>UBPX_CAEEL (P34547) Probable ubiquitin carboxyl-terminal hydrolase R10E11.3|
           (EC 3.1.2.15) (Ubiquitin thioesterase)
           (Ubiquitin-specific processing protease)
           (Deubiquitinating enzyme)
          Length = 410

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 11/64 (17%)
 Frame = +3

Query: 12  LL*FTTQAFRFPEP--RHPRLLYKITLTKVCR---------HGKSMILLAALLFHAGCTN 158
           LL    + F+F EP  RH +L Y++      R         +G  M  L A + H G T 
Sbjct: 279 LLALHLKRFKFVEPLNRHTKLSYRVVFPLELRLFNVSDDAEYGDRMYDLVATVVHCGATP 338

Query: 159 RKGH 170
            +GH
Sbjct: 339 NRGH 342

>RGYR1_AERPE (Q9YCB6) Reverse gyrase 1 [Includes: Helicase (EC 3.6.1.-);|
            Topoisomerase (EC 5.99.1.3)]
          Length = 1376

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 120  KSWIYHDDRPLSVLFCIATEDVEVPET*KPVL 25
            K W+Y       +LF + ++D EVPE+ K VL
Sbjct: 932  KVWLYRVVHDSQLLFAVRSDDPEVPESVKRVL 963

>LGT_RHOPA (P60973) Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)|
          Length = 286

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 45  PEPRHPRLLYKITLTKVCRHGKSMILLAALLFHAGCTNRKG 167
           P PRHP  LY+  L      G  + ++ AL+  AG   R G
Sbjct: 177 PLPRHPSQLYEAGL-----EGIGLFVILALMIRAGALKRPG 212

>FUCI_SHIFL (P69923) L-fucose isomerase (EC 5.3.1.25) (6-deoxy-L-galactose|
           isomerase) (FucIase)
          Length = 591

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 140 EEKCSKQNHGFTMTTDLCQCY 78
           EEK S QN G T+T   C CY
Sbjct: 72  EEKFSSQNVGLTITVTPCWCY 92

>FUCI_ECOLI (P69922) L-fucose isomerase (EC 5.3.1.25) (6-deoxy-L-galactose|
           isomerase) (FucIase)
          Length = 591

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 140 EEKCSKQNHGFTMTTDLCQCY 78
           EEK S QN G T+T   C CY
Sbjct: 72  EEKFSSQNVGLTITVTPCWCY 92

>FUCI_ECOL6 (Q8FEE7) L-fucose isomerase (EC 5.3.1.25) (6-deoxy-L-galactose|
           isomerase) (FucIase)
          Length = 591

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 140 EEKCSKQNHGFTMTTDLCQCY 78
           EEK S QN G T+T   C CY
Sbjct: 72  EEKFSSQNVGLTITVTPCWCY 92

>FUCI_ECO57 (Q8X6R5) L-fucose isomerase (EC 5.3.1.25) (6-deoxy-L-galactose|
           isomerase) (FucIase)
          Length = 591

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 140 EEKCSKQNHGFTMTTDLCQCY 78
           EEK S QN G T+T   C CY
Sbjct: 72  EEKFSSQNVGLTITVTPCWCY 92

>GPA2_SCHPO (Q04665) Guanine nucleotide-binding protein alpha-2 subunit|
           (GP2-alpha)
          Length = 354

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 11/45 (24%), Positives = 25/45 (55%)
 Frame = -2

Query: 186 SISTSHALFYLYNLHGREVQQAKSWIYHDDRPLSVLFCIATEDVE 52
           S +  H    ++++ G+  ++ K WIY  +   S++FC++  D +
Sbjct: 186 SFTLDHLQIRMFDVGGQRTERRK-WIYCFENVNSIIFCVSLNDYD 229

>FUCI_SALTY (Q8ZMC6) L-fucose isomerase (EC 5.3.1.25) (6-deoxy-L-galactose|
           isomerase) (FucIase)
          Length = 591

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 140 EEKCSKQNHGFTMTTDLCQCY 78
           EEK S QN G T+T   C CY
Sbjct: 72  EEKFSSQNVGVTITVTPCWCY 92

>FUCI_SALTI (Q8Z429) L-fucose isomerase (EC 5.3.1.25) (6-deoxy-L-galactose|
           isomerase) (FucIase)
          Length = 591

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 140 EEKCSKQNHGFTMTTDLCQCY 78
           EEK S QN G T+T   C CY
Sbjct: 72  EEKFSSQNVGVTITVTPCWCY 92


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,349,654
Number of Sequences: 219361
Number of extensions: 552668
Number of successful extensions: 1652
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1652
length of database: 80,573,946
effective HSP length: 66
effective length of database: 66,096,120
effective search space used: 1586306880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)