ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags38a24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51... 94 6e-19
2EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule... 84 4e-16
3APG_ARATH (P40602) Anter-specific proline-rich protein APG precu... 45 3e-04
4YPP3_CAEEL (P52716) Putative serine carboxypeptidase F32A5.3 pre... 30 9.8
5POLS_EEVVE (P36330) Structural polyprotein (p130) [Contains: Cap... 30 9.8

>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)|
           (Alpha-L-fucoside fucohydrolase 2)
           (Alpha-1,2-fucosidase) (AtFXG1)
          Length = 372

 Score = 93.6 bits (231), Expect = 6e-19
 Identities = 45/121 (37%), Positives = 73/121 (60%), Gaps = 9/121 (7%)
 Frame = -2

Query: 679 DLDEHGCIAKFNNAAKRFNTLLSETCDDLRLLLKKSSIIFVDMFAIKYDLVANHTKHGIE 500
           D D HGC++  N+ A++FN  L +   +LR  L +++I +VD++++K++L  +   HG +
Sbjct: 238 DFDSHGCVSPLNHLAQQFNHALKQAVIELRSSLSEAAITYVDVYSLKHELFVHAQGHGFK 297

Query: 499 KPLMTCCGHGGPPYNYDP------KRSCMGSDMDL---CKLGDKFISWDGVHFTDAANSI 347
             L++CCGHGG  YNY+       K+   G ++ +   C   DK + WDGVHFT AAN  
Sbjct: 298 GSLVSCCGHGG-KYNYNKGIGCGMKKIVKGKEVYIGKPCDEPDKAVVWDGVHFTQAANKF 356

Query: 346 V 344
           +
Sbjct: 357 I 357



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>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific|
           protein homolog) (Latex allergen Hev b 13)
          Length = 391

 Score = 84.0 bits (206), Expect = 4e-16
 Identities = 46/135 (34%), Positives = 68/135 (50%), Gaps = 9/135 (6%)
 Frame = -2

Query: 673 DEHGCIAKFNNAAKRFNTLLSETCDDLRLLLKKSSIIFVDMFAIKYDLVANHTKHGIEKP 494
           D  GC   +N  A+ FN  L E    LR  L  ++ + VD++++KY L +   KHG E P
Sbjct: 242 DSAGCAKAYNEVAQHFNHKLKEIVAQLRKDLPLATFVHVDIYSVKYSLFSEPEKHGFEFP 301

Query: 493 LMTCCGHGGPPYNYDPKRSC---MGSD------MDLCKLGDKFISWDGVHFTDAANSIVA 341
           L+TCCG+GG  YN+     C   + +D      +  C      ++WDG H+T+AAN    
Sbjct: 302 LITCCGYGG-KYNFSVTAPCGDTVTADDGTKIVVGSCACPSVRVNWDGAHYTEAANEYFF 360

Query: 340 SMAIGGEYSVPRMKL 296
                G +S P + L
Sbjct: 361 DQISTGAFSDPPVPL 375



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>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 27/111 (24%), Positives = 46/111 (41%)
 Frame = -2

Query: 661 CIAKFNNAAKRFNTLLSETCDDLRLLLKKSSIIFVDMFAIKYDLVANHTKHGIEKPLMTC 482
           C  + N A++ FN+ L      L   L  S+ +++D++ I   ++     +G E+    C
Sbjct: 419 CNEELNYASQLFNSKLLLILGQLSKTLPNSTFVYMDIYTIISQMLETPAAYGFEETKKPC 478

Query: 481 CGHGGPPYNYDPKRSCMGSDMDLCKLGDKFISWDGVHFTDAANSIVASMAI 329
           C  G           C  S   +C     ++ WDGVH T  A   +  + I
Sbjct: 479 CKTG----LLSAGALCKKSTSKICPNTSSYLFWDGVHPTQRAYKTINKVLI 525



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>YPP3_CAEEL (P52716) Putative serine carboxypeptidase F32A5.3 precursor (EC|
           3.4.16.-)
          Length = 574

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 177 PNASSSEVLDNGLTVTVGFLFSSFSILCN 91
           PN   S+++D+G + TV F  S F++L N
Sbjct: 543 PNIQLSDLVDSGSSSTVAFFISMFAVLLN 571



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>POLS_EEVVE (P36330) Structural polyprotein (p130) [Contains: Capsid protein (EC|
            3.4.21.-) (Coat protein) (C); p62 (E3/E2); E3 protein
            (Spike glycoprotein E3); E2 envelope glycoprotein (Spike
            glycoprotein E2); 6K protein; E1 envelope glycoprotein
            (Spike g
          Length = 1254

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 1/97 (1%)
 Frame = -2

Query: 721  CLPAKLAMPRASDGDLDEHGCIAKFNNAAKRFNTLLSET-CDDLRLLLKKSSIIFVDMFA 545
            C+   L +  A+     EH      N A   +NT+++      L + +  + I  +    
Sbjct: 797  CVVPFLVVAGAAGAGAYEHATTMP-NQAGISYNTIVNRAGYAPLPISITPTKIKLIPTVN 855

Query: 544  IKYDLVANHTKHGIEKPLMTCCGHGGPPYNYDPKRSC 434
            ++Y  V  H K G++ P + CCG       Y P   C
Sbjct: 856  LEY--VTCHYKTGMDSPTIKCCGSQECTPTYRPDEQC 890


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,615,245
Number of Sequences: 219361
Number of extensions: 2034007
Number of successful extensions: 6297
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6291
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7422931207
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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