| Clone Name | rbags38b16 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY723295.1| Oryza sativa (indica cultivar-group) rwp34 mRNA, partial cds Length = 659 Score = 107 bits (54), Expect = 4e-20 Identities = 141/170 (82%) Strand = Plus / Minus Query: 243 acggcgacgcacagcagcactaactgaacggaacaaaaaagcgaagctcgacttgctccg 302 ||||||| | ||||||| || ||||| ||||| ||||| |||||||||| ||||||| Sbjct: 347 acggcgatgaacagcagaacaaactggacggagcaaaacagcgaagctctgcttgctctt 288 Query: 303 gcctgcagcttcaggacctctgaagcgttcgacagctctttgcactgtgactctagcttc 362 |||||||||||||||| ||||||| | | || ||||||||||||| |||||||||| Sbjct: 287 gcctgcagcttcaggatttctgaagtcctagcaagatctttgcactgtgcctctagcttc 228 Query: 363 tcaaccatctcctctagcgtccttgctctattctcggtgcgccgaagctt 412 || ||||||||||||||| || ||| || ||||||||| |||| ||||| Sbjct: 227 tccaccatctcctctagcatcagtgccctgttctcggtgtgccgtagctt 178 Score = 60.0 bits (30), Expect = 9e-06 Identities = 81/98 (82%) Strand = Plus / Minus Query: 491 ccaagcttctgaagctcttttcaggatgaagcactggatctcggcctccatcttctccat 550 |||||||| || |||||| ||||||||||||| || |||| || ||||||||||||| Sbjct: 99 ccaagcttgcgatgctcttgtcaggatgaagcattgagtctctgcttccatcttctccag 40 Query: 551 gagcagttgatcaacttcagactgtagggacagcagct 588 || ||||||||| | ||||| || || |||||||||| Sbjct: 39 gaacagttgatccatatcagattgcagagacagcagct 2 Score = 40.1 bits (20), Expect = 8.3 Identities = 79/96 (82%), Gaps = 2/96 (2%) Strand = Plus / Minus Query: 69 tgagttgatgttacaaac-agaaaatttataaggccaccaaatgcctaatagattacatg 127 ||||||||||||||| || ||||| ||||| || ||| ||||| || || |||||| Sbjct: 517 tgagttgatgttacagacttgaaaaattatagggtgacc-aatgcttagtaaattacaat 459 Query: 128 aagtaacttttcaataatgtctacacagaggctcat 163 ||| |||||||||| |||| ||||||| |||||||| Sbjct: 458 aaggaacttttcaagaatgcctacacaaaggctcat 423
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 107 bits (54), Expect = 4e-20 Identities = 141/170 (82%) Strand = Plus / Plus Query: 243 acggcgacgcacagcagcactaactgaacggaacaaaaaagcgaagctcgacttgctccg 302 ||||||| | ||||||| || ||||| ||||| ||||| |||||||||| ||||||| Sbjct: 18416239 acggcgatgaacagcagaacaaactggacggagcaaaacagcgaagctctgcttgctctt 18416298 Query: 303 gcctgcagcttcaggacctctgaagcgttcgacagctctttgcactgtgactctagcttc 362 |||||||||||||||| ||||||| | | || ||||||||||||| |||||||||| Sbjct: 18416299 gcctgcagcttcaggatttctgaagtcctagcaagatctttgcactgtgcctctagcttc 18416358 Query: 363 tcaaccatctcctctagcgtccttgctctattctcggtgcgccgaagctt 412 || ||||||||||||||| || ||| || ||||||||| |||| ||||| Sbjct: 18416359 tccaccatctcctctagcatcagtgccctgttctcggtgtgccgtagctt 18416408 Score = 63.9 bits (32), Expect = 6e-07 Identities = 92/112 (82%) Strand = Plus / Plus Query: 491 ccaagcttctgaagctcttttcaggatgaagcactggatctcggcctccatcttctccat 550 |||||||| || |||||| ||||||||||||| || |||| || ||||||||||||| Sbjct: 18416487 ccaagcttgcgatgctcttgtcaggatgaagcattgagtctctgcttccatcttctccag 18416546 Query: 551 gagcagttgatcaacttcagactgtagggacagcagcttgctattgtataga 602 || ||||||||| | ||||| || || |||||||||| | ||||| ||||| Sbjct: 18416547 gaacagttgatccatatcagattgcagagacagcagctcggtattgcataga 18416598 Score = 40.1 bits (20), Expect = 8.3 Identities = 79/96 (82%), Gaps = 2/96 (2%) Strand = Plus / Plus Query: 69 tgagttgatgttacaaac-agaaaatttataaggccaccaaatgcctaatagattacatg 127 ||||||||||||||| || ||||| ||||| || ||| ||||| || || |||||| Sbjct: 18416069 tgagttgatgttacagacttgaaaaattatagggtgacc-aatgcttagtaaattacaat 18416127 Query: 128 aagtaacttttcaataatgtctacacagaggctcat 163 ||| |||||||||| |||| ||||||| |||||||| Sbjct: 18416128 aaggaacttttcaagaatgcctacacaaaggctcat 18416163
>dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0463G11 Length = 154188 Score = 107 bits (54), Expect = 4e-20 Identities = 141/170 (82%) Strand = Plus / Plus Query: 243 acggcgacgcacagcagcactaactgaacggaacaaaaaagcgaagctcgacttgctccg 302 ||||||| | ||||||| || ||||| ||||| ||||| |||||||||| ||||||| Sbjct: 130975 acggcgatgaacagcagaacaaactggacggagcaaaacagcgaagctctgcttgctctt 131034 Query: 303 gcctgcagcttcaggacctctgaagcgttcgacagctctttgcactgtgactctagcttc 362 |||||||||||||||| ||||||| | | || ||||||||||||| |||||||||| Sbjct: 131035 gcctgcagcttcaggatttctgaagtcctagcaagatctttgcactgtgcctctagcttc 131094 Query: 363 tcaaccatctcctctagcgtccttgctctattctcggtgcgccgaagctt 412 || ||||||||||||||| || ||| || ||||||||| |||| ||||| Sbjct: 131095 tccaccatctcctctagcatcagtgccctgttctcggtgtgccgtagctt 131144 Score = 63.9 bits (32), Expect = 6e-07 Identities = 92/112 (82%) Strand = Plus / Plus Query: 491 ccaagcttctgaagctcttttcaggatgaagcactggatctcggcctccatcttctccat 550 |||||||| || |||||| ||||||||||||| || |||| || ||||||||||||| Sbjct: 131223 ccaagcttgcgatgctcttgtcaggatgaagcattgagtctctgcttccatcttctccag 131282 Query: 551 gagcagttgatcaacttcagactgtagggacagcagcttgctattgtataga 602 || ||||||||| | ||||| || || |||||||||| | ||||| ||||| Sbjct: 131283 gaacagttgatccatatcagattgcagagacagcagctcggtattgcataga 131334 Score = 40.1 bits (20), Expect = 8.3 Identities = 79/96 (82%), Gaps = 2/96 (2%) Strand = Plus / Plus Query: 69 tgagttgatgttacaaac-agaaaatttataaggccaccaaatgcctaatagattacatg 127 ||||||||||||||| || ||||| ||||| || ||| ||||| || || |||||| Sbjct: 130805 tgagttgatgttacagacttgaaaaattatagggtgacc-aatgcttagtaaattacaat 130863 Query: 128 aagtaacttttcaataatgtctacacagaggctcat 163 ||| |||||||||| |||| ||||||| |||||||| Sbjct: 130864 aaggaacttttcaagaatgcctacacaaaggctcat 130899
>dbj|AP005392.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0463D04 Length = 145828 Score = 107 bits (54), Expect = 4e-20 Identities = 141/170 (82%) Strand = Plus / Plus Query: 243 acggcgacgcacagcagcactaactgaacggaacaaaaaagcgaagctcgacttgctccg 302 ||||||| | ||||||| || ||||| ||||| ||||| |||||||||| ||||||| Sbjct: 78113 acggcgatgaacagcagaacaaactggacggagcaaaacagcgaagctctgcttgctctt 78172 Query: 303 gcctgcagcttcaggacctctgaagcgttcgacagctctttgcactgtgactctagcttc 362 |||||||||||||||| ||||||| | | || ||||||||||||| |||||||||| Sbjct: 78173 gcctgcagcttcaggatttctgaagtcctagcaagatctttgcactgtgcctctagcttc 78232 Query: 363 tcaaccatctcctctagcgtccttgctctattctcggtgcgccgaagctt 412 || ||||||||||||||| || ||| || ||||||||| |||| ||||| Sbjct: 78233 tccaccatctcctctagcatcagtgccctgttctcggtgtgccgtagctt 78282 Score = 63.9 bits (32), Expect = 6e-07 Identities = 92/112 (82%) Strand = Plus / Plus Query: 491 ccaagcttctgaagctcttttcaggatgaagcactggatctcggcctccatcttctccat 550 |||||||| || |||||| ||||||||||||| || |||| || ||||||||||||| Sbjct: 78361 ccaagcttgcgatgctcttgtcaggatgaagcattgagtctctgcttccatcttctccag 78420 Query: 551 gagcagttgatcaacttcagactgtagggacagcagcttgctattgtataga 602 || ||||||||| | ||||| || || |||||||||| | ||||| ||||| Sbjct: 78421 gaacagttgatccatatcagattgcagagacagcagctcggtattgcataga 78472 Score = 40.1 bits (20), Expect = 8.3 Identities = 79/96 (82%), Gaps = 2/96 (2%) Strand = Plus / Plus Query: 69 tgagttgatgttacaaac-agaaaatttataaggccaccaaatgcctaatagattacatg 127 ||||||||||||||| || ||||| ||||| || ||| ||||| || || |||||| Sbjct: 77943 tgagttgatgttacagacttgaaaaattatagggtgacc-aatgcttagtaaattacaat 78001 Query: 128 aagtaacttttcaataatgtctacacagaggctcat 163 ||| |||||||||| |||| ||||||| |||||||| Sbjct: 78002 aaggaacttttcaagaatgcctacacaaaggctcat 78037
>gb|AY110280.1| Zea mays CL37545_1 mRNA sequence Length = 1061 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 502 aagctcttttcaggatgaagcactggatctcggcctccatcttctccatgagcagttgat 561 |||||||| | ||||| |||||||| ||||| || ||||||||||||| || ||| | | Sbjct: 456 aagctcttgtaaggataaagcactgaatctctgcttccatcttctccaggaacagccggt 515 Query: 562 caacttcagactgtagggacagc 584 | || |||||||||||||||||| Sbjct: 516 ctacatcagactgtagggacagc 538
>gb|AC116312.2| Homo sapiens chromosome 5 clone RP11-44B19, complete sequence Length = 166538 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 499 ctgaagctcttttcaggatgaagcac 524 |||||||||| ||||||||||||||| Sbjct: 156369 ctgaagctctgttcaggatgaagcac 156344
>gb|AC011334.5| Homo sapiens chromosome 5 clone CTC-235N17, complete sequence Length = 134413 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Plus Query: 499 ctgaagctcttttcaggatgaagcac 524 |||||||||| ||||||||||||||| Sbjct: 60704 ctgaagctctgttcaggatgaagcac 60729
>ref|XM_511572.1| PREDICTED: Pan troglodytes similar to pleckstrin homology domain containing, family M (with RUN domain) member 1; adapter protein 162 (LOC454754), mRNA Length = 2371 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 tccggcctgcagcttcaggac 319 ||||||||||||||||||||| Sbjct: 2089 tccggcctgcagcttcaggac 2069
>ref|NM_014798.1| Homo sapiens pleckstrin homology domain containing, family M (with RUN domain) member 1 (PLEKHM1), mRNA Length = 5277 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 tccggcctgcagcttcaggac 319 ||||||||||||||||||||| Sbjct: 2414 tccggcctgcagcttcaggac 2394
>ref|NM_010518.2| Mus musculus insulin-like growth factor binding protein 5 (Igfbp5), mRNA Length = 5854 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 agagaagagagaaacagcaag 22 ||||||||||||||||||||| Sbjct: 1865 agagaagagagaaacagcaag 1885
>gb|BC064361.1| Homo sapiens pleckstrin homology domain containing, family M (with RUN domain) member 1, mRNA (cDNA clone MGC:70928 IMAGE:5535600), complete cds Length = 5277 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 tccggcctgcagcttcaggac 319 ||||||||||||||||||||| Sbjct: 2414 tccggcctgcagcttcaggac 2394
>gb|BC029321.1| Mus musculus insulin-like growth factor binding protein 5, mRNA (cDNA clone IMAGE:3968195) Length = 4615 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 agagaagagagaaacagcaag 22 ||||||||||||||||||||| Sbjct: 699 agagaagagagaaacagcaag 719
>gb|AC103810.5| Homo sapiens chromosome 17, clone RP11-927P21, complete sequence Length = 203192 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 tccggcctgcagcttcaggac 319 ||||||||||||||||||||| Sbjct: 144731 tccggcctgcagcttcaggac 144711
>gb|AC121590.2| Mus musculus BAC clone RP23-281L22 from 2, complete sequence Length = 167364 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 69 tgagttgatgttacaaacaga 89 ||||||||||||||||||||| Sbjct: 10570 tgagttgatgttacaaacaga 10590
>gb|BC054812.1| Mus musculus insulin-like growth factor binding protein 5, mRNA (cDNA clone MGC:65658 IMAGE:6841070), complete cds Length = 4301 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 agagaagagagaaacagcaag 22 ||||||||||||||||||||| Sbjct: 1131 agagaagagagaaacagcaag 1151
>gb|BC026805.1| Mus musculus cDNA clone IMAGE:3979276, **** WARNING: chimeric clone **** Length = 5464 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 agagaagagagaaacagcaag 22 ||||||||||||||||||||| Sbjct: 1305 agagaagagagaaacagcaag 1325
>gb|BC041324.1| Homo sapiens cDNA clone IMAGE:5492395 Length = 4323 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 tccggcctgcagcttcaggac 319 ||||||||||||||||||||| Sbjct: 1819 tccggcctgcagcttcaggac 1799
>gb|BC053848.1| Homo sapiens pleckstrin homology domain containing, family M (with RUN domain) member 1, mRNA (cDNA clone IMAGE:5725595), containing frame-shift errors Length = 3350 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 tccggcctgcagcttcaggac 319 ||||||||||||||||||||| Sbjct: 2014 tccggcctgcagcttcaggac 1994
>gb|AC115870.18| Mus musculus chromosome 1, clone RP24-339L17, complete sequence Length = 186963 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 agagaagagagaaacagcaag 22 ||||||||||||||||||||| Sbjct: 56883 agagaagagagaaacagcaag 56863
>gb|U02025.1|AH005856S4 Mus musculus insulin-like growth factor binding protein 5 gene, exon 4 Length = 1926 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 agagaagagagaaacagcaag 22 ||||||||||||||||||||| Sbjct: 583 agagaagagagaaacagcaag 603
>emb|AL833315.1|HSM804628 Homo sapiens mRNA; cDNA DKFZp313K107 (from clone DKFZp313K107) Length = 5018 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 tccggcctgcagcttcaggac 319 ||||||||||||||||||||| Sbjct: 1586 tccggcctgcagcttcaggac 1566
>dbj|AK142108.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length enriched library, clone:D230038K06 product:insulin-like growth factor binding protein 5, full insert sequence Length = 2173 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 agagaagagagaaacagcaag 22 ||||||||||||||||||||| Sbjct: 1885 agagaagagagaaacagcaag 1905
>ref|XM_940040.1| PREDICTED: Homo sapiens similar to pleckstrin homology domain containing, family M (with RUN domain) member 1; adapter protein 162, transcript variant 19 (LOC440456), mRNA Length = 2029 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 tccggcctgcagcttcaggac 319 ||||||||||||||||||||| Sbjct: 729 tccggcctgcagcttcaggac 709
>ref|XM_935201.1| PREDICTED: Homo sapiens similar to pleckstrin homology domain containing, family M (with RUN domain) member 1; adapter protein 162, transcript variant 18 (LOC440456), mRNA Length = 4976 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 tccggcctgcagcttcaggac 319 ||||||||||||||||||||| Sbjct: 1580 tccggcctgcagcttcaggac 1560
>ref|XM_935200.1| PREDICTED: Homo sapiens similar to pleckstrin homology domain containing, family M (with RUN domain) member 1; adapter protein 162, transcript variant 17 (LOC440456), mRNA Length = 3330 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 tccggcctgcagcttcaggac 319 ||||||||||||||||||||| Sbjct: 2030 tccggcctgcagcttcaggac 2010
>ref|XM_935198.1| PREDICTED: Homo sapiens similar to pleckstrin homology domain containing, family M (with RUN domain) member 1; adapter protein 162, transcript variant 16 (LOC440456), mRNA Length = 3308 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 tccggcctgcagcttcaggac 319 ||||||||||||||||||||| Sbjct: 2008 tccggcctgcagcttcaggac 1988
>ref|XM_935188.1| PREDICTED: Homo sapiens similar to pleckstrin homology domain containing, family M (with RUN domain) member 1; adapter protein 162, transcript variant 6 (LOC440456), mRNA Length = 3727 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 tccggcctgcagcttcaggac 319 ||||||||||||||||||||| Sbjct: 2427 tccggcctgcagcttcaggac 2407
>ref|XM_930513.1| PREDICTED: Homo sapiens similar to pleckstrin homology domain containing, family M (with RUN domain) member 1; adapter protein 162, transcript variant 2 (LOC440456), mRNA Length = 4502 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 tccggcctgcagcttcaggac 319 ||||||||||||||||||||| Sbjct: 1813 tccggcctgcagcttcaggac 1793
>ref|XM_935186.1| PREDICTED: Homo sapiens similar to pleckstrin homology domain containing, family M (with RUN domain) member 1; adapter protein 162, transcript variant 4 (LOC440456), mRNA Length = 2378 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 tccggcctgcagcttcaggac 319 ||||||||||||||||||||| Sbjct: 1749 tccggcctgcagcttcaggac 1729
>ref|XM_935185.1| PREDICTED: Homo sapiens similar to pleckstrin homology domain containing, family M (with RUN domain) member 1; adapter protein 162, transcript variant 3 (LOC440456), mRNA Length = 2153 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 tccggcctgcagcttcaggac 319 ||||||||||||||||||||| Sbjct: 853 tccggcctgcagcttcaggac 833
>ref|XM_496237.2| PREDICTED: Homo sapiens similar to pleckstrin homology domain containing, family M (with RUN domain) member 1; adapter protein 162, transcript variant 1 (LOC440456), mRNA Length = 1826 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 tccggcctgcagcttcaggac 319 ||||||||||||||||||||| Sbjct: 1197 tccggcctgcagcttcaggac 1177
>dbj|AK161584.1| Mus musculus adult male pituitary gland cDNA, RIKEN full-length enriched library, clone:5330432P04 product:insulin-like growth factor binding protein 5, full insert sequence Length = 4584 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 agagaagagagaaacagcaag 22 ||||||||||||||||||||| Sbjct: 674 agagaagagagaaacagcaag 694
>gb|BC039192.1| Mus musculus insulin-like growth factor binding protein 5, mRNA (cDNA clone IMAGE:4013169) Length = 4220 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 agagaagagagaaacagcaag 22 ||||||||||||||||||||| Sbjct: 45 agagaagagagaaacagcaag 65
>gb|AC091132.16| Homo sapiens chromosome 17, clone RP11-798G7, complete sequence Length = 207611 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 tccggcctgcagcttcaggac 319 ||||||||||||||||||||| Sbjct: 120147 tccggcctgcagcttcaggac 120127
>gb|AC016240.23| Homo sapiens chromosome 8, clone RP11-27N21, complete sequence Length = 167578 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 24 agatttgtgaataagtacagt 44 ||||||||||||||||||||| Sbjct: 152312 agatttgtgaataagtacagt 152292
>dbj|AB088474.1| Acanthogobius flavimanus Vg-320 mRNA for vitellogenin, complete cds Length = 3993 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 501 gaagctcttttcaggatgaag 521 ||||||||||||||||||||| Sbjct: 1967 gaagctcttttcaggatgaag 1947
>dbj|AK025379.1| Homo sapiens cDNA: FLJ21726 fis, clone COLF1088 Length = 1859 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 tccggcctgcagcttcaggac 319 ||||||||||||||||||||| Sbjct: 1200 tccggcctgcagcttcaggac 1180
>gb|BC057447.1| Mus musculus insulin-like growth factor binding protein 5, mRNA (cDNA clone MGC:65274 IMAGE:2648602), complete cds Length = 2192 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 agagaagagagaaacagcaag 22 ||||||||||||||||||||| Sbjct: 1865 agagaagagagaaacagcaag 1885
>emb|AL389948.1|IR2005410 Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 2005410 Length = 2414 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 tccggcctgcagcttcaggac 319 ||||||||||||||||||||| Sbjct: 1751 tccggcctgcagcttcaggac 1731
>dbj|AB002354.2| Homo sapiens mRNA for KIAA0356 protein, partial cds Length = 5248 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 tccggcctgcagcttcaggac 319 ||||||||||||||||||||| Sbjct: 2403 tccggcctgcagcttcaggac 2383
>gb|L12447.1|MUSIGFBP5A Mus musculus insulin-like growth factor binding protein 5 (IGFBP5) mRNA, complete cds Length = 5561 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 agagaagagagaaacagcaag 22 ||||||||||||||||||||| Sbjct: 1526 agagaagagagaaacagcaag 1546
>gb|AC003663.1|AC003663 Homo sapiens chromosome 17, clone HCIT87G17, complete sequence Length = 132070 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 tccggcctgcagcttcaggac 319 ||||||||||||||||||||| Sbjct: 24233 tccggcctgcagcttcaggac 24213
>emb|AL732404.7| Mouse DNA sequence from clone RP23-177D21 on chromosome 2, complete sequence Length = 220275 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 69 tgagttgatgttacaaacaga 89 ||||||||||||||||||||| Sbjct: 174281 tgagttgatgttacaaacaga 174301
>emb|AJ002220.1|HSJ002220 Homo sapiens B2 gene partial cDNA, clone B2E Length = 3313 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 tccggcctgcagcttcaggac 319 ||||||||||||||||||||| Sbjct: 2038 tccggcctgcagcttcaggac 2018
>dbj|AK074103.1| Homo sapiens mRNA for FLJ00174 protein Length = 4043 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 tccggcctgcagcttcaggac 319 ||||||||||||||||||||| Sbjct: 1198 tccggcctgcagcttcaggac 1178
>gb|AC107677.7| Mus musculus chromosome 3, clone RP23-235F22, complete sequence Length = 157746 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 573 tgtagggacagcagcttgct 592 |||||||||||||||||||| Sbjct: 74139 tgtagggacagcagcttgct 74158
>gb|AC146197.3| Pan troglodytes BAC clone CH251-450H3 from Y, complete sequence Length = 182113 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 ttgatgttacaaacagaaaa 92 |||||||||||||||||||| Sbjct: 45079 ttgatgttacaaacagaaaa 45098
>gb|AC102129.9| Mus musculus chromosome 7, clone RP23-220N19, complete sequence Length = 178200 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 agagaagagagaaacagcaa 21 |||||||||||||||||||| Sbjct: 153208 agagaagagagaaacagcaa 153227
>gb|DQ106079.1| Uncultured bacterium clone ce0_cl27_cn1 60 kDa chaperonin (cpn60) gene, partial cds Length = 555 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 532 cggcctccatcttctccatg 551 |||||||||||||||||||| Sbjct: 367 cggcctccatcttctccatg 348
>ref|XM_001000545.1| PREDICTED: Mus musculus mediator of DNA damage checkpoint 1 (Mdc1), mRNA Length = 6736 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 440 cagagacttctgtgcttcatgaag 463 |||||||||||| ||||||||||| Sbjct: 2037 cagagacttctgagcttcatgaag 2060
>ref|XM_001002229.1| PREDICTED: Mus musculus mediator of DNA damage checkpoint 1 (Mdc1), mRNA Length = 7193 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 440 cagagacttctgtgcttcatgaag 463 |||||||||||| ||||||||||| Sbjct: 2192 cagagacttctgagcttcatgaag 2215
>ref|XM_992110.1| PREDICTED: Mus musculus mediator of DNA damage checkpoint 1 (Mdc1), mRNA Length = 7199 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 440 cagagacttctgtgcttcatgaag 463 |||||||||||| ||||||||||| Sbjct: 2195 cagagacttctgagcttcatgaag 2218
>gb|AC119162.12| Mus musculus chromosome 3, clone RP23-231L12, complete sequence Length = 201218 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 550 tgagcagttgatcaacttcagact 573 ||||||||||||||||||| |||| Sbjct: 115397 tgagcagttgatcaacttctgact 115420
>emb|CR974565.8| Pig DNA sequence from clone CH242-123M10 on chromosome 17, complete sequence Length = 19804 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 gaagagagaaacagcaagaa 24 |||||||||||||||||||| Sbjct: 8349 gaagagagaaacagcaagaa 8368
>gb|AC140721.15| Medicago truncatula clone mth2-16c16, complete sequence Length = 128119 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 60 aacaaaatctgagttgatgttacaaaca 87 |||||||||||| |||||||||||||| Sbjct: 82622 aacaaaatctgaagtgatgttacaaaca 82595
>emb|AL590136.7| Human DNA sequence from clone RP11-640K13 on chromosome 10, complete sequence Length = 60869 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 agagagaaacagcaagaaga 26 |||||||||||||||||||| Sbjct: 50570 agagagaaacagcaagaaga 50589
>emb|AL355984.11| Human DNA sequence from clone RP11-501K3 on chromosome 13 Contains the GJB6 gene for gap junction protein, beta 6 (connexin 30) and 2 CpG islands, complete sequence Length = 160536 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 ttgatgttacaaacagaaaa 92 |||||||||||||||||||| Sbjct: 79067 ttgatgttacaaacagaaaa 79086
>gb|AC159281.3| Mus musculus BAC clone RP23-321H9 from chromosome 3, complete sequence Length = 229114 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 550 tgagcagttgatcaacttcagact 573 ||||||||||||||||||| |||| Sbjct: 211247 tgagcagttgatcaacttctgact 211224
>gb|AC117834.6| Homo sapiens chromosome 8, clone CTD-3239E11, complete sequence Length = 189536 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 563 aacttcagactgtagggaca 582 |||||||||||||||||||| Sbjct: 17500 aacttcagactgtagggaca 17519
>dbj|BS000536.1| Pan troglodytes chromosome Y clone:PTB-100K06, complete sequences Length = 204391 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 ttgatgttacaaacagaaaa 92 |||||||||||||||||||| Sbjct: 75813 ttgatgttacaaacagaaaa 75794
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 ttgatgttacaaacagaaaa 92 |||||||||||||||||||| Sbjct: 20964809 ttgatgttacaaacagaaaa 20964790
>gb|AC148346.12| Medicago truncatula clone mth2-25m19, complete sequence Length = 122590 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 60 aacaaaatctgagttgatgttacaaaca 87 |||||||||||| |||||||||||||| Sbjct: 84894 aacaaaatctgaagtgatgttacaaaca 84867
>gb|AC158604.5| Mus musculus 10 BAC RP23-130B2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 190024 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 500 tgaagctcttttcaggatgaagca 523 ||||| |||||||||||||||||| Sbjct: 113703 tgaagttcttttcaggatgaagca 113680
>gb|AC104211.3| Homo sapiens chromosome 8, clone RP11-100L22, complete sequence Length = 167984 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 563 aacttcagactgtagggaca 582 |||||||||||||||||||| Sbjct: 31562 aacttcagactgtagggaca 31543
>gb|AC073607.19| Homo sapiens 12 BAC RP11-462G20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 165085 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 tataaggccaccaaatgcct 114 |||||||||||||||||||| Sbjct: 20775 tataaggccaccaaatgcct 20794
>gb|AC026695.5| Homo sapiens chromosome 5 clone CTC-284F6, complete sequence Length = 89107 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 acagcaagaagatttgtgaa 34 |||||||||||||||||||| Sbjct: 21623 acagcaagaagatttgtgaa 21604
>gb|DQ184476.1| Orf virus strain NZ2, complete genome Length = 137820 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 527 gatctcggcctccatcttctccat 550 ||||| |||||||||||||||||| Sbjct: 81691 gatcttggcctccatcttctccat 81668
>gb|AC163035.2| Mus musculus BAC clone RP23-301L2 from chromosome 6, complete sequence Length = 196798 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 attacatgaagtaacttttc 139 |||||||||||||||||||| Sbjct: 62921 attacatgaagtaacttttc 62902
>dbj|AK033009.1| Mus musculus 12 days embryo female mullerian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6820401C03 product:hypothetical Forkhead-associated (FHA) domain containing protein, full insert sequence Length = 2577 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 440 cagagacttctgtgcttcatgaag 463 |||||||||||| ||||||||||| Sbjct: 2187 cagagacttctgagcttcatgaag 2210
>emb|BX004831.16| Zebrafish DNA sequence from clone BUSM1-143H6 in linkage group 7, complete sequence Length = 119156 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 aataagtacagtaaagtgat 52 |||||||||||||||||||| Sbjct: 33365 aataagtacagtaaagtgat 33384
>gb|AC010638.7|AC010638 Homo sapiens chromosome 5 clone CTD-2350J17, complete sequence Length = 129298 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 atgttacaaacagaaaattt 95 |||||||||||||||||||| Sbjct: 101878 atgttacaaacagaaaattt 101897
>gb|AC158550.4| Mus musculus chromosome 7, clone RP24-192B7, complete sequence Length = 169846 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 agagaagagagaaacagcaa 21 |||||||||||||||||||| Sbjct: 90696 agagaagagagaaacagcaa 90715
>gb|BC094363.1| Mus musculus mediator of DNA damage checkpoint 1, mRNA (cDNA clone IMAGE:6830858), partial cds Length = 5832 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 440 cagagacttctgtgcttcatgaag 463 |||||||||||| ||||||||||| Sbjct: 1053 cagagacttctgagcttcatgaag 1076
>gb|AC132956.4| Mus musculus BAC clone RP23-106K20 from chromosome 7, complete sequence Length = 195204 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 446 cttctgtgcttcatgaagag 465 |||||||||||||||||||| Sbjct: 48456 cttctgtgcttcatgaagag 48437
>gb|AC175034.1| Mus musculus BAC clone RP23-204E23 from chromosome 7, complete sequence Length = 208487 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 446 cttctgtgcttcatgaagag 465 |||||||||||||||||||| Sbjct: 62213 cttctgtgcttcatgaagag 62232
>emb|AL929296.11| Zebrafish DNA sequence from clone BUSM1-167D6 in linkage group 7, complete sequence Length = 54697 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 aataagtacagtaaagtgat 52 |||||||||||||||||||| Sbjct: 31906 aataagtacagtaaagtgat 31925
>dbj|AK129074.1| Mus musculus mRNA for mKIAA0170 protein Length = 5109 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 440 cagagacttctgtgcttcatgaag 463 |||||||||||| ||||||||||| Sbjct: 86 cagagacttctgagcttcatgaag 109
>emb|AM180252.1| Lawsonia intracellularis PHE/MN1-00 Length = 1457619 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 atttgtgaataagtacagta 45 |||||||||||||||||||| Sbjct: 24231 atttgtgaataagtacagta 24250
>gb|BC085140.1| Mus musculus mediator of DNA damage checkpoint 1, mRNA (cDNA clone IMAGE:6412969), partial cds Length = 5285 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 440 cagagacttctgtgcttcatgaag 463 |||||||||||| ||||||||||| Sbjct: 219 cagagacttctgagcttcatgaag 242
>emb|AL132801.5|CNS01DTN Human chromosome 14 DNA sequence BAC R-661D19 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 168624 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 ttacaaacagaaaatttata 98 |||||||||||||||||||| Sbjct: 57819 ttacaaacagaaaatttata 57838
>emb|CT033787.9| Mouse DNA sequence from clone RP24-86C3 on chromosome 12, complete sequence Length = 194345 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 tacaaacagaaaatttataa 99 |||||||||||||||||||| Sbjct: 62326 tacaaacagaaaatttataa 62345
>gb|AC147235.3| Mus musculus BAC clone RP23-353B7 from 6, complete sequence Length = 193668 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 attacatgaagtaacttttc 139 |||||||||||||||||||| Sbjct: 29834 attacatgaagtaacttttc 29853
>emb|CR974451.9| Mouse DNA sequence from clone RP24-180B11 on chromosome 17, complete sequence Length = 188873 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 440 cagagacttctgtgcttcatgaag 463 |||||||||||| ||||||||||| Sbjct: 74756 cagagacttctgagcttcatgaag 74779
>gb|AY826432.1| Mus musculus mediator of DNA damage checkpoint 1 (Mdc1) gene, complete cds Length = 15898 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 440 cagagacttctgtgcttcatgaag 463 |||||||||||| ||||||||||| Sbjct: 8841 cagagacttctgagcttcatgaag 8864 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,857,549 Number of Sequences: 3902068 Number of extensions: 5857549 Number of successful extensions: 119026 Number of sequences better than 10.0: 84 Number of HSP's better than 10.0 without gapping: 84 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 118794 Number of HSP's gapped (non-prelim): 232 length of query: 611 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 588 effective length of database: 17,143,297,704 effective search space: 10080259049952 effective search space used: 10080259049952 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)