ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags37l13 |
|---|---|
| Clone Library Name | barley_pub |
>TM9S2_MOUSE (P58021) Transmembrane 9 superfamily protein member 2 precursor| Length = 662 Score = 115 bits (289), Expect = 7e-26 Identities = 52/93 (55%), Positives = 66/93 (70%) Frame = -3 Query: 590 EITIVLCYFQLCSEDYHWWWRAYLTAGSSXXXXXXXXXXXXFNKLEITKLVSGILYFGYM 411 E TI+LCYF LC+EDYHW WR++LT+G + F+KL+IT S ILYFGY Sbjct: 570 EATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAIHYFFSKLQITGTASTILYFGYT 629 Query: 410 LIISYAFFVLTGTIGFYACFWFVRKIYASVKID 312 +I+ FF+ TGTIGF+ACFWFV KIY+ VK+D Sbjct: 630 MIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 662
>TM9S2_RAT (Q66HG5) Transmembrane 9 superfamily protein member 2 precursor| Length = 663 Score = 115 bits (289), Expect = 7e-26 Identities = 52/93 (55%), Positives = 66/93 (70%) Frame = -3 Query: 590 EITIVLCYFQLCSEDYHWWWRAYLTAGSSXXXXXXXXXXXXFNKLEITKLVSGILYFGYM 411 E TI+LCYF LC+EDYHW WR++LT+G + F+KL+IT S ILYFGY Sbjct: 571 EATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLVYAIHYFFSKLQITGTASTILYFGYT 630 Query: 410 LIISYAFFVLTGTIGFYACFWFVRKIYASVKID 312 +I+ FF+ TGTIGF+ACFWFV KIY+ VK+D Sbjct: 631 MIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663
>TM9S2_PONPY (Q5R8Y6) Transmembrane 9 superfamily protein member 2 precursor| Length = 663 Score = 115 bits (289), Expect = 7e-26 Identities = 52/93 (55%), Positives = 66/93 (70%) Frame = -3 Query: 590 EITIVLCYFQLCSEDYHWWWRAYLTAGSSXXXXXXXXXXXXFNKLEITKLVSGILYFGYM 411 E TI+LCYF LC+EDYHW WR++LT+G + F+KL+IT S ILYFGY Sbjct: 571 EATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQITGTASTILYFGYT 630 Query: 410 LIISYAFFVLTGTIGFYACFWFVRKIYASVKID 312 +I+ FF+ TGTIGF+ACFWFV KIY+ VK+D Sbjct: 631 MIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663
>TM9S2_HUMAN (Q99805) Transmembrane 9 superfamily protein member 2 precursor| (p76) Length = 663 Score = 115 bits (289), Expect = 7e-26 Identities = 52/93 (55%), Positives = 66/93 (70%) Frame = -3 Query: 590 EITIVLCYFQLCSEDYHWWWRAYLTAGSSXXXXXXXXXXXXFNKLEITKLVSGILYFGYM 411 E TI+LCYF LC+EDYHW WR++LT+G + F+KL+IT S ILYFGY Sbjct: 571 EATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQITGTASTILYFGYT 630 Query: 410 LIISYAFFVLTGTIGFYACFWFVRKIYASVKID 312 +I+ FF+ TGTIGF+ACFWFV KIY+ VK+D Sbjct: 631 MIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663
>TM9S4_HUMAN (Q92544) Transmembrane 9 superfamily protein member 4| Length = 625 Score = 110 bits (276), Expect = 2e-24 Identities = 48/93 (51%), Positives = 65/93 (69%) Frame = -3 Query: 590 EITIVLCYFQLCSEDYHWWWRAYLTAGSSXXXXXXXXXXXXFNKLEITKLVSGILYFGYM 411 +I+IV+ YFQLC+EDY WWWR +L +G S NKL+I + + +LYFGY Sbjct: 533 QISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYT 592 Query: 410 LIISYAFFVLTGTIGFYACFWFVRKIYASVKID 312 ++ +F++LTGTIGFYA + FVRKIYA+VKID Sbjct: 593 ALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 625
>TM9S1_RAT (Q66HF2) Transmembrane 9 superfamily protein member 1 precursor| Length = 589 Score = 81.6 bits (200), Expect = 2e-15 Identities = 35/92 (38%), Positives = 53/92 (57%) Frame = -3 Query: 587 ITIVLCYFQLCSEDYHWWWRAYLTAGSSXXXXXXXXXXXXFNKLEITKLVSGILYFGYML 408 I+I L YFQL EDY WWWR+ L+ GS+ + ++ V + +FGY L Sbjct: 498 ISIALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSL 557 Query: 407 IISYAFFVLTGTIGFYACFWFVRKIYASVKID 312 + Y FF++ GTI F++ F+R IY ++K+D Sbjct: 558 LTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 589
>TM9S1_PONPY (Q5R8F1) Transmembrane 9 superfamily protein member 1 precursor| Length = 606 Score = 81.6 bits (200), Expect = 2e-15 Identities = 35/92 (38%), Positives = 53/92 (57%) Frame = -3 Query: 587 ITIVLCYFQLCSEDYHWWWRAYLTAGSSXXXXXXXXXXXXFNKLEITKLVSGILYFGYML 408 I+I L YFQL EDY WWWR+ L+ GS+ + ++ V + +FGY L Sbjct: 515 ISIALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSL 574 Query: 407 IISYAFFVLTGTIGFYACFWFVRKIYASVKID 312 + Y FF++ GTI F++ F+R IY ++K+D Sbjct: 575 LTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 606
>TM9S1_MOUSE (Q9DBU0) Transmembrane 9 superfamily protein member 1 precursor| Length = 606 Score = 81.6 bits (200), Expect = 2e-15 Identities = 35/92 (38%), Positives = 53/92 (57%) Frame = -3 Query: 587 ITIVLCYFQLCSEDYHWWWRAYLTAGSSXXXXXXXXXXXXFNKLEITKLVSGILYFGYML 408 I+I L YFQL EDY WWWR+ L+ GS+ + ++ V + +FGY L Sbjct: 515 ISIALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSL 574 Query: 407 IISYAFFVLTGTIGFYACFWFVRKIYASVKID 312 + Y FF++ GTI F++ F+R IY ++K+D Sbjct: 575 LTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 606
>TM9S1_HUMAN (O15321) Transmembrane 9 superfamily protein member 1 precursor| (hMP70) Length = 606 Score = 81.6 bits (200), Expect = 2e-15 Identities = 35/92 (38%), Positives = 53/92 (57%) Frame = -3 Query: 587 ITIVLCYFQLCSEDYHWWWRAYLTAGSSXXXXXXXXXXXXFNKLEITKLVSGILYFGYML 408 I+I L YFQL EDY WWWR+ L+ GS+ + ++ V + +FGY L Sbjct: 515 ISIALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSL 574 Query: 407 IISYAFFVLTGTIGFYACFWFVRKIYASVKID 312 + Y FF++ GTI F++ F+R IY ++K+D Sbjct: 575 LTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 606
>TM9S3_MOUSE (Q9ET30) Transmembrane 9 superfamily protein member 3 precursor| Length = 587 Score = 70.9 bits (172), Expect = 3e-12 Identities = 37/92 (40%), Positives = 50/92 (54%) Frame = -3 Query: 587 ITIVLCYFQLCSEDYHWWWRAYLTAGSSXXXXXXXXXXXXFNKLEITKLVSGILYFGYML 408 +TIV YF L +EDY W W ++L+A S+ F K ++ L YFGYM Sbjct: 496 VTIVCTYFLLNAEDYRWQWTSFLSAASTAIYVYMYSFYYYFFKTKMYGLFQTSFYFGYMA 555 Query: 407 IISYAFFVLTGTIGFYACFWFVRKIYASVKID 312 + S A ++ G IG+ FVRKIY +VKID Sbjct: 556 VFSTALGIMCGAIGYMGTSAFVRKIYTNVKID 587
>TM9S3_HUMAN (Q9HD45) Transmembrane 9 superfamily protein member 3 precursor| (SM-11044-binding protein) (EP70-P-iso) Length = 589 Score = 70.9 bits (172), Expect = 3e-12 Identities = 37/92 (40%), Positives = 50/92 (54%) Frame = -3 Query: 587 ITIVLCYFQLCSEDYHWWWRAYLTAGSSXXXXXXXXXXXXFNKLEITKLVSGILYFGYML 408 +TIV YF L +EDY W W ++L+A S+ F K ++ L YFGYM Sbjct: 498 VTIVCTYFLLNAEDYRWQWTSFLSAASTAIYVYMYSFYYYFFKTKMYGLFQTSFYFGYMA 557 Query: 407 IISYAFFVLTGTIGFYACFWFVRKIYASVKID 312 + S A ++ G IG+ FVRKIY +VKID Sbjct: 558 VFSTALGIMCGAIGYMGTSAFVRKIYTNVKID 589
>EMP70_YEAST (P32802) Endosomal P24A protein precursor (70 kDa endomembrane| protein) (Pheromone alpha-factor transporter) (Acidic 24 kDa late endocytic intermediate component) Length = 667 Score = 66.2 bits (160), Expect = 7e-11 Identities = 31/92 (33%), Positives = 51/92 (55%) Frame = -3 Query: 587 ITIVLCYFQLCSEDYHWWWRAYLTAGSSXXXXXXXXXXXXFNKLEITKLVSGILYFGYML 408 +TI++ Y LC E++ W WR ++ G+ K ++ + +LY GY Sbjct: 577 VTILITYHSLCLENWKWQWRGFIIGGAGCALYVFIHSILFT-KFKLGGFTTIVLYVGYSS 635 Query: 407 IISYAFFVLTGTIGFYACFWFVRKIYASVKID 312 +IS ++TG+IGF + FVRKIY+S+K+D Sbjct: 636 VISLLCCLVTGSIGFISSMLFVRKIYSSIKVD 667
>TOP1_ECOLI (P06612) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| (Omega-protein) (Relaxing enzyme) (Untwisting enzyme) (Swivelase) Length = 865 Score = 30.4 bits (67), Expect = 4.0 Identities = 14/47 (29%), Positives = 24/47 (51%) Frame = +2 Query: 149 SGDSYSYQATHILPKPWNPISNPSSQHHV*YRKKTLYGICSRSRRET 289 SG++ + Q TH KP+ P++ +Q V +K Y + R + T Sbjct: 230 SGEALALQVTHQNDKPFRPVNKEQTQAAVSLLEKARYSVLEREDKPT 276
>DPO3A_THEAQ (Q9XDH5) DNA polymerase III alpha subunit (EC 2.7.7.7)| Length = 1220 Score = 30.4 bits (67), Expect = 4.0 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 7/66 (10%) Frame = +3 Query: 171 RLHIFYQNHGIPSQIPVLSTMYDIARKPCTGYALEADGKLILK-------VAISVDLHRS 329 R I QNHG+P Q V + + ARK G DG + K V +++ + Sbjct: 176 RFFIEIQNHGLPEQKKVNQVLKEFARKYGLGMVATNDGHYVRKEDARAHEVLLAIQSKTT 235 Query: 330 IDLPHK 347 +D P + Sbjct: 236 LDDPER 241
>YEU3_YEAST (P40071) Hypothetical protein YER113C precursor| Length = 706 Score = 29.3 bits (64), Expect = 8.9 Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 6/93 (6%) Frame = -3 Query: 590 EITIVLCYF--QLCSEDY----HWWWRAYLTAGSSXXXXXXXXXXXXFNKLEITKLVSGI 429 EI+I+ Y + C ED +W W+ + S F L I S + Sbjct: 608 EISIIGSYLLMRFCFEDKVVRNNWRWKCFEMGFSGGVYMELYSLYYIFAVLNIHGFSSIL 667 Query: 428 LYFGYMLIISYAFFVLTGTIGFYACFWFVRKIY 330 + Y LI + + G + + WF+ KIY Sbjct: 668 ISICYSLIFNVMCSLGLGALSYLTASWFINKIY 700
>TRUB_MYCGA (P59879) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA| pseudouridine 55 synthase) (Psi55 synthase) (tRNA-uridine isomerase) (tRNA pseudouridylate synthase) Length = 218 Score = 29.3 bits (64), Expect = 8.9 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 8/91 (8%) Frame = +3 Query: 3 VLRVRHKTNGTDMVNQDPKQY----RSTRYF*NYTRHANLRRVSNSLFNIREHPVILTPT 170 V+ +T +NQD KQY + + +Y R + R +N + I++ LT Sbjct: 53 VVATNKRTKELSQLNQDDKQYLVKLKFNTHTDSYDRLGKVIRTTNYVPEIKQLNDYLTSL 112 Query: 171 RLHIFYQNHGIPSQIPVLST----MYDIARK 251 H FYQ +P L Y +ARK Sbjct: 113 DNHSFYQ---LPPNFSALKVNGVRAYQLARK 140 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,329,138 Number of Sequences: 219361 Number of extensions: 1383800 Number of successful extensions: 3421 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3330 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3420 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5158951200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
