Clone Information

BLAST Search Result

Clone Name	rbags37m14
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_483795.1\| Oryza sativa (japonica cultivar-group), mRNA	123	7e-25
2	ref\|XM_507343.1\| PREDICTED Oryza sativa (japonica cultivar-group...	123	7e-25
3	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	123	7e-25
4	dbj\|AP005544.3\| Oryza sativa (japonica cultivar-group) genomic D...	123	7e-25
5	dbj\|AP004587.3\| Oryza sativa (japonica cultivar-group) genomic D...	123	7e-25
6	dbj\|AK120773.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	123	7e-25
7	dbj\|AK099629.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	123	7e-25
8	gb\|AY104520.1\| Zea mays PCO096740 mRNA sequence	82	2e-12
9	ref\|XM_483796.1\| Oryza sativa (japonica cultivar-group), mRNA	44	0.52
10	emb\|AL359894.9\| Human DNA sequence from clone RP11-379C1 on chro...	44	0.52
11	dbj\|AK069733.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	44	0.52
12	emb\|AL078643.5\|HSJ988G17 Human DNA sequence from clone RP5-988G1...	42	2.0
13	emb\|AL031285.1\|HS58A9 Human DNA sequence from clone RP1-58A9 on ...	42	2.0
14	gb\|AC015766.9\| Homo sapiens chromosome 18, clone RP11-1P16, comp...	42	2.0
15	gb\|AE017350.1\| Cryptococcus neoformans var. neoformans JEC21 chr...	40	8.1
16	gb\|AC004040.1\| Homo sapiens chromosome 8, BAC clone 187f3 (LBNL ...	40	8.1
17	emb\|CR956424.18\| Pig DNA sequence from clone PigE-234J24 on chro...	40	8.1
18	gb\|DQ084724.1\| Oryctolagus cuniculus clone R428 immunoglobulin h...	40	8.1
19	emb\|AL592114.13\| Human DNA sequence from clone RP11-203F10 on ch...	40	8.1
20	gb\|AF491780.1\| Homo sapiens neuregulin 1 (NRG1) gene, partial cd...	40	8.1
21	gb\|AC104000.5\| Homo sapiens chromosome 8, clone RP11-97N12, comp...	40	8.1
22	tpg\|BK000383.1\| TPA: TPA_exp: Homo sapiens neuregulin 1 isoform ...	40	8.1
23	gb\|AC079044.21\| Mus musculus strain C57BL/6J chromosome 16 clone...	40	8.1
24	gb\|AC006287.1\|AC006287 Homo sapiens, clone hRPK.22_A_1, complete...	40	8.1
25	emb\|CT025557.11\| Mouse DNA sequence from clone RP23-356F21 on ch...	40	8.1
26	dbj\|AP001132.4\| Homo sapiens genomic DNA, chromosome 11q clone:R...	40	8.1
27	gb\|AC087802.13\| Mus musculus strain C57BL/6J chromosome 16 clone...	40	8.1

>ref|XM_483795.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2439

 Score =  123 bits (62), Expect = 7e-25
 Identities = 212/260 (81%), Gaps = 9/260 (3%)
 Strand = Plus / Minus

                                                                        
Query: 177  tacttgccgtagatgcacaggcccacctcgtagctcaccaggagcattattgctgacaga 236
            |||||||| |||||||||| |||||||||||||||||||| ||||||||||||||| |  
Sbjct: 2053 tacttgccatagatgcacatgcccacctcgtagctcaccaagagcattattgctgaaaag 1994

                                                                        
Query: 237  aaaaagagacagaagccgccacgcagcaccgcagtcaccgtgttgcagccaccatagtgt 296
            || ||||| |||||||| |||||||| || || || |  |||||||||   ||| |||||
Sbjct: 1993 aagaagaggcagaagccaccacgcagtactgcggttattgtgttgcag---ccaaagtgt 1937

                                                                        
Query: 297  atgcgattatcaggctggaaacctgtggaagagaaaagcagctccatgtcttcatccttc 356
            |  ||  |||||||||  ||||||   |  ||||| |||||||||||| |||||||||||
Sbjct: 1936 acacgggtatcaggctcaaaacct---gccgagaagagcagctccatgccttcatccttc 1880

                                                                        
Query: 357  tggaacgaccacttaccttgtcgagaagcaacagttaagcttcctatgctgattacttca 416
            |  |  ||||||||| |||   ||||| ||  |||||| |||||||||||||||||||||
Sbjct: 1879 tcaagggaccacttatctt---gagaatcaggagttaaacttcctatgctgattacttca 1823

                                
Query: 417  gtagacacactgatggtgtt 436
            | ||| |||| ||| |||||
Sbjct: 1822 gcagagacacggatagtgtt 1803



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 102/121 (84%), Gaps = 1/121 (0%)
 Strand = Plus / Minus

                                                                        
Query: 472  ctgctgcaaaagcagggggagcccgagattgaatccagcatctttacaaaacgctttccc 531
            ||||||||||||||||||||||  |||||||||||||| ||||||||||||||||| || 
Sbjct: 1746 ctgctgcaaaagcagggggagca-gagattgaatccagtatctttacaaaacgcttcccg 1688

                                                                        
Query: 532  atggacccattcttagcccgagaatctgggtaaacaacacaatttaactgactaccagct 591
            ||    | | |||| | | | ||||||||  |||||||| |||||||||||||||| |||
Sbjct: 1687 atcagactactcttggtctgggaatctggtaaaacaacataatttaactgactacccgct 1628

             
Query: 592  t 592
            |
Sbjct: 1627 t 1627

to top

>ref|XM_507343.1| PREDICTED Oryza sativa (japonica cultivar-group), P0604E01.48-1 mRNA
          Length = 2626

 Score =  123 bits (62), Expect = 7e-25
 Identities = 212/260 (81%), Gaps = 9/260 (3%)
 Strand = Plus / Minus

                                                                        
Query: 177  tacttgccgtagatgcacaggcccacctcgtagctcaccaggagcattattgctgacaga 236
            |||||||| |||||||||| |||||||||||||||||||| ||||||||||||||| |  
Sbjct: 2053 tacttgccatagatgcacatgcccacctcgtagctcaccaagagcattattgctgaaaag 1994

                                                                        
Query: 237  aaaaagagacagaagccgccacgcagcaccgcagtcaccgtgttgcagccaccatagtgt 296
            || ||||| |||||||| |||||||| || || || |  |||||||||   ||| |||||
Sbjct: 1993 aagaagaggcagaagccaccacgcagtactgcggttattgtgttgcag---ccaaagtgt 1937

                                                                        
Query: 297  atgcgattatcaggctggaaacctgtggaagagaaaagcagctccatgtcttcatccttc 356
            |  ||  |||||||||  ||||||   |  ||||| |||||||||||| |||||||||||
Sbjct: 1936 acacgggtatcaggctcaaaacct---gccgagaagagcagctccatgccttcatccttc 1880

                                                                        
Query: 357  tggaacgaccacttaccttgtcgagaagcaacagttaagcttcctatgctgattacttca 416
            |  |  ||||||||| |||   ||||| ||  |||||| |||||||||||||||||||||
Sbjct: 1879 tcaagggaccacttatctt---gagaatcaggagttaaacttcctatgctgattacttca 1823

                                
Query: 417  gtagacacactgatggtgtt 436
            | ||| |||| ||| |||||
Sbjct: 1822 gcagagacacggatagtgtt 1803



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 102/121 (84%), Gaps = 1/121 (0%)
 Strand = Plus / Minus

                                                                        
Query: 472  ctgctgcaaaagcagggggagcccgagattgaatccagcatctttacaaaacgctttccc 531
            ||||||||||||||||||||||  |||||||||||||| ||||||||||||||||| || 
Sbjct: 1746 ctgctgcaaaagcagggggagca-gagattgaatccagtatctttacaaaacgcttcccg 1688

                                                                        
Query: 532  atggacccattcttagcccgagaatctgggtaaacaacacaatttaactgactaccagct 591
            ||    | | |||| | | | ||||||||  |||||||| |||||||||||||||| |||
Sbjct: 1687 atcagactactcttggtctgggaatctggtaaaacaacataatttaactgactacccgct 1628

             
Query: 592  t 592
            |
Sbjct: 1627 t 1627

to top

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  123 bits (62), Expect = 7e-25
 Identities = 212/260 (81%), Gaps = 9/260 (3%)
 Strand = Plus / Plus

                                                                            
Query: 177      tacttgccgtagatgcacaggcccacctcgtagctcaccaggagcattattgctgacaga 236
                |||||||| |||||||||| |||||||||||||||||||| ||||||||||||||| |  
Sbjct: 28138207 tacttgccatagatgcacatgcccacctcgtagctcaccaagagcattattgctgaaaag 28138266

                                                                            
Query: 237      aaaaagagacagaagccgccacgcagcaccgcagtcaccgtgttgcagccaccatagtgt 296
                || ||||| |||||||| |||||||| || || || |  |||||||||   ||| |||||
Sbjct: 28138267 aagaagaggcagaagccaccacgcagtactgcggttattgtgttgcag---ccaaagtgt 28138323

                                                                            
Query: 297      atgcgattatcaggctggaaacctgtggaagagaaaagcagctccatgtcttcatccttc 356
                |  ||  |||||||||  ||||||   |  ||||| |||||||||||| |||||||||||
Sbjct: 28138324 acacgggtatcaggctcaaaacct---gccgagaagagcagctccatgccttcatccttc 28138380

                                                                            
Query: 357      tggaacgaccacttaccttgtcgagaagcaacagttaagcttcctatgctgattacttca 416
                |  |  ||||||||| |||   ||||| ||  |||||| |||||||||||||||||||||
Sbjct: 28138381 tcaagggaccacttatctt---gagaatcaggagttaaacttcctatgctgattacttca 28138437

                                    
Query: 417      gtagacacactgatggtgtt 436
                | ||| |||| ||| |||||
Sbjct: 28138438 gcagagacacggatagtgtt 28138457



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 53/56 (94%), Gaps = 1/56 (1%)
 Strand = Plus / Plus

                                                                        
Query: 472      ctgctgcaaaagcagggggagcccgagattgaatccagcatctttacaaaacgctt 527
                ||||||||||||||||||||||  |||||||||||||| |||||||||||||||||
Sbjct: 28138514 ctgctgcaaaagcagggggagca-gagattgaatccagtatctttacaaaacgctt 28138568



 Score = 44.1 bits (22), Expect = 0.52
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                              
Query: 563      aaacaacacaatttaactgactaccagctt 592
                |||||||| |||||||||||||||| ||||
Sbjct: 28138934 aaacaacataatttaactgactacccgctt 28138963

to top

>dbj|AP005544.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0604E01
          Length = 159049

 Score =  123 bits (62), Expect = 7e-25
 Identities = 212/260 (81%), Gaps = 9/260 (3%)
 Strand = Plus / Plus

                                                                          
Query: 177    tacttgccgtagatgcacaggcccacctcgtagctcaccaggagcattattgctgacaga 236
              |||||||| |||||||||| |||||||||||||||||||| ||||||||||||||| |  
Sbjct: 135702 tacttgccatagatgcacatgcccacctcgtagctcaccaagagcattattgctgaaaag 135761

                                                                          
Query: 237    aaaaagagacagaagccgccacgcagcaccgcagtcaccgtgttgcagccaccatagtgt 296
              || ||||| |||||||| |||||||| || || || |  |||||||||   ||| |||||
Sbjct: 135762 aagaagaggcagaagccaccacgcagtactgcggttattgtgttgcag---ccaaagtgt 135818

                                                                          
Query: 297    atgcgattatcaggctggaaacctgtggaagagaaaagcagctccatgtcttcatccttc 356
              |  ||  |||||||||  ||||||   |  ||||| |||||||||||| |||||||||||
Sbjct: 135819 acacgggtatcaggctcaaaacct---gccgagaagagcagctccatgccttcatccttc 135875

                                                                          
Query: 357    tggaacgaccacttaccttgtcgagaagcaacagttaagcttcctatgctgattacttca 416
              |  |  ||||||||| |||   ||||| ||  |||||| |||||||||||||||||||||
Sbjct: 135876 tcaagggaccacttatctt---gagaatcaggagttaaacttcctatgctgattacttca 135932

                                  
Query: 417    gtagacacactgatggtgtt 436
              | ||| |||| ||| |||||
Sbjct: 135933 gcagagacacggatagtgtt 135952



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 53/56 (94%), Gaps = 1/56 (1%)
 Strand = Plus / Plus

                                                                      
Query: 472    ctgctgcaaaagcagggggagcccgagattgaatccagcatctttacaaaacgctt 527
              ||||||||||||||||||||||  |||||||||||||| |||||||||||||||||
Sbjct: 136009 ctgctgcaaaagcagggggagca-gagattgaatccagtatctttacaaaacgctt 136063



 Score = 44.1 bits (22), Expect = 0.52
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 563    aaacaacacaatttaactgactaccagctt 592
              |||||||| |||||||||||||||| ||||
Sbjct: 136429 aaacaacataatttaactgactacccgctt 136458

to top

>dbj|AP004587.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0543D10
          Length = 134866

 Score =  123 bits (62), Expect = 7e-25
 Identities = 212/260 (81%), Gaps = 9/260 (3%)
 Strand = Plus / Plus

                                                                         
Query: 177   tacttgccgtagatgcacaggcccacctcgtagctcaccaggagcattattgctgacaga 236
             |||||||| |||||||||| |||||||||||||||||||| ||||||||||||||| |  
Sbjct: 21680 tacttgccatagatgcacatgcccacctcgtagctcaccaagagcattattgctgaaaag 21739

                                                                         
Query: 237   aaaaagagacagaagccgccacgcagcaccgcagtcaccgtgttgcagccaccatagtgt 296
             || ||||| |||||||| |||||||| || || || |  |||||||||   ||| |||||
Sbjct: 21740 aagaagaggcagaagccaccacgcagtactgcggttattgtgttgcag---ccaaagtgt 21796

                                                                         
Query: 297   atgcgattatcaggctggaaacctgtggaagagaaaagcagctccatgtcttcatccttc 356
             |  ||  |||||||||  ||||||   |  ||||| |||||||||||| |||||||||||
Sbjct: 21797 acacgggtatcaggctcaaaacct---gccgagaagagcagctccatgccttcatccttc 21853

                                                                         
Query: 357   tggaacgaccacttaccttgtcgagaagcaacagttaagcttcctatgctgattacttca 416
             |  |  ||||||||| |||   ||||| ||  |||||| |||||||||||||||||||||
Sbjct: 21854 tcaagggaccacttatctt---gagaatcaggagttaaacttcctatgctgattacttca 21910

                                 
Query: 417   gtagacacactgatggtgtt 436
             | ||| |||| ||| |||||
Sbjct: 21911 gcagagacacggatagtgtt 21930



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 53/56 (94%), Gaps = 1/56 (1%)
 Strand = Plus / Plus

                                                                     
Query: 472   ctgctgcaaaagcagggggagcccgagattgaatccagcatctttacaaaacgctt 527
             ||||||||||||||||||||||  |||||||||||||| |||||||||||||||||
Sbjct: 21987 ctgctgcaaaagcagggggagca-gagattgaatccagtatctttacaaaacgctt 22041



 Score = 44.1 bits (22), Expect = 0.52
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 563   aaacaacacaatttaactgactaccagctt 592
             |||||||| |||||||||||||||| ||||
Sbjct: 22407 aaacaacataatttaactgactacccgctt 22436

to top

>dbj|AK120773.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008J18, full
            insert sequence
          Length = 2626

 Score =  123 bits (62), Expect = 7e-25
 Identities = 212/260 (81%), Gaps = 9/260 (3%)
 Strand = Plus / Minus

                                                                        
Query: 177  tacttgccgtagatgcacaggcccacctcgtagctcaccaggagcattattgctgacaga 236
            |||||||| |||||||||| |||||||||||||||||||| ||||||||||||||| |  
Sbjct: 2053 tacttgccatagatgcacatgcccacctcgtagctcaccaagagcattattgctgaaaag 1994

                                                                        
Query: 237  aaaaagagacagaagccgccacgcagcaccgcagtcaccgtgttgcagccaccatagtgt 296
            || ||||| |||||||| |||||||| || || || |  |||||||||   ||| |||||
Sbjct: 1993 aagaagaggcagaagccaccacgcagtactgcggttattgtgttgcag---ccaaagtgt 1937

                                                                        
Query: 297  atgcgattatcaggctggaaacctgtggaagagaaaagcagctccatgtcttcatccttc 356
            |  ||  |||||||||  ||||||   |  ||||| |||||||||||| |||||||||||
Sbjct: 1936 acacgggtatcaggctcaaaacct---gccgagaagagcagctccatgccttcatccttc 1880

                                                                        
Query: 357  tggaacgaccacttaccttgtcgagaagcaacagttaagcttcctatgctgattacttca 416
            |  |  ||||||||| |||   ||||| ||  |||||| |||||||||||||||||||||
Sbjct: 1879 tcaagggaccacttatctt---gagaatcaggagttaaacttcctatgctgattacttca 1823

                                
Query: 417  gtagacacactgatggtgtt 436
            | ||| |||| ||| |||||
Sbjct: 1822 gcagagacacggatagtgtt 1803



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 102/121 (84%), Gaps = 1/121 (0%)
 Strand = Plus / Minus

                                                                        
Query: 472  ctgctgcaaaagcagggggagcccgagattgaatccagcatctttacaaaacgctttccc 531
            ||||||||||||||||||||||  |||||||||||||| ||||||||||||||||| || 
Sbjct: 1746 ctgctgcaaaagcagggggagca-gagattgaatccagtatctttacaaaacgcttcccg 1688

                                                                        
Query: 532  atggacccattcttagcccgagaatctgggtaaacaacacaatttaactgactaccagct 591
            ||    | | |||| | | | ||||||||  |||||||| |||||||||||||||| |||
Sbjct: 1687 atcagactactcttggtctgggaatctggtaaaacaacataatttaactgactacccgct 1628

             
Query: 592  t 592
            |
Sbjct: 1627 t 1627

to top

>dbj|AK099629.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013057D07, full
            insert sequence
          Length = 2439

 Score =  123 bits (62), Expect = 7e-25
 Identities = 212/260 (81%), Gaps = 9/260 (3%)
 Strand = Plus / Minus

                                                                        
Query: 177  tacttgccgtagatgcacaggcccacctcgtagctcaccaggagcattattgctgacaga 236
            |||||||| |||||||||| |||||||||||||||||||| ||||||||||||||| |  
Sbjct: 2053 tacttgccatagatgcacatgcccacctcgtagctcaccaagagcattattgctgaaaag 1994

                                                                        
Query: 237  aaaaagagacagaagccgccacgcagcaccgcagtcaccgtgttgcagccaccatagtgt 296
            || ||||| |||||||| |||||||| || || || |  |||||||||   ||| |||||
Sbjct: 1993 aagaagaggcagaagccaccacgcagtactgcggttattgtgttgcag---ccaaagtgt 1937

                                                                        
Query: 297  atgcgattatcaggctggaaacctgtggaagagaaaagcagctccatgtcttcatccttc 356
            |  ||  |||||||||  ||||||   |  ||||| |||||||||||| |||||||||||
Sbjct: 1936 acacgggtatcaggctcaaaacct---gccgagaagagcagctccatgccttcatccttc 1880

                                                                        
Query: 357  tggaacgaccacttaccttgtcgagaagcaacagttaagcttcctatgctgattacttca 416
            |  |  ||||||||| |||   ||||| ||  |||||| |||||||||||||||||||||
Sbjct: 1879 tcaagggaccacttatctt---gagaatcaggagttaaacttcctatgctgattacttca 1823

                                
Query: 417  gtagacacactgatggtgtt 436
            | ||| |||| ||| |||||
Sbjct: 1822 gcagagacacggatagtgtt 1803



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 102/121 (84%), Gaps = 1/121 (0%)
 Strand = Plus / Minus

                                                                        
Query: 472  ctgctgcaaaagcagggggagcccgagattgaatccagcatctttacaaaacgctttccc 531
            ||||||||||||||||||||||  |||||||||||||| ||||||||||||||||| || 
Sbjct: 1746 ctgctgcaaaagcagggggagca-gagattgaatccagtatctttacaaaacgcttcccg 1688

                                                                        
Query: 532  atggacccattcttagcccgagaatctgggtaaacaacacaatttaactgactaccagct 591
            ||    | | |||| | | | ||||||||  |||||||| |||||||||||||||| |||
Sbjct: 1687 atcagactactcttggtctgggaatctggtaaaacaacataatttaactgactacccgct 1628

             
Query: 592  t 592
            |
Sbjct: 1627 t 1627

to top

>gb|AY104520.1| Zea mays PCO096740 mRNA sequence
          Length = 674

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 108/129 (83%), Gaps = 1/129 (0%)
 Strand = Plus / Minus

                                                                       
Query: 464 tgggaactctgctgcaaaagcagggggagcccgagattgaatccagcatctttacaaaac 523
           |||||||||| |||||||||| ||||||||  ||||| |||||||  ||| ||||||| |
Sbjct: 129 tgggaactctcctgcaaaagctgggggagca-gagatcgaatccaaaatccttacaaatc 71

                                                                       
Query: 524 gctttcccatggacccattcttagcccgagaatctgggtaaacaacacaatttaactgac 583
            |||||| || |  | | |||||||| ||  ||||||  |||||||||||||||||||||
Sbjct: 70  cctttccaatagtactactcttagcctgaccatctggtaaaacaacacaatttaactgac 11

                    
Query: 584 taccagctt 592
           |||||||||
Sbjct: 10  taccagctt 2



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 78/92 (84%), Gaps = 1/92 (1%)
 Strand = Plus / Minus

                                                                       
Query: 198 cccacctcgtagctcaccaggagcattattgctgacagaaaaaagagacagaag-ccgcc 256
           ||||||||||||||||| | ||||||||||||||| |  || || || |||||| || ||
Sbjct: 408 cccacctcgtagctcactaagagcattattgctgaaacgaagaaaaggcagaagcccacc 349

                                           
Query: 257 acgcagcaccgcagtcaccgtgttgcagccac 288
           |||||||||||| || |  |||||||||||||
Sbjct: 348 acgcagcaccgcggtaatggtgttgcagccac 317

to top

>ref|XM_483796.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1998

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 563  aaacaacacaatttaactgactaccagctt 592
            |||||||| |||||||||||||||| ||||
Sbjct: 1656 aaacaacataatttaactgactacccgctt 1627

to top

>emb|AL359894.9| Human DNA sequence from clone RP11-379C1 on chromosome 1 Contains the
             5' end of gene KIAA1365 and a CpG island, complete
             sequence
          Length = 161040

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 337   gctccatgtcttcatccttctggaac 362
             ||||||||||||| ||||||||||||
Sbjct: 68186 gctccatgtcttcttccttctggaac 68161

to top

>dbj|AK069733.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030H12, full
            insert sequence
          Length = 1998

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 563  aaacaacacaatttaactgactaccagctt 592
            |||||||| |||||||||||||||| ||||
Sbjct: 1656 aaacaacataatttaactgactacccgctt 1627

to top

>emb|AL078643.5|HSJ988G17 Human DNA sequence from clone RP5-988G17 on chromosome 20p13 Contains a
             novel gene, complete sequence
          Length = 86162

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 322   tggaagagaaaagcagctcca 342
             |||||||||||||||||||||
Sbjct: 21232 tggaagagaaaagcagctcca 21212

to top

>emb|AL031285.1|HS58A9 Human DNA sequence from clone RP1-58A9 on chromosome 1q24.1-24.3
             Contains STSs, GSSs, genomic marker D1S210 and a ca repeat
             polymorphism, complete sequence
          Length = 126347

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 316   aacctgtggaagagaaaagca 336
             |||||||||||||||||||||
Sbjct: 84901 aacctgtggaagagaaaagca 84921

to top

>gb|AC015766.9| Homo sapiens chromosome 18, clone RP11-1P16, complete sequence
          Length = 153781

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 364   accacttaccttgtcgagaagcaacagtt 392
             |||||||||||| || |||||||||||||
Sbjct: 98730 accacttaccttctccagaagcaacagtt 98758

to top

>gb|AE017350.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 10, complete
              sequence
          Length = 1085720

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 245    acagaagccgccacgcagcaccgcagtc 272
              ||||| |||||||||||||||| |||||
Sbjct: 616373 acagacgccgccacgcagcaccacagtc 616346

to top

>gb|AC004040.1| Homo sapiens chromosome 8, BAC clone 187f3 (LBNL H111), complete
             sequence
          Length = 59411

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 556   tctgggtaaacaacacaatt 575
             ||||||||||||||||||||
Sbjct: 16437 tctgggtaaacaacacaatt 16456

to top

>emb|CR956424.18| Pig DNA sequence from clone PigE-234J24 on chromosome 6, complete
             sequence
          Length = 118731

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 134   tcataataatctttttatac 153
             ||||||||||||||||||||
Sbjct: 59203 tcataataatctttttatac 59184

to top

>gb|DQ084724.1| Oryctolagus cuniculus clone R428 immunoglobulin heavy chain
           variable region (VH) gene, VH-y33 allele, partial cds
          Length = 309

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 462 cctgggaactctgctgcaaa 481
           ||||||||||||||||||||
Sbjct: 59  cctgggaactctgctgcaaa 78

to top

>emb|AL592114.13| Human DNA sequence from clone RP11-203F10 on chromosome 1 Contains the
             5' end of the REN gene for renin, the KISS1 gene for
             KiSS-1 metastasis-suppressor, a novel gene (FLJ42654), the
             3' end of the gene for phosphoinositol 3-phosphate-binding
             protein-3 (PEPP3) and  a novel gene, complete sequence
          Length = 189023

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 467   gaactctgctgcaaaagcag 486
             ||||||||||||||||||||
Sbjct: 12013 gaactctgctgcaaaagcag 11994

to top

>gb|AF491780.1| Homo sapiens neuregulin 1 (NRG1) gene, partial cds, alternatively spliced
          Length = 1285452

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 556    tctgggtaaacaacacaatt 575
              ||||||||||||||||||||
Sbjct: 166469 tctgggtaaacaacacaatt 166488

to top

>gb|AC104000.5| Homo sapiens chromosome 8, clone RP11-97N12, complete sequence
          Length = 156855

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 556   tctgggtaaacaacacaatt 575
             ||||||||||||||||||||
Sbjct: 14220 tctgggtaaacaacacaatt 14239

to top

>tpg|BK000383.1| TPA: TPA_exp: Homo sapiens neuregulin 1 isoform (NRG1) gene,
              alternatively spliced, complete cds
          Length = 1421559

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 556    tctgggtaaacaacacaatt 575
              ||||||||||||||||||||
Sbjct: 166469 tctgggtaaacaacacaatt 166488

to top

>gb|AC079044.21| Mus musculus strain C57BL/6J chromosome 16 clone rp23-51l7, complete
              sequence
          Length = 228349

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 231    gacagaaaaaagagacagaa 250
              ||||||||||||||||||||
Sbjct: 118734 gacagaaaaaagagacagaa 118753

to top

>gb|AC006287.1|AC006287 Homo sapiens, clone hRPK.22_A_1, complete sequence
          Length = 176153

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 231   gacagaaaaaagagacagaa 250
             ||||||||||||||||||||
Sbjct: 47114 gacagaaaaaagagacagaa 47095

to top

>emb|CT025557.11| Mouse DNA sequence from clone RP23-356F21 on chromosome 13, complete
              sequence
          Length = 186496

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 312    tggaaacctgtggaagagaa 331
              ||||||||||||||||||||
Sbjct: 123577 tggaaacctgtggaagagaa 123558

to top

>dbj|AP001132.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-712D22, complete
              sequences
          Length = 170371

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 318    cctgtggaagagaaaagcag 337
              ||||||||||||||||||||
Sbjct: 114930 cctgtggaagagaaaagcag 114911

to top

>gb|AC087802.13| Mus musculus strain C57BL/6J chromosome 16 clone rp23-472f15, complete
              sequence
          Length = 187260

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 231    gacagaaaaaagagacagaa 250
              ||||||||||||||||||||
Sbjct: 104820 gacagaaaaaagagacagaa 104839


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,974,873
Number of Sequences: 3902068
Number of extensions: 4974873
Number of successful extensions: 95247
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95127
Number of HSP's gapped (non-prelim): 105
length of query: 592
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 569
effective length of database: 17,143,297,704
effective search space: 9754536393576
effective search space used: 9754536393576
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result