ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags37m06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DCUP_SYNP7 (P16891) Uroporphyrinogen decarboxylase (EC 4.1.1.37)... 31 2.8
2ANM2_HUMAN (P55345) Protein arginine N-methyltransferase 2 (EC 2... 30 6.3
3PORCN_DROME (Q9VWV9) Protein-cysteine N-palmitoyltransferase por... 30 6.3

>DCUP_SYNP7 (P16891) Uroporphyrinogen decarboxylase (EC 4.1.1.37) (URO-D) (UPD)|
          Length = 354

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 21/66 (31%), Positives = 31/66 (46%)
 Frame = -1

Query: 326 QQIGNSLVEILLCGLPYCGGTHLLLE*PFSFVCNTKHLAYRRST*LHDLLVQNLEN*FIN 147
           Q++GN    +   G P+    + +         N KHLA+   T LH+LL +  +N  I 
Sbjct: 134 QEVGNEAAVLGFAGAPWTLAAYAIEGKSSKTYANIKHLAFSEPTILHELLGKLADNIAI- 192

Query: 146 YLAIQI 129
           YL  QI
Sbjct: 193 YLCHQI 198



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>ANM2_HUMAN (P55345) Protein arginine N-methyltransferase 2 (EC 2.1.1.-)|
          Length = 433

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 13/56 (23%), Positives = 28/56 (50%)
 Frame = +2

Query: 371 VLAQAPLSPQVYMQLDL*ISSSTDTVLKRPIKTGKLLAKLQPVWRQHVLATMTFSI 538
           VL+  P  P  + +  L +      V    + TG ++ +  PVWR+H+   +++++
Sbjct: 358 VLSTGPFHPTTHWKQTLFMMDDPVPVHTGDVVTGSVVLQRNPVWRRHMSVALSWAV 413



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>PORCN_DROME (Q9VWV9) Protein-cysteine N-palmitoyltransferase porcupine (EC|
           2.3.1.-)
          Length = 525

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +2

Query: 188 VIMCFFCKLDALCYIQRKRATPTADVYLRNMVAHIVV 298
           +++C  C+L  L Y QR+R T  A ++L +    +++
Sbjct: 91  LLLCLLCRLLCLLYSQRRRLTSLAPLHLFHFACGLII 127


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,650,201
Number of Sequences: 219361
Number of extensions: 1602112
Number of successful extensions: 3193
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3193
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6200242422
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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