNILLLDSEGKRVAVKYFSDDWPNNASRLTFEKSIFTKTLKTNARSEAEITLLDGNIV 477 +VK IL+LD++G R+ KY+ D +P+ + FEK+IF KT +T ++EI LL+G V Sbjct: 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRT----DSEIALLEGLTV 67 Query: 476 VYKFVQDLHFFVTAGDDENELIIANVLQGFADSVGLLLRGDVEKRTAXXXXXXXXXXXXX 297 VYK DL+F+V ENEL++ VL DS+ +LR +VEKR Sbjct: 68 VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 127 Query: 296 XXXXXXXXETDANTIAGKVATNAADGSVPFSEQTISQALATAREHFARSLLK 141 E+D + +VA D VP +EQT+SQ L +A+E SLL+ Sbjct: 128 IVDGGVILESDPQQVVHRVALRGED--VPLTEQTVSQVLQSAKEQIKWSLLR 177
>COPZ1_HUMAN (P61923) Coatomer subunit zeta-1 (Zeta-1 coat protein) (Zeta-1 COP)| Length = 177 Score = 104 bits (259), Expect = 3e-22 Identities = 65/172 (37%), Positives = 94/172 (54%) Frame = -1 Query: 656 SVKNILLLDSEGKRVAVKYFSDDWPNNASRLTFEKSIFTKTLKTNARSEAEITLLDGNIV 477 +VK IL+LD++G R+ KY+ D +P+ + FEK+IF KT +T ++EI LL+G V Sbjct: 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRT----DSEIALLEGLTV 67 Query: 476 VYKFVQDLHFFVTAGDDENELIIANVLQGFADSVGLLLRGDVEKRTAXXXXXXXXXXXXX 297 VYK DL+F+V ENEL++ VL DS+ +LR +VEKR Sbjct: 68 VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 127 Query: 296 XXXXXXXXETDANTIAGKVATNAADGSVPFSEQTISQALATAREHFARSLLK 141 E+D + +VA D VP +EQT+SQ L +A+E SLL+ Sbjct: 128 IVDGGVILESDPQQVVHRVALRGED--VPLTEQTVSQVLQSAKEQIKWSLLR 177
>COPZ2_MOUSE (Q9JHH9) Coatomer subunit zeta-2 (Zeta-2 coat protein) (Zeta-2 COP)| Length = 205 Score = 93.6 bits (231), Expect = 5e-19 Identities = 55/172 (31%), Positives = 91/172 (52%) Frame = -1 Query: 656 SVKNILLLDSEGKRVAVKYFSDDWPNNASRLTFEKSIFTKTLKTNARSEAEITLLDGNIV 477 ++K + +LD++G+R+ KY+ D +P+ ++ FEK++F KT +R+E+EI L G + Sbjct: 40 TIKAVFILDNDGRRLLAKYYDDTFPSVKEQMVFEKNVFNKT----SRTESEIAFLGGMTI 95 Query: 476 VYKFVQDLHFFVTAGDDENELIIANVLQGFADSVGLLLRGDVEKRTAXXXXXXXXXXXXX 297 VYK D+ +V ENEL++ +VL DS+ +LR +VEKR Sbjct: 96 VYKSSIDIFLYVVGSSSENELMLMSVLACLFDSLSHILRKNVEKRWLLENMDGAFLVLDE 155 Query: 296 XXXXXXXXETDANTIAGKVATNAADGSVPFSEQTISQALATAREHFARSLLK 141 E+D + KV D + +EQ+++Q L +A+E SLLK Sbjct: 156 TVDGGVILESDPQQVIQKVNFRTDDSGL--TEQSVAQVLQSAKEQIKWSLLK 205
>COPZ2_HUMAN (Q9P299) Coatomer subunit zeta-2 (Zeta-2 coat protein) (Zeta-2 COP)| Length = 210 Score = 93.6 bits (231), Expect = 5e-19 Identities = 56/172 (32%), Positives = 92/172 (53%) Frame = -1 Query: 656 SVKNILLLDSEGKRVAVKYFSDDWPNNASRLTFEKSIFTKTLKTNARSEAEITLLDGNIV 477 ++K + +LD++G+R+ KY+ D +P+ ++ FEK++F KT +R+E+EI G + Sbjct: 45 TIKAVFILDNDGRRLLAKYYDDTFPSMKEQMVFEKNVFNKT----SRTESEIAFFGGMTI 100 Query: 476 VYKFVQDLHFFVTAGDDENELIIANVLQGFADSVGLLLRGDVEKRTAXXXXXXXXXXXXX 297 VYK DL +V ENEL++ +VL +S+ +LR +VEKR Sbjct: 101 VYKNSIDLFLYVVGSSYENELMLMSVLTCLFESLNHMLRKNVEKRWLLENMDGAFLVLDE 160 Query: 296 XXXXXXXXETDANTIAGKVATNAADGSVPFSEQTISQALATAREHFARSLLK 141 E+D + KV A DG + +EQ+++Q L +A+E SLLK Sbjct: 161 IVDGGVILESDPQQVIQKVNFRADDGGL--TEQSVAQVLQSAKEQIKWSLLK 210
>COPZ_CAEEL (O17901) Probable coatomer subunit zeta (Zeta-coat protein)| (Zeta-COP) Length = 184 Score = 82.0 bits (201), Expect = 1e-15 Identities = 58/177 (32%), Positives = 89/177 (50%), Gaps = 5/177 (2%) Frame = -1 Query: 656 SVKNILLLDSEGKRVAVKYFS-DDWPNNASRLTFEKSIFTKTLKTNARSEAEITLLDGNI 480 S+K I++LD +G RV KY+ + + FEKS+F+KT + + A+I LLDG Sbjct: 13 SIKGIVILDQDGNRVLAKYYDRTTFGTVKEQKAFEKSLFSKTSRNTS---ADILLLDGVT 69 Query: 479 VVYKFVQDLHFFVTAGDDENELIIANVLQGFADSVGLLLRGDVEKRTAXXXXXXXXXXXX 300 +Y+ DL+F+V ENEL + L D+V ++LR +VEK+ Sbjct: 70 CLYRSNVDLYFYVLGSTRENELFLDATLTCLYDAVSVVLRKNVEKKALIDSMDTIMLIID 129 Query: 299 XXXXXXXXXETDANTIAGKVATNAADGSVPFSEQTISQA----LATAREHFARSLLK 141 ETDA + + A + + V FS+Q++SQ + +A E F SLLK Sbjct: 130 EICDEGIIMETDAQAVVQRTALKSDE--VSFSDQSVSQIGFSFMKSANEQFKWSLLK 184
>COPZ_SCHPO (O74891) Probable coatomer subunit zeta (Zeta-coat protein)| (Zeta-COP) Length = 190 Score = 63.9 bits (154), Expect = 4e-10 Identities = 50/185 (27%), Positives = 78/185 (42%), Gaps = 13/185 (7%) Frame = -1 Query: 656 SVKNILLLDSEGKRVAVKYFSDD---------WPNNASRLTFEKSIFTKTLKTNARSEAE 504 +V L+LDS GKR+ KY++ + + TFEK +F KT KT + + Sbjct: 7 AVNAFLILDSSGKRIFTKYYAPPHLKEGEGGVFNSVKEEKTFEKGLFEKTWKT----QND 62 Query: 503 ITLLDGNIVVYKFVQDLHFFVTAGDDENELIIANVLQGFADSVGLLLRGDVEKRTAXXXX 324 I DG +VV V D+ F++ G +ENE+++ L+ D++ LL + +KRT Sbjct: 63 ILTYDGKLVVMLTVMDVIFYIVGGMEENEVMLYECLRSIRDALELLFKYVPDKRTLLENY 122 Query: 323 XXXXXXXXXXXXXXXXXETDANTIAGKVATNAADGS----VPFSEQTISQALATAREHFA 156 ET+ IA +V + F E + ARE Sbjct: 123 DQLVIVVDETIDDGVILETEPALIAARVTKGPVSEAQAIVSDFKEMGFMNSFQKAREKIT 182 Query: 155 RSLLK 141 +LK Sbjct: 183 ERILK 187
>COPZ_YEAST (P53600) Coatomer subunit zeta (Zeta-coat protein) (Zeta-COP)| Length = 189 Score = 57.4 bits (137), Expect = 4e-08 Identities = 37/150 (24%), Positives = 74/150 (49%), Gaps = 10/150 (6%) Frame = -1 Query: 656 SVKNILLLDSEGKRVAVKYF-----SDD-----WPNNASRLTFEKSIFTKTLKTNARSEA 507 +V+ +L+LD +G+R+ KY+ SD+ + + + FEK ++ KT K ++ Sbjct: 8 TVQAVLILDQQGERIYAKYYQPPHRSDEGHQLLFNSVKKQKEFEKQLYRKTHK----QDS 63 Query: 506 EITLLDGNIVVYKFVQDLHFFVTAGDDENELIIANVLQGFADSVGLLLRGDVEKRTAXXX 327 EI + + ++V+YK D+ ++ A +ENE+++ ++ L+L ++K+ Sbjct: 64 EILIFEDHLVLYKEYIDITIYLVASLEENEIVLQQGFSAIRGALDLILNSGMDKKNIQEN 123 Query: 326 XXXXXXXXXXXXXXXXXXETDANTIAGKVA 237 ETD+NTIA +V+ Sbjct: 124 YDMVLLAIDETIDNGVILETDSNTIASRVS 153
>EPSB1_RALSO (P58593) Putative tyrosine-protein kinase epsB (EC 2.7.10.2) (EPS I| polysaccharide export protein epsB) Length = 751 Score = 31.2 bits (69), Expect = 2.9 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%) Frame = -1 Query: 593 DDWPNNASRLTFE-KSIFTKTLKTNARSEAEITLLDGNIVVYKFVQDLHFFVTA 435 +D PN+A L + S+F +KT+A +E EI L +VV K V +LH ++TA Sbjct: 65 EDNPNSAKSLLGDVSSLFD--VKTDANAEIEI--LRSRMVVGKAVDNLHLYITA 114
>EPSB2_RALSO (Q45409) Putative tyrosine-protein kinase epsB (EC 2.7.10.2) (EPS I| polysaccharide export protein epsB) Length = 750 Score = 31.2 bits (69), Expect = 2.9 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%) Frame = -1 Query: 593 DDWPNNASRLTFE-KSIFTKTLKTNARSEAEITLLDGNIVVYKFVQDLHFFVTA 435 +D PN+A L + S+F +KT+A +E EI L +VV K V +LH ++TA Sbjct: 65 EDNPNSAKSLLGDVSSLFD--VKTDANAEIEI--LRSRMVVGKAVDNLHLYITA 114
>13S2_FAGES (O23880) 13S globulin seed storage protein 2 precursor| (Legumin-like protein 2) [Contains: 13S globulin seed storage protein 2 acidic chain; 13S globulin seed storage protein 2 basic chain] Length = 504 Score = 29.6 bits (65), Expect = 8.4 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 18/73 (24%) Frame = -1 Query: 503 ITLLDGNIVVYKFVQDLHFFVTAG------------------DDENELIIANVLQGFADS 378 +TLLD N + +++ F AG DD+ L+ AN+L GF D Sbjct: 191 VTLLDANSYHKQLDENVRSFFLAGQSQRETREEGSDRQSRESDDDEALLGANILSGFQDE 250 Query: 377 VGLLLRGDVEKRT 339 + L DV++ T Sbjct: 251 ILHELFRDVDRET 263
>F13A_RAT (O08619) Coagulation factor XIII A chain precursor (EC 2.3.2.13)| (Coagulation factor XIIIa) (Protein-glutamine gamma-glutamyltransferase A chain) (Transglutaminase A chain) Length = 731 Score = 29.6 bits (65), Expect = 8.4 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Frame = -1 Query: 572 SRLTFEKSIFTKTLKTNARSEAEITLLDGNIVVYKFVQDL-HFFVTAGDDENELIIA 405 S+ F+ F TL + + E+ + G + Y Q L HFFVTA +E +++A Sbjct: 564 SKKEFKTESFEVTLDPLSLEKKEVLIRAGEYMSYLLEQGLLHFFVTARINETRVVLA 620
>F13A_MOUSE (Q8BH61) Coagulation factor XIII A chain precursor (EC 2.3.2.13)| (Coagulation factor XIIIa) (Protein-glutamine gamma-glutamyltransferase A chain) (Transglutaminase A chain) Length = 731 Score = 29.6 bits (65), Expect = 8.4 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Frame = -1 Query: 572 SRLTFEKSIFTKTLKTNARSEAEITLLDGNIVVYKFVQD-LHFFVTAGDDENELIIA 405 S+ F+K F +TL + + E+ + G + + Q LHFFVTA +E+ ++A Sbjct: 564 SKKEFKKESFEETLDPFSSKKKEVLVRAGEYMSHLLEQGFLHFFVTARINESRDVLA 620 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,442,529 Number of Sequences: 219361 Number of extensions: 1619009 Number of successful extensions: 4772 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4594 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4758 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6370891296 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
