ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags38b19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 129 1e-26
2dbj|AP003770.3| Oryza sativa (japonica cultivar-group) genomic D... 129 1e-26
3dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic D... 129 1e-26
4dbj|AK120261.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 1e-26
5dbj|AK065599.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 1e-26
6emb|CR392328.18| Zebrafish DNA sequence from clone DKEYP-108C1 i... 46 0.14
7emb|BX510649.12| Zebrafish DNA sequence from clone CH211-158M24 ... 46 0.14
8gb|AC139344.17| Medicago truncatula clone mth2-34b22, complete s... 42 2.2
9emb|AL356272.14| Human DNA sequence from clone RP1-61P15 on chro... 42 2.2
10ref|NM_115190.1| Arabidopsis thaliana CYP71B31; heme binding / i... 40 8.9
11gb|BC085618.1| Mus musculus perlecan (heparan sulfate proteoglyc... 40 8.9
12ref|XM_582024.2| PREDICTED: Bos taurus perlecan (LOC444872), par... 40 8.9
13gb|AE017261.1| Picrophilus torridus DSM 9790, complete genome 40 8.9
14ref|XM_978879.1| PREDICTED: Mus musculus perlecan (heparan sulfa... 40 8.9
15gb|AY056284.1| Arabidopsis thaliana putative cytochrome P450 pro... 40 8.9
16emb|AL132958.1|ATT4D2 Arabidopsis thaliana DNA chromosome 3, BAC... 40 8.9
17gb|AC008733.9| Homo sapiens chromosome 19 clone CTD-2525J15, com... 40 8.9
18gb|AC009194.9| Homo sapiens, clone RP11-44B13, complete sequence 40 8.9
19emb|BX323857.16| Mouse DNA sequence from clone RP23-12C2 on chro... 40 8.9
20gb|BC036291.1| Mus musculus perlecan (heparan sulfate proteoglyc... 40 8.9
21gb|BC094353.1| Mus musculus perlecan (heparan sulfate proteoglyc... 40 8.9
22ref|XM_233606.3| PREDICTED: Rattus norvegicus perlecan (LOC31364... 40 8.9
23gb|AC114771.3| Homo sapiens BAC clone RP11-425I13 from 4, comple... 40 8.9
24emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA2... 40 8.9
25emb|AL132966.1|ATF4P12 Arabidopsis thaliana DNA chromosome 3, BA... 40 8.9
26emb|AL844901.8| Mouse DNA sequence from clone RP23-158F12 on chr... 40 8.9
27emb|AL844882.9| Mouse DNA sequence from clone RP23-360H15 on chr... 40 8.9
28gb|M77174.1|MUSPERPA Mouse perlecan mRNA, complete cds 40 8.9 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  129 bits (65), Expect = 1e-26
 Identities = 101/113 (89%)
 Strand = Plus / Plus

                                                                            
Query: 250      tttgtcatcgatgctgaccagaagggtttctttccctgctgtcggagaagagccagtgtg 309
                ||||||||||||||||||||||||| ||||||||||||||  | ||||||||||||||||
Sbjct: 28604917 tttgtcatcgatgctgaccagaaggatttctttccctgcttcctgagaagagccagtgtg 28604976

                                                                     
Query: 310      gtgcttttgttgcatttgaactgggggcaatgcttagtttgagatcgagatca 362
                |||||||||||||||   |||||||| ||||  |||||||||| || ||||||
Sbjct: 28604977 gtgcttttgttgcatgcaaactggggccaattgttagtttgaggtcaagatca 28605029
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>dbj|AP003770.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0550B04
          Length = 150131

 Score =  129 bits (65), Expect = 1e-26
 Identities = 101/113 (89%)
 Strand = Plus / Plus

                                                                         
Query: 250   tttgtcatcgatgctgaccagaagggtttctttccctgctgtcggagaagagccagtgtg 309
             ||||||||||||||||||||||||| ||||||||||||||  | ||||||||||||||||
Sbjct: 96395 tttgtcatcgatgctgaccagaaggatttctttccctgcttcctgagaagagccagtgtg 96454

                                                                  
Query: 310   gtgcttttgttgcatttgaactgggggcaatgcttagtttgagatcgagatca 362
             |||||||||||||||   |||||||| ||||  |||||||||| || ||||||
Sbjct: 96455 gtgcttttgttgcatgcaaactggggccaattgttagtttgaggtcaagatca 96507
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>dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0622F03
          Length = 170064

 Score =  129 bits (65), Expect = 1e-26
 Identities = 101/113 (89%)
 Strand = Plus / Plus

                                                                        
Query: 250  tttgtcatcgatgctgaccagaagggtttctttccctgctgtcggagaagagccagtgtg 309
            ||||||||||||||||||||||||| ||||||||||||||  | ||||||||||||||||
Sbjct: 5483 tttgtcatcgatgctgaccagaaggatttctttccctgcttcctgagaagagccagtgtg 5542

                                                                 
Query: 310  gtgcttttgttgcatttgaactgggggcaatgcttagtttgagatcgagatca 362
            |||||||||||||||   |||||||| ||||  |||||||||| || ||||||
Sbjct: 5543 gtgcttttgttgcatgcaaactggggccaattgttagtttgaggtcaagatca 5595
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>dbj|AK120261.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013046J02, full
            insert sequence
          Length = 1602

 Score =  129 bits (65), Expect = 1e-26
 Identities = 101/113 (89%)
 Strand = Plus / Minus

                                                                        
Query: 250  tttgtcatcgatgctgaccagaagggtttctttccctgctgtcggagaagagccagtgtg 309
            ||||||||||||||||||||||||| ||||||||||||||  | ||||||||||||||||
Sbjct: 1110 tttgtcatcgatgctgaccagaaggatttctttccctgcttcctgagaagagccagtgtg 1051

                                                                 
Query: 310  gtgcttttgttgcatttgaactgggggcaatgcttagtttgagatcgagatca 362
            |||||||||||||||   |||||||| ||||  |||||||||| || ||||||
Sbjct: 1050 gtgcttttgttgcatgcaaactggggccaattgttagtttgaggtcaagatca 998
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>dbj|AK065599.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013028E09, full
           insert sequence
          Length = 1374

 Score =  129 bits (65), Expect = 1e-26
 Identities = 101/113 (89%)
 Strand = Plus / Minus

                                                                       
Query: 250 tttgtcatcgatgctgaccagaagggtttctttccctgctgtcggagaagagccagtgtg 309
           ||||||||||||||||||||||||| ||||||||||||||  | ||||||||||||||||
Sbjct: 901 tttgtcatcgatgctgaccagaaggatttctttccctgcttcctgagaagagccagtgtg 842

                                                                
Query: 310 gtgcttttgttgcatttgaactgggggcaatgcttagtttgagatcgagatca 362
           |||||||||||||||   |||||||| ||||  |||||||||| || ||||||
Sbjct: 841 gtgcttttgttgcatgcaaactggggccaattgttagtttgaggtcaagatca 789
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>emb|CR392328.18| Zebrafish DNA sequence from clone DKEYP-108C1 in linkage group 5,
             complete sequence
          Length = 182066

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 617   tatcttctgttctgagttggaaa 639
             |||||||||||||||||||||||
Sbjct: 32184 tatcttctgttctgagttggaaa 32206
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>emb|BX510649.12| Zebrafish DNA sequence from clone CH211-158M24 in linkage group 5,
             complete sequence
          Length = 189844

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 617   tatcttctgttctgagttggaaa 639
             |||||||||||||||||||||||
Sbjct: 26621 tatcttctgttctgagttggaaa 26643
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>gb|AC139344.17| Medicago truncatula clone mth2-34b22, complete sequence
          Length = 129728

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 102    attactcatgtctgaggtattagtt 126
              |||||||||||||||| ||||||||
Sbjct: 103055 attactcatgtctgagatattagtt 103079
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>emb|AL356272.14| Human DNA sequence from clone RP1-61P15 on chromosome 1 Contains a
             eukaryotic translation elongation factor 1 alpha 1
             (EEF1A1) pseudogene, and a novel gene, complete sequence
          Length = 93179

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 500   aggtacttgcctagtatcagagtac 524
             |||||||||||| ||||||||||||
Sbjct: 27363 aggtacttgccttgtatcagagtac 27387
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>ref|NM_115190.1| Arabidopsis thaliana CYP71B31; heme binding / iron ion binding /
            monooxygenase/ oxygen binding AT3G53300 (CYP71B31) mRNA,
            complete cds
          Length = 1670

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 429  cttcttgaagtttcttcatc 448
            ||||||||||||||||||||
Sbjct: 1038 cttcttgaagtttcttcatc 1019
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>gb|BC085618.1| Mus musculus perlecan (heparan sulfate proteoglycan 2), mRNA (cDNA
            clone IMAGE:5133526), partial cds
          Length = 4315

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 345  agtttgagatcgagatcaccttcc 368
            ||||||||||| ||||||||||||
Sbjct: 1193 agtttgagatcaagatcaccttcc 1216
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>ref|XM_582024.2| PREDICTED: Bos taurus perlecan (LOC444872), partial mRNA
          Length = 13590

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 345   agtttgagatcgagatcaccttcc 368
             ||||||||||| ||||||||||||
Sbjct: 11684 agtttgagatcaagatcaccttcc 11707
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>gb|AE017261.1| Picrophilus torridus DSM 9790, complete genome
          Length = 1545895

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 408    ctttctggtcttctctcttggctt 431
              |||||||||||||| |||||||||
Sbjct: 550198 ctttctggtcttctttcttggctt 550221
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>ref|XM_978879.1| PREDICTED: Mus musculus perlecan (heparan sulfate proteoglycan 2)
             (Hspg2), mRNA
          Length = 14201

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 345   agtttgagatcgagatcaccttcc 368
             ||||||||||| ||||||||||||
Sbjct: 11113 agtttgagatcaagatcaccttcc 11136
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>gb|AY056284.1| Arabidopsis thaliana putative cytochrome P450 protein (At3g53300)
            mRNA, complete cds
          Length = 1686

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 429  cttcttgaagtttcttcatc 448
            ||||||||||||||||||||
Sbjct: 1038 cttcttgaagtttcttcatc 1019
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>emb|AL132958.1|ATT4D2 Arabidopsis thaliana DNA chromosome 3, BAC clone T4D2
          Length = 92611

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 429   cttcttgaagtttcttcatc 448
             ||||||||||||||||||||
Sbjct: 85793 cttcttgaagtttcttcatc 85774
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>gb|AC008733.9| Homo sapiens chromosome 19 clone CTD-2525J15, complete sequence
          Length = 189486

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 124   gttcagaccaaaatttgagg 143
             ||||||||||||||||||||
Sbjct: 65184 gttcagaccaaaatttgagg 65165
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>gb|AC009194.9| Homo sapiens, clone RP11-44B13, complete sequence
          Length = 179203

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 124    gttcagaccaaaatttgagg 143
              ||||||||||||||||||||
Sbjct: 143393 gttcagaccaaaatttgagg 143412
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>emb|BX323857.16| Mouse DNA sequence from clone RP23-12C2 on chromosome 4, complete
             sequence
          Length = 104942

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 345   agtttgagatcgagatcaccttcc 368
             ||||||||||| ||||||||||||
Sbjct: 98136 agtttgagatcaagatcaccttcc 98159
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>gb|BC036291.1| Mus musculus perlecan (heparan sulfate proteoglycan 2), mRNA (cDNA
           clone IMAGE:3497830), partial cds
          Length = 3870

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 345 agtttgagatcgagatcaccttcc 368
           ||||||||||| ||||||||||||
Sbjct: 717 agtttgagatcaagatcaccttcc 740
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>gb|BC094353.1| Mus musculus perlecan (heparan sulfate proteoglycan 2), mRNA (cDNA
           clone IMAGE:6810938), partial cds
          Length = 3182

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 345 agtttgagatcgagatcaccttcc 368
           ||||||||||| ||||||||||||
Sbjct: 396 agtttgagatcaagatcaccttcc 419
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>ref|XM_233606.3| PREDICTED: Rattus norvegicus perlecan (LOC313641), mRNA
          Length = 13848

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 345   agtttgagatcgagatcaccttcc 368
             ||||||||||| ||||||||||||
Sbjct: 11729 agtttgagatcaagatcaccttcc 11752
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>gb|AC114771.3| Homo sapiens BAC clone RP11-425I13 from 4, complete sequence
          Length = 121946

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 319   ttgcatttgaactgggggca 338
             ||||||||||||||||||||
Sbjct: 61405 ttgcatttgaactgggggca 61424
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>emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA252, complete genome
          Length = 2902619

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 308     tggtgcttttgttgcatttg 327
               ||||||||||||||||||||
Sbjct: 2549625 tggtgcttttgttgcatttg 2549606
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>emb|AL132966.1|ATF4P12 Arabidopsis thaliana DNA chromosome 3, BAC clone F4P12
          Length = 144628

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 429  cttcttgaagtttcttcatc 448
            ||||||||||||||||||||
Sbjct: 2395 cttcttgaagtttcttcatc 2376
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>emb|AL844901.8| Mouse DNA sequence from clone RP23-158F12 on chromosome 2, complete
             sequence
          Length = 200364

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 400   atttactgctttctggtcttctctcttg 427
             |||||||||||||| | |||||||||||
Sbjct: 62678 atttactgctttcttgccttctctcttg 62705
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>emb|AL844882.9| Mouse DNA sequence from clone RP23-360H15 on chromosome 2, complete
             sequence
          Length = 167978

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    caagtccttgtgcttgacag 72
             ||||||||||||||||||||
Sbjct: 57081 caagtccttgtgcttgacag 57062
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>gb|M77174.1|MUSPERPA Mouse perlecan mRNA, complete cds
          Length = 12667

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 345  agtttgagatcgagatcaccttcc 368
            ||||||||||| ||||||||||||
Sbjct: 9595 agtttgagatcaagatcaccttcc 9618


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,065,939
Number of Sequences: 3902068
Number of extensions: 6065939
Number of successful extensions: 113574
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 113460
Number of HSP's gapped (non-prelim): 114
length of query: 651
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 628
effective length of database: 17,143,297,704
effective search space: 10765990958112
effective search space used: 10765990958112
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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