ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags37n01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X78877.1|HVACXPII3 Hordeum vulgare L. (Alexis) mRNA for seri... 1189 0.0
2ref|NM_185973.1| Oryza sativa (japonica cultivar-group), mRNA 276 8e-71
3gb|AY224473.1| Oryza sativa (japonica cultivar-group) isolate 29... 272 1e-69
4gb|AY108013.1| Zea mays PCO089815 mRNA sequence 168 1e-38
5dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 163 8e-37
6dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic D... 163 8e-37
7gb|AY106653.1| Zea mays PCO089814 mRNA sequence 82 2e-12
8gb|AC115809.8| Mus musculus chromosome 8, clone RP23-416L3, comp... 46 0.13
9gb|AF091216.1|AF091216 Mus musculus Wrn protein (Wrn) gene, comp... 46 0.13
10emb|CR701755.2|CNS0G4FB Tetraodon nigroviridis full-length cDNA 44 0.53
11gb|AC146525.2| Oryza sativa (japonica cultivar-group) chromosome... 42 2.1
12emb|CR695172.2|CNS0FZCG Tetraodon nigroviridis full-length cDNA 42 2.1
13emb|CR684465.2|CNS0FR31 Tetraodon nigroviridis full-length cDNA 42 2.1
14emb|CR682040.2|CNS0FP7O Tetraodon nigroviridis full-length cDNA 42 2.1
15emb|CR683612.2|CNS0FQFC Tetraodon nigroviridis full-length cDNA 42 2.1
16emb|CR682280.2|CNS0FPEC Tetraodon nigroviridis full-length cDNA 42 2.1
17emb|AL158827.27| Human DNA sequence from clone RP11-330M2 on chr... 42 2.1
18emb|AL512496.1|SPAC589 S.pombe chromosome I cosmid c589 42 2.1
19ref|NM_001019474.1| Schizosaccharomyces pombe 972h- hypothetical... 42 2.1
20dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
21gb|AC021200.7| Homo sapiens BAC clone RP11-62B4 from 4, complete... 42 2.1
22gb|AC104770.10| Homo sapiens chromosome 17, clone RP11-960B9, co... 42 2.1
23gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.1
24gb|AC079843.3| Oryza sativa (japonica cultivar-group) chromosome... 40 8.2
25gb|AY490796.1| Helianthus annuus clone Ha-NTIR11-3prime CC-NBS-L... 40 8.2
26ref|XM_421074.1| PREDICTED: Gallus gallus similar to Liprin-alph... 40 8.2
27gb|AY567487.2| Human Coronavirus NL63, complete genome 40 8.2
28gb|AC146867.3| Xenopus tropicalis clone CH216-119B15, complete s... 40 8.2
29gb|AY490793.1| Helianthus annuus clone Ha-NTIR11g CC-NBS-LRR gen... 40 8.2
30gb|AC123547.15| Medicago truncatula clone mth2-26n6, complete se... 40 8.2
31emb|AL500527.19| Human DNA sequence from clone RP11-302K17 on ch... 40 8.2
32emb|AL162720.8| Human DNA sequence from clone RP1-132N8 on chrom... 40 8.2
33emb|AL035251.11|HS705O1 Human DNA sequence from clone RP4-705O1 ... 40 8.2
34gb|CP000087.1| Rickettsia bellii RML369-C, complete genome 40 8.2
35gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.2
36emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete ... 40 8.2
37emb|BX682549.8| Zebrafish DNA sequence from clone CH211-193L17 i... 40 8.2
38dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
39gb|AY697420.1| Human coronavirus NL63 strain Amsterdam 1 spike p... 40 8.2
40emb|BX933745.1| Gallus gallus finished cDNA, clone ChEST1005k12 40 8.2
41gb|AY902242.1| Human coronavirus NL63 isolate SWE 10614/2004 spi... 40 8.2
42gb|AC117516.5| Homo sapiens 3 BAC RP11-845C18 (Roswell Park Canc... 40 8.2
43gb|AC073409.8| Homo sapiens BAC clone RP11-17O9 from 2, complete... 40 8.2
44emb|AL672110.10| Mouse DNA sequence from clone RP23-338D24 on ch... 40 8.2
45gb|AF117582.1|AF117582 Manduca sexta clone pMsmaC22 calcyphosine... 40 8.2
46emb|BX530723.8| Zebrafish DNA sequence from clone DKEYP-119B4 in... 40 8.2
47gb|AY758301.1| Human coronavirus NL63 strain BE03-64880 spike pr... 40 8.2
48gb|AY758298.1| Human coronavirus NL63 strain BE03-21596 spike pr... 40 8.2
49gb|AY758297.1| Human coronavirus NL63 strain BE03-1153 spike pro... 40 8.2
50gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 8.2
51emb|AL671215.4| Mouse DNA sequence from clone RP23-277C18 on chr... 40 8.2
52emb|AL672023.7| Mouse DNA sequence from clone RP23-339O19 on chr... 40 8.2 
>emb|X78877.1|HVACXPII3 Hordeum vulgare L. (Alexis) mRNA for serine carboxypeptidase II-3
          Length = 1979

 Score = 1189 bits (600), Expect = 0.0
 Identities = 603/604 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    ggcgcagcatcctttggaggcaccagtattgcaacatgccattttggcatagatgttcat 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1903 ggcgcagcatcctttggaggcaccagtattgcaacatgccattttggcatagatgttcat 1844

                                                                        
Query: 61   acttaacaaattacaccatacactttcctatctatatgaaagcatttgctgacctgcagt 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1843 acttaacaaattacaccatacactttcctatctatatgaaagcatttgctgacctgcagt 1784

                                                                        
Query: 121  tacatggtctgcggagtgcatgggttgatgatgggtttctgtatctaactttacttgatt 180
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1783 tacatggcctgcggagtgcatgggttgatgatgggtttctgtatctaactttacttgatt 1724

                                                                        
Query: 181  ttgcttgtttcttgtactgaatcaaatgatacaacctgtgaaacctgctggtgtactatc 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1723 ttgcttgtttcttgtactgaatcaaatgatacaacctgtgaaacctgctggtgtactatc 1664

                                                                        
Query: 241  ttttagtgtaaaaccttcttttcttttgctaatcctgttcgcattctttgcagtcaggga 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1663 ttttagtgtaaaaccttcttttcttttgctaatcctgttcgcattctttgcagtcaggga 1604

                                                                        
Query: 301  gcgctttgcctgcgaggaaattctggacaagcacaagcgctcgccgcggctggtagctgg 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1603 gcgctttgcctgcgaggaaattctggacaagcacaagcgctcgccgcggctggtagctgg 1544

                                                                        
Query: 361  ggacctcatggcctgctcctctaacagttaccaagctgaggtcgcccttgtactgcacaa 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1543 ggacctcatggcctgctcctctaacagttaccaagctgaggtcgcccttgtactgcacaa 1484

                                                                        
Query: 421  tgtatccacccacctctccggcacccttggtgctgctgaaccatggcctccattttgccg 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1483 tgtatccacccacctctccggcacccttggtgctgctgaaccatggcctccattttgccg 1424

                                                                        
Query: 481  ccacagggagctggagctggttgacagagagtctactggaagtgacgggcactctcccat 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1423 ccacagggagctggagctggttgacagagagtctactggaagtgacgggcactctcccat 1364

                                                                        
Query: 541  cagtgtctccactgtaaacccagacccggatgctgttcttcatcagctcctggataatag 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1363 cagtgtctccactgtaaacccagacccggatgctgttcttcatcagctcctggataatag 1304

                
Query: 601  gcag 604
            ||||
Sbjct: 1303 gcag 1300
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>ref|NM_185973.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1575

 Score =  276 bits (139), Expect = 8e-71
 Identities = 268/311 (86%)
 Strand = Plus / Minus

                                                                        
Query: 294  tcagggagcgctttgcctgcgaggaaattctggacaagcacaagcgctcgccgcggctgg 353
            ||||| |||| ||||||| | ||||||| |||||||||||||||||||||| | ||||||
Sbjct: 1550 tcaggtagcgttttgccttcaaggaaatactggacaagcacaagcgctcgctgtggctgg 1491

                                                                        
Query: 354  tagctggggacctcatggcctgctcctctaacagttaccaagctgaggtcgcccttgtac 413
            ||||||||||| ||||||||||||||||| || ||||| | ||||||||  |||||||||
Sbjct: 1490 tagctggggacttcatggcctgctcctctcacggttacaaggctgaggttccccttgtac 1431

                                                                        
Query: 414  tgcacaatgtatccacccacctctccggcacccttggtgctgctgaaccatggcctccat 473
            ||||||||||||||||| || |||||  ||||||  ||| |||| |||||||| ||||||
Sbjct: 1430 tgcacaatgtatccaccaacgtctccaacaccctgagtgttgctaaaccatggtctccat 1371

                                                                        
Query: 474  tttgccgccacagggagctggagctggttgacagagagtctactggaagtgacgggcact 533
            || || || || || || | ||||||||||||||||  ||| ||||||||||| || |||
Sbjct: 1370 ttagcagcaactggaaggttgagctggttgacagagtatctgctggaagtgacaggtact 1311

                                                                        
Query: 534  ctcccatcagtgtctccactgtaaacccagacccggatgctgttcttcatcagctcctgg 593
            ||||||||||||||||||||||| |||||||| | |||| |||||||||  ||||||| |
Sbjct: 1310 ctcccatcagtgtctccactgtacacccagactctgatgttgttcttcaggagctccttg 1251

                       
Query: 594  ataataggcag 604
            ||||| |||||
Sbjct: 1250 ataatgggcag 1240
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>gb|AY224473.1| Oryza sativa (japonica cultivar-group) isolate 29039 serine
            carboxypepsidase mRNA, partial cds
          Length = 1338

 Score =  272 bits (137), Expect = 1e-69
 Identities = 267/311 (85%)
 Strand = Plus / Minus

                                                                        
Query: 294  tcagggagcgctttgcctgcgaggaaattctggacaagcacaagcgctcgccgcggctgg 353
            ||||| |||| ||||||| | ||||||| |||||||||||||||||||||| | ||||||
Sbjct: 1313 tcaggtagcgttttgccttcaaggaaatactggacaagcacaagcgctcgctgtggctgg 1254

                                                                        
Query: 354  tagctggggacctcatggcctgctcctctaacagttaccaagctgaggtcgcccttgtac 413
            ||||||||||| ||||||||||||||||| || ||||| | ||||||||  |||||||||
Sbjct: 1253 tagctggggacttcatggcctgctcctctcacggttacaaggctgaggttccccttgtac 1194

                                                                        
Query: 414  tgcacaatgtatccacccacctctccggcacccttggtgctgctgaaccatggcctccat 473
            ||||||||||||||||| || |||||  ||||||  ||| |||| |||||||| ||||||
Sbjct: 1193 tgcacaatgtatccaccaacgtctccaacaccctgagtgttgctaaaccatggtctccat 1134

                                                                        
Query: 474  tttgccgccacagggagctggagctggttgacagagagtctactggaagtgacgggcact 533
            || || || || || || | ||||||||||||||||  ||| ||||||||||| || |||
Sbjct: 1133 ttagcagcaactggaaggttgagctggttgacagagtatctgctggaagtgacaggtact 1074

                                                                        
Query: 534  ctcccatcagtgtctccactgtaaacccagacccggatgctgttcttcatcagctcctgg 593
            ||||||||||||||||||||||| |||||||| | |||| ||||||| |  ||||||| |
Sbjct: 1073 ctcccatcagtgtctccactgtacacccagactctgatgttgttcttmaggagctccttg 1014

                       
Query: 594  ataataggcag 604
            ||||| |||||
Sbjct: 1013 ataatgggcag 1003
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>gb|AY108013.1| Zea mays PCO089815 mRNA sequence
          Length = 453

 Score =  168 bits (85), Expect = 1e-38
 Identities = 148/169 (87%)
 Strand = Plus / Minus

                                                                       
Query: 404 gcccttgtactgcacaatgtatccacccacctctccggcacccttggtgctgctgaacca 463
           ||||||||||||||| | ||| || |||||||||||||| ||||  ||||||||||||||
Sbjct: 183 gcccttgtactgcacgacgtagccgcccacctctccggcgccctgagtgctgctgaacca 124

                                                                       
Query: 464 tggcctccattttgccgccacagggagctggagctggttgacagagagtctactggaagt 523
           || |||||||||||| || || ||||||||||||||||| || |||   || ||||||||
Sbjct: 123 tgccctccattttgcggcaactgggagctggagctggttcacggagtacctgctggaagt 64

                                                            
Query: 524 gacgggcactctcccatcagtgtctccactgtaaacccagacccggatg 572
           ||| |||||||||||||| |||||||||||||| |||||||||| ||||
Sbjct: 63  gaccggcactctcccatcggtgtctccactgtacacccagaccctgatg 15



 Score =  101 bits (51), Expect = 3e-18
 Identities = 99/115 (86%)
 Strand = Plus / Minus

                                                                       
Query: 287 tttgcagtcagggagcgctttgcctgcgaggaaattctggacaagcacaagcgctcgccg 346
           ||||||| |||| |||| ||||||||| ||||||  |||||||||||| |||||||||| 
Sbjct: 312 tttgcagccaggaagcgttttgcctgcaaggaaaccctggacaagcacgagcgctcgcct 253

                                                                  
Query: 347 cggctggtagctggggacctcatggcctgctcctctaacagttaccaagctgagg 401
            |||||||||||||| ||||| ||||| |||||||| || || |||| |||||||
Sbjct: 252 tggctggtagctgggcacctcgtggccggctcctctgacggtgaccaggctgagg 198
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  163 bits (82), Expect = 8e-37
 Identities = 130/146 (89%)
 Strand = Plus / Plus

                                                                            
Query: 294      tcagggagcgctttgcctgcgaggaaattctggacaagcacaagcgctcgccgcggctgg 353
                ||||| |||| ||||||| | ||||||| |||||||||||||||||||||| | ||||||
Sbjct: 27585606 tcaggtagcgttttgccttcaaggaaatactggacaagcacaagcgctcgctgtggctgg 27585665

                                                                            
Query: 354      tagctggggacctcatggcctgctcctctaacagttaccaagctgaggtcgcccttgtac 413
                ||||||||||| ||||||||||||||||| || ||||| | ||||||||  |||||||||
Sbjct: 27585666 tagctggggacttcatggcctgctcctctcacggttacaaggctgaggttccccttgtac 27585725

                                          
Query: 414      tgcacaatgtatccacccacctctcc 439
                ||||||||||||||||| || |||||
Sbjct: 27585726 tgcacaatgtatccaccaacgtctcc 27585751



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 87/101 (86%)
 Strand = Plus / Plus

                                                                            
Query: 454      tgctgaaccatggcctccattttgccgccacagggagctggagctggttgacagagagtc 513
                |||| |||||||| |||||||| || || || || || | ||||||||||||||||  ||
Sbjct: 27585994 tgctaaaccatggtctccatttagcagcaactggaaggttgagctggttgacagagtatc 27586053

                                                         
Query: 514      tactggaagtgacgggcactctcccatcagtgtctccactg 554
                | ||||||||||| || ||||||||||||||||||||||||
Sbjct: 27586054 tgctggaagtgacaggtactctcccatcagtgtctccactg 27586094
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>dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0047B07
          Length = 157797

 Score =  163 bits (82), Expect = 8e-37
 Identities = 130/146 (89%)
 Strand = Plus / Plus

                                                                         
Query: 294   tcagggagcgctttgcctgcgaggaaattctggacaagcacaagcgctcgccgcggctgg 353
             ||||| |||| ||||||| | ||||||| |||||||||||||||||||||| | ||||||
Sbjct: 42599 tcaggtagcgttttgccttcaaggaaatactggacaagcacaagcgctcgctgtggctgg 42658

                                                                         
Query: 354   tagctggggacctcatggcctgctcctctaacagttaccaagctgaggtcgcccttgtac 413
             ||||||||||| ||||||||||||||||| || ||||| | ||||||||  |||||||||
Sbjct: 42659 tagctggggacttcatggcctgctcctctcacggttacaaggctgaggttccccttgtac 42718

                                       
Query: 414   tgcacaatgtatccacccacctctcc 439
             ||||||||||||||||| || |||||
Sbjct: 42719 tgcacaatgtatccaccaacgtctcc 42744



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 87/101 (86%)
 Strand = Plus / Plus

                                                                         
Query: 454   tgctgaaccatggcctccattttgccgccacagggagctggagctggttgacagagagtc 513
             |||| |||||||| |||||||| || || || || || | ||||||||||||||||  ||
Sbjct: 42987 tgctaaaccatggtctccatttagcagcaactggaaggttgagctggttgacagagtatc 43046

                                                      
Query: 514   tactggaagtgacgggcactctcccatcagtgtctccactg 554
             | ||||||||||| || ||||||||||||||||||||||||
Sbjct: 43047 tgctggaagtgacaggtactctcccatcagtgtctccactg 43087
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>gb|AY106653.1| Zea mays PCO089814 mRNA sequence
          Length = 618

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 75/87 (86%)
 Strand = Plus / Minus

                                                                       
Query: 486 gggagctggagctggttgacagagagtctactggaagtgacgggcactctcccatcagtg 545
           ||||||||||||||||| || |||   || ||||||||||| |||||| ||||||| |||
Sbjct: 547 gggagctggagctggttcacggagtacctgctggaagtgaccggcactntcccatcggtg 488

                                      
Query: 546 tctccactgtaaacccagacccggatg 572
           |||||| |||| |||||||||| ||||
Sbjct: 487 tctccantgtacacccagaccctgatg 461
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>gb|AC115809.8| Mus musculus chromosome 8, clone RP23-416L3, complete sequence
          Length = 193884

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 240    cttttagtgtaaaaccttctttt 262
              |||||||||||||||||||||||
Sbjct: 102292 cttttagtgtaaaaccttctttt 102270
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>gb|AF091216.1|AF091216 Mus musculus Wrn protein (Wrn) gene, complete cds
          Length = 97348

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 240  cttttagtgtaaaaccttctttt 262
            |||||||||||||||||||||||
Sbjct: 3759 cttttagtgtaaaaccttctttt 3737
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>emb|CR701755.2|CNS0G4FB Tetraodon nigroviridis full-length cDNA
          Length = 1449

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 361 ggacctcatggcctgctcctct 382
           ||||||||||||||||||||||
Sbjct: 116 ggacctcatggcctgctcctct 95
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>gb|AC146525.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0060D22 map near S6115, complete sequence
          Length = 139929

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 184   cttgtttcttgtactgaatca 204
             |||||||||||||||||||||
Sbjct: 27390 cttgtttcttgtactgaatca 27410
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>emb|CR695172.2|CNS0FZCG Tetraodon nigroviridis full-length cDNA
          Length = 1475

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 361 ggacctcatggcctgctcctc 381
           |||||||||||||||||||||
Sbjct: 94  ggacctcatggcctgctcctc 74
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>emb|CR684465.2|CNS0FR31 Tetraodon nigroviridis full-length cDNA
          Length = 1458

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 361 ggacctcatggcctgctcctc 381
           |||||||||||||||||||||
Sbjct: 95  ggacctcatggcctgctcctc 75
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>emb|CR682040.2|CNS0FP7O Tetraodon nigroviridis full-length cDNA
          Length = 1431

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 361 ggacctcatggcctgctcctc 381
           |||||||||||||||||||||
Sbjct: 93  ggacctcatggcctgctcctc 73
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>emb|CR683612.2|CNS0FQFC Tetraodon nigroviridis full-length cDNA
          Length = 1503

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 361 ggacctcatggcctgctcctc 381
           |||||||||||||||||||||
Sbjct: 125 ggacctcatggcctgctcctc 105
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>emb|CR682280.2|CNS0FPEC Tetraodon nigroviridis full-length cDNA
          Length = 1428

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 361 ggacctcatggcctgctcctc 381
           |||||||||||||||||||||
Sbjct: 94  ggacctcatggcctgctcctc 74
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>emb|AL158827.27| Human DNA sequence from clone RP11-330M2 on chromosome 9 Contains a
             pseudogene similar to part of a zinc finger protein, two
             novel pseudogenes, a novel gene similar to DKFZP434I1117,
             a novel pseudogene (FLJ23476), two novel gene, a novel
             gene similar to MGC12954 and four CpG islands, complete
             sequence
          Length = 186108

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 243   ttagtgtaaaaccttcttttc 263
             |||||||||||||||||||||
Sbjct: 20854 ttagtgtaaaaccttcttttc 20834
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>emb|AL512496.1|SPAC589 S.pombe chromosome I cosmid c589
          Length = 18342

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 247  tgtaaaaccttcttttctttt 267
            |||||||||||||||||||||
Sbjct: 3586 tgtaaaaccttcttttctttt 3606
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>ref|NM_001019474.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC589.02c),
            partial mRNA
          Length = 3672

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 247  tgtaaaaccttcttttctttt 267
            |||||||||||||||||||||
Sbjct: 1053 tgtaaaaccttcttttctttt 1033
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 184      cttgtttcttgtactgaatca 204
                |||||||||||||||||||||
Sbjct: 12348107 cttgtttcttgtactgaatca 12348087
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>gb|AC021200.7| Homo sapiens BAC clone RP11-62B4 from 4, complete sequence
          Length = 154690

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 249   taaaaccttcttttcttttgctaat 273
             |||||| ||||||||||||||||||
Sbjct: 31833 taaaactttcttttcttttgctaat 31857
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>gb|AC104770.10| Homo sapiens chromosome 17, clone RP11-960B9, complete sequence
          Length = 188574

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 419   aatgtatccacccacctctcc 439
             |||||||||||||||||||||
Sbjct: 42738 aatgtatccacccacctctcc 42718
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 184      cttgtttcttgtactgaatca 204
                |||||||||||||||||||||
Sbjct: 12427414 cttgtttcttgtactgaatca 12427394
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>gb|AC079843.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0013J21, complete sequence
          Length = 155290

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 174   cttgattttgcttgtttctt 193
             ||||||||||||||||||||
Sbjct: 69068 cttgattttgcttgtttctt 69049
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>gb|AY490796.1| Helianthus annuus clone Ha-NTIR11-3prime CC-NBS-LRR-like protein
           mRNA, partial cds
          Length = 2791

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 96  atgaaagcatttgctgacctgcag 119
           ||||| ||||||||||||||||||
Sbjct: 862 atgaaggcatttgctgacctgcag 885
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>ref|XM_421074.1| PREDICTED: Gallus gallus similar to Liprin-alpha 1 (Protein
           tyrosine phosphatase receptor type f
           polypeptide-interacting protein alpha 1)
           (PTPRF-interacting protein alpha 1) (LAR-interacting
           protein 1) (LIP.1) (LOC423147), mRNA
          Length = 4160

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 456 ctgaaccatggcctccattt 475
           ||||||||||||||||||||
Sbjct: 564 ctgaaccatggcctccattt 545
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>gb|AY567487.2| Human Coronavirus NL63, complete genome
          Length = 27553

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 167   aactttacttgattttgcttgttt 190
             |||||| |||||||||||||||||
Sbjct: 20476 aacttttcttgattttgcttgttt 20499
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>gb|AC146867.3| Xenopus tropicalis clone CH216-119B15, complete sequence
          Length = 157383

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 94    atatgaaagcatttgctgacctgcagttacat 125
             ||||||||||||||||||| || || ||||||
Sbjct: 83643 atatgaaagcatttgctgagctacaattacat 83674
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>gb|AY490793.1| Helianthus annuus clone Ha-NTIR11g CC-NBS-LRR gene, complete cds
          Length = 7362

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 96   atgaaagcatttgctgacctgcag 119
            ||||| ||||||||||||||||||
Sbjct: 3844 atgaaggcatttgctgacctgcag 3867
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>gb|AC123547.15| Medicago truncatula clone mth2-26n6, complete sequence
          Length = 111995

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 248   gtaaaaccttcttttctttt 267
             ||||||||||||||||||||
Sbjct: 74096 gtaaaaccttcttttctttt 74115
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>emb|AL500527.19| Human DNA sequence from clone RP11-302K17 on chromosome 10 Contains the
              gene for  Hermansky-Pudlak syndrome-6 protein (HPS6), two
              pseudogenes for  transcription elongation factor B (SIII),
              polypeptide 1, the LDB1 gene for LIM domain binding 1, a
              novel gene (KIAA0595), the NOLC1 gene for nucleolar and
              coiled-body phosphoprotein 1 and five CpG islands, complete
              sequence
          Length = 158434

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 30     tgcaacatgccattttggca 49
              ||||||||||||||||||||
Sbjct: 109835 tgcaacatgccattttggca 109854
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>emb|AL162720.8| Human DNA sequence from clone RP1-132N8 on chromosome 6 Contains a
             pseudogene of the likely ortholog of mouse suppressors of
             cytokine signalling 5 (SOCS5, CIS6, CISH6, KIAA0761),
             complete sequence
          Length = 57355

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 176   tgattttgcttgtttcttgt 195
             ||||||||||||||||||||
Sbjct: 28712 tgattttgcttgtttcttgt 28731
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>emb|AL035251.11|HS705O1 Human DNA sequence from clone RP4-705O1 on chromosome 20q11.2 Contains
             a novel gene, complete sequence
          Length = 161888

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 164   tctaactttacttgattttgcttg 187
             ||||||||||||||||| ||||||
Sbjct: 23159 tctaactttacttgattctgcttg 23182
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>gb|CP000087.1| Rickettsia bellii RML369-C, complete genome
          Length = 1522076

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 171    ttacttgattttgcttgttt 190
              ||||||||||||||||||||
Sbjct: 487174 ttacttgattttgcttgttt 487155
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>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
               Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 174     cttgattttgcttgtttctt 193
               ||||||||||||||||||||
Sbjct: 2090928 cttgattttgcttgtttctt 2090909
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>emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete genome; segment 25/29
          Length = 296500

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 575   gttcttcatcagctcctgga 594
             ||||||||||||||||||||
Sbjct: 75965 gttcttcatcagctcctgga 75946
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>emb|BX682549.8| Zebrafish DNA sequence from clone CH211-193L17 in linkage group 20,
            complete sequence
          Length = 151560

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 196  actgaatcaaatgatacaacctgt 219
            |||||| |||||||||||||||||
Sbjct: 7377 actgaaccaaatgatacaacctgt 7400
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 174     cttgattttgcttgtttctt 193
               ||||||||||||||||||||
Sbjct: 2090928 cttgattttgcttgtttctt 2090909
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>gb|AY697420.1| Human coronavirus NL63 strain Amsterdam 1 spike protein (S) mRNA,
           partial cds
          Length = 287

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 167 aactttacttgattttgcttgttt 190
           |||||| |||||||||||||||||
Sbjct: 73  aacttttcttgattttgcttgttt 96
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>emb|BX933745.1| Gallus gallus finished cDNA, clone ChEST1005k12
          Length = 1126

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 456 ctgaaccatggcctccattt 475
           ||||||||||||||||||||
Sbjct: 563 ctgaaccatggcctccattt 544
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>gb|AY902242.1| Human coronavirus NL63 isolate SWE 10614/2004 spike protein gene,
           partial cds
          Length = 586

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 167 aactttacttgattttgcttgttt 190
           |||||| |||||||||||||||||
Sbjct: 43  aacttttcttgattttgcttgttt 66
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>gb|AC117516.5| Homo sapiens 3 BAC RP11-845C18 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 172997

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 252   aaccttcttttcttttgcta 271
             ||||||||||||||||||||
Sbjct: 54614 aaccttcttttcttttgcta 54633
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>gb|AC073409.8| Homo sapiens BAC clone RP11-17O9 from 2, complete sequence
          Length = 180903

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 41     attttggcatagatgttcat 60
              ||||||||||||||||||||
Sbjct: 100998 attttggcatagatgttcat 100979
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>emb|AL672110.10| Mouse DNA sequence from clone RP23-338D24 on chromosome X, complete
             sequence
          Length = 167407

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    cattttggcatagatgttca 59
             ||||||||||||||||||||
Sbjct: 13712 cattttggcatagatgttca 13693
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>gb|AF117582.1|AF117582 Manduca sexta clone pMsmaC22 calcyphosine-like protein mRNA,
           complete cds
          Length = 916

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 572 gctgttcttcatcagctcct 591
           ||||||||||||||||||||
Sbjct: 146 gctgttcttcatcagctcct 127
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>emb|BX530723.8| Zebrafish DNA sequence from clone DKEYP-119B4 in linkage group 20,
             complete sequence
          Length = 119735

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 196   actgaatcaaatgatacaacctgt 219
             |||||| |||||||||||||||||
Sbjct: 93249 actgaaccaaatgatacaacctgt 93272
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>gb|AY758301.1| Human coronavirus NL63 strain BE03-64880 spike protein gene,
           partial cds
          Length = 614

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 167 aactttacttgattttgcttgttt 190
           |||||| |||||||||||||||||
Sbjct: 40  aacttttcttgattttgcttgttt 63
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>gb|AY758298.1| Human coronavirus NL63 strain BE03-21596 spike protein gene,
           partial cds
          Length = 614

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 167 aactttacttgattttgcttgttt 190
           |||||| |||||||||||||||||
Sbjct: 40  aacttttcttgattttgcttgttt 63
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>gb|AY758297.1| Human coronavirus NL63 strain BE03-1153 spike protein gene, partial
           cds
          Length = 614

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 167 aactttacttgattttgcttgttt 190
           |||||| |||||||||||||||||
Sbjct: 40  aacttttcttgattttgcttgttt 63
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 174     cttgattttgcttgtttctt 193
               ||||||||||||||||||||
Sbjct: 2090879 cttgattttgcttgtttctt 2090860
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>emb|AL671215.4| Mouse DNA sequence from clone RP23-277C18 on chromosome X, complete
              sequence
          Length = 182633

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 293    gtcagggagcgctttgcctg 312
              ||||||||||||||||||||
Sbjct: 175316 gtcagggagcgctttgcctg 175335
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>emb|AL672023.7| Mouse DNA sequence from clone RP23-339O19 on chromosome X, complete
             sequence
          Length = 160615

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 249   taaaaccttcttttcttttgctaa 272
             ||||| ||||||||||||||||||
Sbjct: 74487 taaaaacttcttttcttttgctaa 74510


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,634,267
Number of Sequences: 3902068
Number of extensions: 6634267
Number of successful extensions: 158557
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 158126
Number of HSP's gapped (non-prelim): 431
length of query: 604
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 581
effective length of database: 17,143,297,704
effective search space: 9960255966024
effective search space used: 9960255966024
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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