Clone Information

BLAST Search Result

Clone Name	rbags38a16
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK100383.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	418	e-114
2	ref\|XM_463457.1\| Oryza sativa (japonica cultivar-group), predic...	414	e-112
3	ref\|XM_463460.1\| Oryza sativa (japonica cultivar-group), predic...	406	e-110
4	gb\|AY109443.1\| Zea mays CL3420_1 mRNA sequence	373	e-100
5	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	208	2e-50
6	dbj\|AP003224.3\| Oryza sativa (japonica cultivar-group) genomic D...	208	2e-50
7	gb\|AC010987.9\| Homo sapiens BAC clone RP11-553M15 from 2, comple...	44	0.58
8	ref\|XM_320774.2\| Anopheles gambiae str. PEST ENSANGP00000014036 ...	44	0.58
9	gb\|AC169819.2\| Rhesus Macaque BAC CH250-132C22 (Children's Hosp...	42	2.3
10	gb\|AC002429.1\| Homo sapiens BAC clone GS1-200K5 from 7, complete...	42	2.3
11	gb\|AC162867.5\| Mus musculus chromosome 8, clone RP24-363D7, comp...	42	2.3
12	emb\|AL731867.27\| Mouse DNA sequence from clone RP23-73A4 on chro...	42	2.3
13	emb\|AL928606.3\| Mouse DNA sequence from clone RP23-331O10 on chr...	42	2.3
14	gb\|AC023950.6\| Homo sapiens chromosome 11, clone RP11-808N1, com...	42	2.3
15	dbj\|AP001104.4\| Homo sapiens genomic DNA, chromosome 11q clone:R...	42	2.3
16	emb\|CR956421.19\| Pig DNA sequence from clone PigE-225A14 on chro...	42	2.3
17	dbj\|AP001324.4\| Homo sapiens genomic DNA, chromosome 11q clone:R...	42	2.3
18	gb\|AC166060.2\| Mus musculus BAC clone RP23-185O8 from chromosome...	40	9.0
19	gb\|CP000002.2\| Bacillus licheniformis ATCC 14580, complete genome	40	9.0
20	gb\|AE017333.1\| Bacillus licheniformis DSM 13, complete genome	40	9.0
21	gb\|AY587552.1\| Hordeum vulgare subsp. vulgare GAMYB-binding prot...	40	9.0
22	gb\|AC153608.10\| Mus musculus 6 BAC RP23-79A7 (Roswell Park Cance...	40	9.0
23	gb\|AC129021.4\| Mus musculus BAC clone RP23-312H15 from 16, compl...	40	9.0
24	ref\|XM_949683.1\| Theileria annulata strain Ankara hypothetical p...	40	9.0
25	gb\|AC087900.19\| Mus musculus strain C57BL/6J clone rp23-171i6 ma...	40	9.0
26	gb\|AC146865.11\| Medicago truncatula clone mth2-36m14, complete s...	40	9.0
27	emb\|AL590705.9\| Human DNA sequence from clone RP11-498P14 on chr...	40	9.0
28	emb\|AL354915.5\| Human DNA sequence from clone RP11-392A19 on chr...	40	9.0
29	emb\|AL139008.10\| Human DNA sequence from clone RP11-255A11 on ch...	40	9.0
30	emb\|AJ242954.1\|MMU242954 Mus musculus partial mRNA for dysferlin...	40	9.0
31	emb\|AJ307686.2\|EIS307686 Ectomycorrhizal isolate ECM 31 5.8S rRN...	40	9.0
32	gb\|AC090125.7\| Homo sapiens chromosome 18, clone RP11-625N15, co...	40	9.0
33	emb\|BX890609.7\| Zebrafish DNA sequence from clone DKEY-56E5, com...	40	9.0
34	gb\|AC157557.5\| Mus musculus chromosome 7, clone RP24-369M22, com...	40	9.0
35	dbj\|AK087986.1\| Mus musculus 2 days neonate thymus thymic cells ...	40	9.0
36	gb\|AC092492.1\|AC092492 Drosophila melanogaster, chromosome 2L, r...	40	9.0
37	gb\|BC043692.1\| Mus musculus dysferlin, mRNA (cDNA clone IMAGE:51...	40	9.0
38	gb\|AC016751.7\| Homo sapiens BAC clone RP11-504O20 from 2, comple...	40	9.0
39	gb\|AF011889.1\|AF011889 Human Xq28 cosmids U126G1, U142F2, U69B6,...	40	9.0
40	ref\|XM_232123.3\| PREDICTED: Rattus norvegicus dysferlin (predict...	40	9.0
41	dbj\|AK131144.1\| Mus musculus mRNA for mFLJ00175 protein	40	9.0
42	emb\|AL929242.16\| Mouse DNA sequence from clone RP23-78D16 on chr...	40	9.0
43	dbj\|AB023031.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	40	9.0
44	emb\|CT574592.2\| Pan troglodytes chromosome X clone PTB-082B15 ma...	40	9.0
45	gb\|AE003624.3\| Drosophila melanogaster chromosome 2L, section 33...	40	9.0
46	gb\|AC110621.6\| Mus musculus BAC clone RP23-157I3 from 7, complet...	40	9.0
47	gb\|AC099643.5\| Mus musculus chromosome 7, clone RP24-350G1, comp...	40	9.0

>dbj|AK100383.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023085G23, full
            insert sequence
          Length = 3262

 Score =  418 bits (211), Expect = e-114
 Identities = 412/479 (86%)
 Strand = Plus / Minus

                                                                        
Query: 178  tgtcagtccattgtgatccggcctggacctcccttcagcgagcggtgcagaggccgtgat 237
            |||||||||||||||||||||||||| ||||||||||| ||||||| || ||| |  |||
Sbjct: 3047 tgtcagtccattgtgatccggcctggccctcccttcagtgagcggtacaaaggtctggat 2988

                                                                        
Query: 238  cgcttgaagccgaatatgtcggtaatccggcaagttttgggcaggtcatcctcggcgatc 297
            |||||||||||||||||||| || || ||| ||||||||||    ||| | || || || 
Sbjct: 2987 cgcttgaagccgaatatgtcagtgattcggtaagttttgggtgtatcagcttcagcaatg 2928

                                                                        
Query: 298  gccttcttgaactctgccgaatggttgccgctgaagacctgcacgctcactgtcctcctt 357
            |||||||||||||||||| |||| | ||||| |||||| |||||||| || ||  |||||
Sbjct: 2927 gccttcttgaactctgccaaatgttcgccgccgaagacttgcacgcttacagttttcctt 2868

                                                                        
Query: 358  tgaggggcgtccacctttatgtactcatcaaagaattcgatgaattcttctttcttgagc 417
            ||||||||  | |   |||| | || |||||| ||||||||||||||||||||||| |||
Sbjct: 2867 tgaggggcaccaagtcttatatgctgatcaaaaaattcgatgaattcttctttcttcagc 2808

                                                                        
Query: 418  tctcttagcagagcaacctcggactcaaccctatcaaacttgagagttccagcttgaatc 477
            |||||||| ||||| ||||| ||||| ||||| ||||||||||||||||| || | ||||
Sbjct: 2807 tctcttagaagagctacctcagactcgaccctgtcaaacttgagagttcctgcctcaatc 2748

                                                                        
Query: 478  tctccccagtagaagtcagattcctcccacaagtttttaaatttctccagtttcgaatca 537
            |||||||| |||||||  |||||||||||||| ||||| |||||||||||||||||||| 
Sbjct: 2747 tctccccaatagaagtgggattcctcccacaaatttttgaatttctccagtttcgaatcg 2688

                                                                        
Query: 538  ataagcgatttgacatttctcttgaaatccttgtctgacagttcatggattttgctttca 597
            | ||| ||||| ||||| ||||| |||||||||||||||| |||||| ||||||||||||
Sbjct: 2687 acaagtgattttacattcctcttaaaatccttgtctgacaattcatgaattttgctttca 2628

                                                                       
Query: 598  aatgtcttgaagaattcatcaattctagaatcaagatatgaaggatccttcactgtgga 656
            ||  ||||||||||||||||||| |||| |||||||| |||||||||||| ||||||||
Sbjct: 2627 aacatcttgaagaattcatcaatcctagcatcaagatgtgaaggatcctttactgtgga 2569

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>ref|XM_463457.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2841

 Score =  414 bits (209), Expect = e-112
 Identities = 410/477 (85%)
 Strand = Plus / Minus

                                                                        
Query: 180  tcagtccattgtgatccggcctggacctcccttcagcgagcggtgcagaggccgtgatcg 239
            |||||||||||||||||||||||| ||||||||||| ||||||| || ||| |  |||||
Sbjct: 2841 tcagtccattgtgatccggcctggccctcccttcagtgagcggtacaaaggtctggatcg 2782

                                                                        
Query: 240  cttgaagccgaatatgtcggtaatccggcaagttttgggcaggtcatcctcggcgatcgc 299
            |||||||||||||||||| || || ||| ||||||||||    ||| | || || || ||
Sbjct: 2781 cttgaagccgaatatgtcagtgattcggtaagttttgggtgtatcagcttcagcaatggc 2722

                                                                        
Query: 300  cttcttgaactctgccgaatggttgccgctgaagacctgcacgctcactgtcctcctttg 359
            |||||||||||||||| |||| | ||||| |||||| |||||||| || ||  |||||||
Sbjct: 2721 cttcttgaactctgccaaatgttcgccgccgaagacttgcacgcttacagttttcctttg 2662

                                                                        
Query: 360  aggggcgtccacctttatgtactcatcaaagaattcgatgaattcttctttcttgagctc 419
            ||||||  | |   |||| | || |||||| ||||||||||||||||||||||| |||||
Sbjct: 2661 aggggcaccaagtcttatatgctgatcaaaaaattcgatgaattcttctttcttcagctc 2602

                                                                        
Query: 420  tcttagcagagcaacctcggactcaaccctatcaaacttgagagttccagcttgaatctc 479
            |||||| ||||| ||||| ||||| ||||| ||||||||||||||||| || | ||||||
Sbjct: 2601 tcttagaagagctacctcagactcgaccctgtcaaacttgagagttcctgcctcaatctc 2542

                                                                        
Query: 480  tccccagtagaagtcagattcctcccacaagtttttaaatttctccagtttcgaatcaat 539
            |||||| |||||||  |||||||||||||| ||||| |||||||||||||||||||| | 
Sbjct: 2541 tccccaatagaagtgggattcctcccacaaatttttgaatttctccagtttcgaatcgac 2482

                                                                        
Query: 540  aagcgatttgacatttctcttgaaatccttgtctgacagttcatggattttgctttcaaa 599
            ||| ||||| ||||| ||||| |||||||||||||||| |||||| ||||||||||||||
Sbjct: 2481 aagtgattttacattcctcttaaaatccttgtctgacaattcatgaattttgctttcaaa 2422

                                                                     
Query: 600  tgtcttgaagaattcatcaattctagaatcaagatatgaaggatccttcactgtgga 656
              ||||||||||||||||||| |||| |||||||| |||||||||||| ||||||||
Sbjct: 2421 catcttgaagaattcatcaatcctagcatcaagatgtgaaggatcctttactgtgga 2365

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>ref|XM_463460.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2838

 Score =  406 bits (205), Expect = e-110
 Identities = 409/477 (85%)
 Strand = Plus / Minus

                                                                        
Query: 180  tcagtccattgtgatccggcctggacctcccttcagcgagcggtgcagaggccgtgatcg 239
            |||||||||||||||||||||||| ||||||||||| ||||||| ||||||||  |||||
Sbjct: 2838 tcagtccattgtgatccggcctggccctcccttcagtgagcggtacagaggcctggatcg 2779

                                                                        
Query: 240  cttgaagccgaatatgtcggtaatccggcaagttttgggcaggtcatcctcggcgatcgc 299
            |||||||||||||||||| || || ||| ||||||||||    ||| | ||||| || ||
Sbjct: 2778 cttgaagccgaatatgtcagtgattcggtaagttttgggtgcatcagcttcggcaatagc 2719

                                                                        
Query: 300  cttcttgaactctgccgaatggttgccgctgaagacctgcacgctcactgtcctcctttg 359
            ||||||||| |||||| |||| ||||||| |||||| || ||||| | |||| ||| |||
Sbjct: 2718 cttcttgaattctgccaaatgtttgccgccgaagacttgtacgcttaatgtcttccgttg 2659

                                                                        
Query: 360  aggggcgtccacctttatgtactcatcaaagaattcgatgaattcttctttcttgagctc 419
            ||| ||  | |   ||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 2658 aggtgcaccaattcttatgtactgatcaaaaaattcgatgaattcttctttcttgagctc 2599

                                                                        
Query: 420  tcttagcagagcaacctcggactcaaccctatcaaacttgagagttccagcttgaatctc 479
            |||||| ||||  ||||| |||    | |||||||||| ||||||||| || | ||||||
Sbjct: 2598 tcttaggagagatacctcagaccttcctctatcaaactggagagttcctgcctcaatctc 2539

                                                                        
Query: 480  tccccagtagaagtcagattcctcccacaagtttttaaatttctccagtttcgaatcaat 539
            | |||| |||||||| |||||||||||||| |||||  | ||||||||||||||||||||
Sbjct: 2538 tgcccaatagaagtcggattcctcccacaaatttttggacttctccagtttcgaatcaat 2479

                                                                        
Query: 540  aagcgatttgacatttctcttgaaatccttgtctgacagttcatggattttgctttcaaa 599
            ||| ||||| ||||  ||||| |||||||||||||||| ||||||||||||| |||||||
Sbjct: 2478 aagtgattttacatacctcttaaaatccttgtctgacaattcatggattttgttttcaaa 2419

                                                                     
Query: 600  tgtcttgaagaattcatcaattctagaatcaagatatgaaggatccttcactgtgga 656
              |||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||
Sbjct: 2418 catcttgaagaattcatcaactctagcatcaagatatgaaggatcctttactgtgga 2362

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>gb|AY109443.1| Zea mays CL3420_1 mRNA sequence
          Length = 1424

 Score =  373 bits (188), Expect = e-100
 Identities = 405/479 (84%)
 Strand = Plus / Plus

                                                                       
Query: 178 tgtcagtccattgtgatccggcctggacctcccttcagcgagcggtgcagaggccgtgat 237
           ||||||||||| ||||||| ||| ||||||||||| || |||| || ||| ||||  |||
Sbjct: 159 tgtcagtccatggtgatcctgcccggacctcccttgagtgagctgtacagcggcctcgat 218

                                                                       
Query: 238 cgcttgaagccgaatatgtcggtaatccggcaagttttgggcaggtcatcctcggcgatc 297
           || ||||||||||||||||| ||||| | | |  |||||||| ||||  | |||  ||| 
Sbjct: 219 cgtttgaagccgaatatgtctgtaattctgtacattttgggcgggtcggcttcgttgatt 278

                                                                       
Query: 298 gccttcttgaactctgccgaatggttgccgctgaagacctgcacgctcactgtcctcctt 357
           ||||||||||||||| || |||||||||||| |||||| |||||||| | ||||||||||
Sbjct: 279 gccttcttgaactctaccaaatggttgccgccgaagacttgcacgcttagtgtcctcctt 338

                                                                       
Query: 358 tgaggggcgtccacctttatgtactcatcaaagaattcgatgaattcttctttcttgagc 417
           ||||| |||||||| ||||| ||||  |  ||| | ||||||||||||||||||||||||
Sbjct: 339 tgaggcgcgtccacttttatatactggttgaagtactcgatgaattcttctttcttgagc 398

                                                                       
Query: 418 tctcttagcagagcaacctcggactcaaccctatcaaacttgagagttccagcttgaatc 477
           |||||||||| ||| ||||| ||||| |||||||||||||| |||||||| || | ||||
Sbjct: 399 tctcttagcatagcgacctcagactcgaccctatcaaacttcagagttcctgcctcaatc 458

                                                                       
Query: 478 tctccccagtagaagtcagattcctcccacaagtttttaaatttctccagtttcgaatca 537
           |||||||||||||| | |||||||||||| |||     ||| ||||||||||| ||||||
Sbjct: 459 tctccccagtagaaatgagattcctcccataagnnnnnaaacttctccagtttagaatca 518

                                                                       
Query: 538 ataagcgatttgacatttctcttgaaatccttgtctgacagttcatggattttgctttca 597
           || |  ||||| ||||||||||||||||||||||| || ||||||| |||||||||||||
Sbjct: 519 attaatgatttcacatttctcttgaaatccttgtcggagagttcatagattttgctttca 578

                                                                      
Query: 598 aatgtcttgaagaattcatcaattctagaatcaagatatgaaggatccttcactgtgga 656
           ||  |||| ||||| ||||||| ||||  ||| || |||||||||||||| ||||||||
Sbjct: 579 aacatcttaaagaactcatcaactctaacatcgaggtatgaaggatcctttactgtgga 637

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  208 bits (105), Expect = 2e-50
 Identities = 216/253 (85%)
 Strand = Plus / Minus

                                                                            
Query: 178      tgtcagtccattgtgatccggcctggacctcccttcagcgagcggtgcagaggccgtgat 237
                |||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||  |||
Sbjct: 32987631 tgtcagtccattgtgatccggcctggccctcccttcagtgagcggtacagaggcctggat 32987572

                                                                            
Query: 238      cgcttgaagccgaatatgtcggtaatccggcaagttttgggcaggtcatcctcggcgatc 297
                |||||||||||||||||||| || || ||| ||||||||||    ||| | ||||| || 
Sbjct: 32987571 cgcttgaagccgaatatgtcagtgattcggtaagttttgggtgcatcagcttcggcaata 32987512

                                                                            
Query: 298      gccttcttgaactctgccgaatggttgccgctgaagacctgcacgctcactgtcctcctt 357
                ||||||||||| |||||| |||| ||||||| |||||| || ||||| | |||| ||| |
Sbjct: 32987511 gccttcttgaattctgccaaatgtttgccgccgaagacttgtacgcttaatgtcttccgt 32987452

                                                                            
Query: 358      tgaggggcgtccacctttatgtactcatcaaagaattcgatgaattcttctttcttgagc 417
                ||||| ||  | |   ||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 32987451 tgaggtgcaccaattcttatgtactgatcaaaaaattcgatgaattcttctttcttgagc 32987392

                             
Query: 418      tctcttagcagag 430
                |||||||| ||||
Sbjct: 32987391 tctcttaggagag 32987379



 Score =  180 bits (91), Expect = 4e-42
 Identities = 217/259 (83%)
 Strand = Plus / Minus

                                                                            
Query: 178      tgtcagtccattgtgatccggcctggacctcccttcagcgagcggtgcagaggccgtgat 237
                |||||||||||||||||||||||||| ||||||||||| ||||||| || ||| |  |||
Sbjct: 32969862 tgtcagtccattgtgatccggcctggccctcccttcagtgagcggtacaaaggtctggat 32969803

                                                                            
Query: 238      cgcttgaagccgaatatgtcggtaatccggcaagttttgggcaggtcatcctcggcgatc 297
                |||||||||||||||||||| || || ||| ||||||||||    ||| | || || || 
Sbjct: 32969802 cgcttgaagccgaatatgtcagtgattcggtaagttttgggtgtatcagcttcagcaatg 32969743

                                                                            
Query: 298      gccttcttgaactctgccgaatggttgccgctgaagacctgcacgctcactgtcctcctt 357
                |||||||||||||||||| |||| | ||||| |||||| |||||||| || ||  |||||
Sbjct: 32969742 gccttcttgaactctgccaaatgttcgccgccgaagacttgcacgcttacagttttcctt 32969683

                                                                            
Query: 358      tgaggggcgtccacctttatgtactcatcaaagaattcgatgaattcttctttcttgagc 417
                ||||||||  | |   |||| | || |||||| ||||||||||||||||||||||| |||
Sbjct: 32969682 tgaggggcaccaagtcttatatgctgatcaaaaaattcgatgaattcttctttcttcagc 32969623

                                   
Query: 418      tctcttagcagagcaacct 436
                |||||||| ||||| ||||
Sbjct: 32969622 tctcttagaagagctacct 32969604



 Score =  127 bits (64), Expect = 5e-26
 Identities = 112/128 (87%)
 Strand = Plus / Minus

                                                                            
Query: 432      aacctcggactcaaccctatcaaacttgagagttccagcttgaatctctccccagtagaa 491
                |||||| ||||| ||||| ||||||||||||||||| || | |||||||||||| |||||
Sbjct: 32969444 aacctcagactcgaccctgtcaaacttgagagttcctgcctcaatctctccccaatagaa 32969385

                                                                            
Query: 492      gtcagattcctcccacaagtttttaaatttctccagtttcgaatcaataagcgatttgac 551
                ||  |||||||||||||| ||||| |||||||||||||||||||| | ||| ||||| ||
Sbjct: 32969384 gtgggattcctcccacaaatttttgaatttctccagtttcgaatcgacaagtgattttac 32969325

                        
Query: 552      atttctct 559
                ||| ||||
Sbjct: 32969324 attcctct 32969317



 Score =  121 bits (61), Expect = 3e-24
 Identities = 79/85 (92%)
 Strand = Plus / Minus

                                                                            
Query: 562      aaatccttgtctgacagttcatggattttgctttcaaatgtcttgaagaattcatcaatt 621
                |||||||||||||||| ||||||||||||| |||||||  |||||||||||||||||| |
Sbjct: 32986854 aaatccttgtctgacaattcatggattttgttttcaaacatcttgaagaattcatcaact 32986795

                                         
Query: 622      ctagaatcaagatatgaaggatcct 646
                |||| ||||||||||||||||||||
Sbjct: 32986794 ctagcatcaagatatgaaggatcct 32986770



 Score =  113 bits (57), Expect = 8e-22
 Identities = 78/85 (91%)
 Strand = Plus / Minus

                                                                            
Query: 562      aaatccttgtctgacagttcatggattttgctttcaaatgtcttgaagaattcatcaatt 621
                |||||||||||||||| |||||| ||||||||||||||  ||||||||||||||||||| 
Sbjct: 32969017 aaatccttgtctgacaattcatgaattttgctttcaaacatcttgaagaattcatcaatc 32968958

                                         
Query: 622      ctagaatcaagatatgaaggatcct 646
                |||| |||||||| |||||||||||
Sbjct: 32968957 ctagcatcaagatgtgaaggatcct 32968933



 Score =  107 bits (54), Expect = 5e-20
 Identities = 93/106 (87%)
 Strand = Plus / Minus

                                                                            
Query: 448      ctatcaaacttgagagttccagcttgaatctctccccagtagaagtcagattcctcccac 507
                |||||||||| ||||||||| || | ||||||| |||| |||||||| ||||||||||||
Sbjct: 32987234 ctatcaaactggagagttcctgcctcaatctctgcccaatagaagtcggattcctcccac 32987175

                                                              
Query: 508      aagtttttaaatttctccagtttcgaatcaataagcgatttgacat 553
                || |||||  | ||||||||||||||||||||||| ||||| ||||
Sbjct: 32987174 aaatttttggacttctccagtttcgaatcaataagtgattttacat 32987129

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>dbj|AP003224.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0010B10
          Length = 155263

 Score =  208 bits (105), Expect = 2e-50
 Identities = 216/253 (85%)
 Strand = Plus / Minus

                                                                         
Query: 178   tgtcagtccattgtgatccggcctggacctcccttcagcgagcggtgcagaggccgtgat 237
             |||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||  |||
Sbjct: 53859 tgtcagtccattgtgatccggcctggccctcccttcagtgagcggtacagaggcctggat 53800

                                                                         
Query: 238   cgcttgaagccgaatatgtcggtaatccggcaagttttgggcaggtcatcctcggcgatc 297
             |||||||||||||||||||| || || ||| ||||||||||    ||| | ||||| || 
Sbjct: 53799 cgcttgaagccgaatatgtcagtgattcggtaagttttgggtgcatcagcttcggcaata 53740

                                                                         
Query: 298   gccttcttgaactctgccgaatggttgccgctgaagacctgcacgctcactgtcctcctt 357
             ||||||||||| |||||| |||| ||||||| |||||| || ||||| | |||| ||| |
Sbjct: 53739 gccttcttgaattctgccaaatgtttgccgccgaagacttgtacgcttaatgtcttccgt 53680

                                                                         
Query: 358   tgaggggcgtccacctttatgtactcatcaaagaattcgatgaattcttctttcttgagc 417
             ||||| ||  | |   ||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 53679 tgaggtgcaccaattcttatgtactgatcaaaaaattcgatgaattcttctttcttgagc 53620

                          
Query: 418   tctcttagcagag 430
             |||||||| ||||
Sbjct: 53619 tctcttaggagag 53607



 Score =  180 bits (91), Expect = 4e-42
 Identities = 217/259 (83%)
 Strand = Plus / Minus

                                                                         
Query: 178   tgtcagtccattgtgatccggcctggacctcccttcagcgagcggtgcagaggccgtgat 237
             |||||||||||||||||||||||||| ||||||||||| ||||||| || ||| |  |||
Sbjct: 36090 tgtcagtccattgtgatccggcctggccctcccttcagtgagcggtacaaaggtctggat 36031

                                                                         
Query: 238   cgcttgaagccgaatatgtcggtaatccggcaagttttgggcaggtcatcctcggcgatc 297
             |||||||||||||||||||| || || ||| ||||||||||    ||| | || || || 
Sbjct: 36030 cgcttgaagccgaatatgtcagtgattcggtaagttttgggtgtatcagcttcagcaatg 35971

                                                                         
Query: 298   gccttcttgaactctgccgaatggttgccgctgaagacctgcacgctcactgtcctcctt 357
             |||||||||||||||||| |||| | ||||| |||||| |||||||| || ||  |||||
Sbjct: 35970 gccttcttgaactctgccaaatgttcgccgccgaagacttgcacgcttacagttttcctt 35911

                                                                         
Query: 358   tgaggggcgtccacctttatgtactcatcaaagaattcgatgaattcttctttcttgagc 417
             ||||||||  | |   |||| | || |||||| ||||||||||||||||||||||| |||
Sbjct: 35910 tgaggggcaccaagtcttatatgctgatcaaaaaattcgatgaattcttctttcttcagc 35851

                                
Query: 418   tctcttagcagagcaacct 436
             |||||||| ||||| ||||
Sbjct: 35850 tctcttagaagagctacct 35832



 Score =  127 bits (64), Expect = 5e-26
 Identities = 112/128 (87%)
 Strand = Plus / Minus

                                                                         
Query: 432   aacctcggactcaaccctatcaaacttgagagttccagcttgaatctctccccagtagaa 491
             |||||| ||||| ||||| ||||||||||||||||| || | |||||||||||| |||||
Sbjct: 35672 aacctcagactcgaccctgtcaaacttgagagttcctgcctcaatctctccccaatagaa 35613

                                                                         
Query: 492   gtcagattcctcccacaagtttttaaatttctccagtttcgaatcaataagcgatttgac 551
             ||  |||||||||||||| ||||| |||||||||||||||||||| | ||| ||||| ||
Sbjct: 35612 gtgggattcctcccacaaatttttgaatttctccagtttcgaatcgacaagtgattttac 35553

                     
Query: 552   atttctct 559
             ||| ||||
Sbjct: 35552 attcctct 35545



 Score =  121 bits (61), Expect = 3e-24
 Identities = 79/85 (92%)
 Strand = Plus / Minus

                                                                         
Query: 562   aaatccttgtctgacagttcatggattttgctttcaaatgtcttgaagaattcatcaatt 621
             |||||||||||||||| ||||||||||||| |||||||  |||||||||||||||||| |
Sbjct: 53082 aaatccttgtctgacaattcatggattttgttttcaaacatcttgaagaattcatcaact 53023

                                      
Query: 622   ctagaatcaagatatgaaggatcct 646
             |||| ||||||||||||||||||||
Sbjct: 53022 ctagcatcaagatatgaaggatcct 52998



 Score =  113 bits (57), Expect = 8e-22
 Identities = 78/85 (91%)
 Strand = Plus / Minus

                                                                         
Query: 562   aaatccttgtctgacagttcatggattttgctttcaaatgtcttgaagaattcatcaatt 621
             |||||||||||||||| |||||| ||||||||||||||  ||||||||||||||||||| 
Sbjct: 35245 aaatccttgtctgacaattcatgaattttgctttcaaacatcttgaagaattcatcaatc 35186

                                      
Query: 622   ctagaatcaagatatgaaggatcct 646
             |||| |||||||| |||||||||||
Sbjct: 35185 ctagcatcaagatgtgaaggatcct 35161



 Score =  107 bits (54), Expect = 5e-20
 Identities = 93/106 (87%)
 Strand = Plus / Minus

                                                                         
Query: 448   ctatcaaacttgagagttccagcttgaatctctccccagtagaagtcagattcctcccac 507
             |||||||||| ||||||||| || | ||||||| |||| |||||||| ||||||||||||
Sbjct: 53462 ctatcaaactggagagttcctgcctcaatctctgcccaatagaagtcggattcctcccac 53403

                                                           
Query: 508   aagtttttaaatttctccagtttcgaatcaataagcgatttgacat 553
             || |||||  | ||||||||||||||||||||||| ||||| ||||
Sbjct: 53402 aaatttttggacttctccagtttcgaatcaataagtgattttacat 53357

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>gb|AC010987.9| Homo sapiens BAC clone RP11-553M15 from 2, complete sequence
          Length = 193319

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 579   ttcatggattttgctttcaaat 600
             ||||||||||||||||||||||
Sbjct: 99757 ttcatggattttgctttcaaat 99736

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>ref|XM_320774.2| Anopheles gambiae str. PEST ENSANGP00000014036
           (ENSANGG00000011547), partial mRNA
          Length = 1506

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 284 catcctcggcgatcgccttcttgaac 309
           |||||||||||||||||||| |||||
Sbjct: 634 catcctcggcgatcgccttcgtgaac 609

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>gb|AC169819.2| Rhesus Macaque  BAC CH250-132C22 (Children's Hospital Oakland Research
             Institute Rhesus macaque Adult Male BAC Library) complete
             sequence
          Length = 176070

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 508   aagtttttaaatttctccagt 528
             |||||||||||||||||||||
Sbjct: 68111 aagtttttaaatttctccagt 68131

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>gb|AC002429.1| Homo sapiens BAC clone GS1-200K5 from 7, complete sequence
          Length = 234053

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 106    gagaaaaatcaatcaaaattg 126
              |||||||||||||||||||||
Sbjct: 121168 gagaaaaatcaatcaaaattg 121188

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>gb|AC162867.5| Mus musculus chromosome 8, clone RP24-363D7, complete sequence
          Length = 187070

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 511    tttttaaatttctccagtttc 531
              |||||||||||||||||||||
Sbjct: 156130 tttttaaatttctccagtttc 156110

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>emb|AL731867.27| Mouse DNA sequence from clone RP23-73A4 on chromosome 11 Contains the
            5' end of the Kcnip1 gene for Kv channel-interacting
            protein 1, the Kcnmb1 gene for potassium large
            conductance calcium-activated channel, subfamily M, beta
            member 1 and the 3' end of a novel gene, complete
            sequence
          Length = 173783

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 489  gaagtcagattcctcccacaa 509
            |||||||||||||||||||||
Sbjct: 1384 gaagtcagattcctcccacaa 1364

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>emb|AL928606.3| Mouse DNA sequence from clone RP23-331O10 on chromosome 11, complete
            sequence
          Length = 3160

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 489  gaagtcagattcctcccacaa 509
            |||||||||||||||||||||
Sbjct: 2544 gaagtcagattcctcccacaa 2524

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>gb|AC023950.6| Homo sapiens chromosome 11, clone RP11-808N1, complete sequence
          Length = 211464

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 466    ccagcttgaatctctccccag 486
              |||||||||||||||||||||
Sbjct: 179642 ccagcttgaatctctccccag 179662

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>dbj|AP001104.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-755I3, complete
              sequence
          Length = 179727

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 466    ccagcttgaatctctccccagtaga 490
              ||||||||||| |||||||||||||
Sbjct: 129820 ccagcttgaatttctccccagtaga 129844

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>emb|CR956421.19| Pig DNA sequence from clone PigE-225A14 on chromosome 6, complete
             sequence
          Length = 127959

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 106   gagaaaaatcaatcaaaattg 126
             |||||||||||||||||||||
Sbjct: 73150 gagaaaaatcaatcaaaattg 73170

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>dbj|AP001324.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-864N7, complete
             sequences
          Length = 230157

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 466   ccagcttgaatctctccccagtaga 490
             ||||||||||| |||||||||||||
Sbjct: 38585 ccagcttgaatttctccccagtaga 38609

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>gb|AC166060.2| Mus musculus BAC clone RP23-185O8 from chromosome 9, complete sequence
          Length = 198365

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 602   tcttgaagaattcatcaattctag 625
             |||||| |||||||||||||||||
Sbjct: 22165 tcttgatgaattcatcaattctag 22142

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>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome
          Length = 4222334

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 394     tcgatgaattcttctttctt 413
               ||||||||||||||||||||
Sbjct: 1767737 tcgatgaattcttctttctt 1767718

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>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome
          Length = 4222645

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 394     tcgatgaattcttctttctt 413
               ||||||||||||||||||||
Sbjct: 1768583 tcgatgaattcttctttctt 1768564

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>gb|AY587552.1| Hordeum vulgare subsp. vulgare GAMYB-binding protein mRNA, complete
            cds
          Length = 2275

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 575  acagttcatggattttgctt 594
            ||||||||||||||||||||
Sbjct: 2186 acagttcatggattttgctt 2167

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>gb|AC153608.10| Mus musculus 6 BAC RP23-79A7 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 188294

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 195   ccggcctggacctcccttca 214
             ||||||||||||||||||||
Sbjct: 79761 ccggcctggacctcccttca 79780

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>gb|AC129021.4| Mus musculus BAC clone RP23-312H15 from 16, complete sequence
          Length = 184961

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 609   gaattcatcaattctagaat 628
             ||||||||||||||||||||
Sbjct: 36279 gaattcatcaattctagaat 36298

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>ref|XM_949683.1| Theileria annulata strain Ankara hypothetical protein (TA02490)
            partial mRNA
          Length = 2835

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 396  gatgaattcttctttcttgagctc 419
            |||||||||||||||||| |||||
Sbjct: 2442 gatgaattcttctttcttaagctc 2419

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>gb|AC087900.19| Mus musculus strain C57BL/6J clone rp23-171i6 map 19, complete sequence
          Length = 195066

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 609    gaattcatcaattctagaat 628
              ||||||||||||||||||||
Sbjct: 138339 gaattcatcaattctagaat 138358

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>gb|AC146865.11| Medicago truncatula clone mth2-36m14, complete sequence
          Length = 128493

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 107   agaaaaatcaatcaaaattg 126
             ||||||||||||||||||||
Sbjct: 72527 agaaaaatcaatcaaaattg 72508

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>emb|AL590705.9| Human DNA sequence from clone RP11-498P14 on chromosome 9 Contains four
              novel genes, a novel gene similar to FLJ23393. the 5' end
              of a novel gene (KIAA1529) and two CpG islands, complete
              sequence
          Length = 130244

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 112    aatcaatcaaaattgggttc 131
              ||||||||||||||||||||
Sbjct: 104751 aatcaatcaaaattgggttc 104770

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>emb|AL354915.5| Human DNA sequence from clone RP11-392A19 on chromosome 13 Contains a
              novel pseudogene and a keratin 18 (KRT18) (K18, CYK18)
              pseudogene, complete sequence
          Length = 156442

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 107    agaaaaatcaatcaaaattg 126
              ||||||||||||||||||||
Sbjct: 103271 agaaaaatcaatcaaaattg 103252

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>emb|AL139008.10| Human DNA sequence from clone RP11-255A11 on chromosome 9 Contains
            four novel genes, the gene for a novel protein similar to
            suppressor of G2 allele of SKP1 homolog, the gene for a
            novel protein similar to KIAA1074, a melanoma antigen
            pseudogene, a sorting nexin 18 (SNX18) pseudogene, a
            trypsin domain pseudogene, two genes for novel
            immunoglobulin domain containing proteins, the gene for a
            novel protein similar to annexin A2 (ANXA2), the gene for
            a novel protein similar to T-cell receptor beta chain V
            region proteins, a T-cell receptor beta chain V region
            protein LB2 pseudogene and two CpG islands, complete
            sequence
          Length = 159974

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 112  aatcaatcaaaattgggttc 131
            ||||||||||||||||||||
Sbjct: 3979 aatcaatcaaaattgggttc 3960

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>emb|AJ242954.1|MMU242954 Mus musculus partial mRNA for dysferlin (dysf gene)
          Length = 5078

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 195  ccggcctggacctcccttca 214
            ||||||||||||||||||||
Sbjct: 3995 ccggcctggacctcccttca 4014

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>emb|AJ307686.2|EIS307686 Ectomycorrhizal isolate ECM 31 5.8S rRNA gene and ITS 1 and 2
          Length = 507

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 385 tcaaagaattcgatgaattc 404
           ||||||||||||||||||||
Sbjct: 291 tcaaagaattcgatgaattc 310

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>gb|AC090125.7| Homo sapiens chromosome 18, clone RP11-625N15, complete sequence
          Length = 163228

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 512   ttttaaatttctccagtttc 531
             ||||||||||||||||||||
Sbjct: 52577 ttttaaatttctccagtttc 52596

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>emb|BX890609.7| Zebrafish DNA sequence from clone DKEY-56E5, complete sequence
          Length = 228713

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 111   aaatcaatcaaaattgggttcatg 134
             ||||||| ||||||||||||||||
Sbjct: 87668 aaatcaaacaaaattgggttcatg 87691

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>gb|AC157557.5| Mus musculus chromosome 7, clone RP24-369M22, complete sequence
          Length = 202543

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 106   gagaaaaatcaatcaaaatt 125
             ||||||||||||||||||||
Sbjct: 32444 gagaaaaatcaatcaaaatt 32425

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>dbj|AK087986.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
            full-length enriched library, clone:E430001M20
            product:dysferlin, full insert sequence
          Length = 2533

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 195  ccggcctggacctcccttca 214
            ||||||||||||||||||||
Sbjct: 1449 ccggcctggacctcccttca 1468

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>gb|AC092492.1|AC092492 Drosophila melanogaster, chromosome 2L, region 30B-30E, BAC clone
              BACR20B09, complete sequence
          Length = 177997

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 108    gaaaaatcaatcaaaattgggttc 131
              ||||||||||||||||||| ||||
Sbjct: 145734 gaaaaatcaatcaaaattgtgttc 145711

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>gb|BC043692.1| Mus musculus dysferlin, mRNA (cDNA clone IMAGE:5150289), partial
           cds
          Length = 2046

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 195 ccggcctggacctcccttca 214
           ||||||||||||||||||||
Sbjct: 949 ccggcctggacctcccttca 968

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>gb|AC016751.7| Homo sapiens BAC clone RP11-504O20 from 2, complete sequence
          Length = 176379

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 107   agaaaaatcaatcaaaattg 126
             ||||||||||||||||||||
Sbjct: 45960 agaaaaatcaatcaaaattg 45941

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>gb|AF011889.1|AF011889 Human Xq28 cosmids U126G1, U142F2, U69B6, U145C10, U169A5, U84H1, U24D12,
              U80A7, U153E6, L35485, and R7-163A8 containing iduronate
              2-sulfatase gene and pseudogene, complete sequence
          Length = 326663

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 107    agaaaaatcaatcaaaattg 126
              ||||||||||||||||||||
Sbjct: 154108 agaaaaatcaatcaaaattg 154127

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>ref|XM_232123.3| PREDICTED: Rattus norvegicus dysferlin (predicted) (Dysf_predicted),
            mRNA
          Length = 6810

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 195  ccggcctggacctcccttca 214
            ||||||||||||||||||||
Sbjct: 5673 ccggcctggacctcccttca 5692

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>dbj|AK131144.1| Mus musculus mRNA for mFLJ00175 protein
          Length = 6660

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 195  ccggcctggacctcccttca 214
            ||||||||||||||||||||
Sbjct: 5574 ccggcctggacctcccttca 5593

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>emb|AL929242.16| Mouse DNA sequence from clone RP23-78D16 on chromosome 2, complete
              sequence
          Length = 217352

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 327    gctgaagacctgcacgctcactgt 350
              ||||||||||||| ||||||||||
Sbjct: 175662 gctgaagacctgcccgctcactgt 175685

to top

>dbj|AB023031.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K2K18
          Length = 41465

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 387   aaagaattcgatgaattctt 406
             ||||||||||||||||||||
Sbjct: 40834 aaagaattcgatgaattctt 40853

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>emb|CT574592.2| Pan troglodytes chromosome X clone PTB-082B15 map Xq28, complete sequence
          Length = 228540

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 107    agaaaaatcaatcaaaattg 126
              ||||||||||||||||||||
Sbjct: 115205 agaaaaatcaatcaaaattg 115224

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>gb|AE003624.3| Drosophila melanogaster chromosome 2L, section 33 of 83 of the complete
              sequence
          Length = 270771

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 108    gaaaaatcaatcaaaattgggttc 131
              ||||||||||||||||||| ||||
Sbjct: 199509 gaaaaatcaatcaaaattgtgttc 199486

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>gb|AC110621.6| Mus musculus BAC clone RP23-157I3 from 7, complete sequence
          Length = 202956

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 511    tttttaaatttctccagttt 530
              ||||||||||||||||||||
Sbjct: 107363 tttttaaatttctccagttt 107344

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>gb|AC099643.5| Mus musculus chromosome 7, clone RP24-350G1, complete sequence
          Length = 139303

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 106   gagaaaaatcaatcaaaatt 125
             ||||||||||||||||||||
Sbjct: 15634 gagaaaaatcaatcaaaatt 15615


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,184,735
Number of Sequences: 3902068
Number of extensions: 6184735
Number of successful extensions: 122596
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 122395
Number of HSP's gapped (non-prelim): 194
length of query: 660
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 637
effective length of database: 17,143,297,704
effective search space: 10920280637448
effective search space used: 10920280637448
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result