ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags37k18 |
|---|---|
| Clone Library Name | barley_pub |
>TM9S4_HUMAN (Q92544) Transmembrane 9 superfamily protein member 4| Length = 625 Score = 45.8 bits (107), Expect = 5e-05 Identities = 20/43 (46%), Positives = 29/43 (67%) Frame = -2 Query: 431 VSAMLYIGYSFLMAFAIMLATGTIGFLTSISFVHYLFASVKID 303 + ++LY GY+ LM + L TGTIGF + FV ++A+VKID Sbjct: 583 IPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 625
>EMP70_YEAST (P32802) Endosomal P24A protein precursor (70 kDa endomembrane| protein) (Pheromone alpha-factor transporter) (Acidic 24 kDa late endocytic intermediate component) Length = 667 Score = 45.1 bits (105), Expect = 8e-05 Identities = 18/45 (40%), Positives = 33/45 (73%) Frame = -2 Query: 437 GPVSAMLYIGYSFLMAFAIMLATGTIGFLTSISFVHYLFASVKID 303 G + +LY+GYS +++ L TG+IGF++S+ FV +++S+K+D Sbjct: 623 GFTTIVLYVGYSSVISLLCCLVTGSIGFISSMLFVRKIYSSIKVD 667
>TM9S2_MOUSE (P58021) Transmembrane 9 superfamily protein member 2 precursor| Length = 662 Score = 42.7 bits (99), Expect = 4e-04 Identities = 19/45 (42%), Positives = 26/45 (57%) Frame = -2 Query: 437 GPVSAMLYIGYSFLMAFAIMLATGTIGFLTSISFVHYLFASVKID 303 G S +LY GY+ +M L TGTIGF FV +++ VK+D Sbjct: 618 GTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 662
>TM9S2_RAT (Q66HG5) Transmembrane 9 superfamily protein member 2 precursor| Length = 663 Score = 42.7 bits (99), Expect = 4e-04 Identities = 19/45 (42%), Positives = 26/45 (57%) Frame = -2 Query: 437 GPVSAMLYIGYSFLMAFAIMLATGTIGFLTSISFVHYLFASVKID 303 G S +LY GY+ +M L TGTIGF FV +++ VK+D Sbjct: 619 GTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663
>TM9S2_PONPY (Q5R8Y6) Transmembrane 9 superfamily protein member 2 precursor| Length = 663 Score = 42.7 bits (99), Expect = 4e-04 Identities = 19/45 (42%), Positives = 26/45 (57%) Frame = -2 Query: 437 GPVSAMLYIGYSFLMAFAIMLATGTIGFLTSISFVHYLFASVKID 303 G S +LY GY+ +M L TGTIGF FV +++ VK+D Sbjct: 619 GTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663
>TM9S2_HUMAN (Q99805) Transmembrane 9 superfamily protein member 2 precursor| (p76) Length = 663 Score = 42.7 bits (99), Expect = 4e-04 Identities = 19/45 (42%), Positives = 26/45 (57%) Frame = -2 Query: 437 GPVSAMLYIGYSFLMAFAIMLATGTIGFLTSISFVHYLFASVKID 303 G S +LY GY+ +M L TGTIGF FV +++ VK+D Sbjct: 619 GTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663
>TM9S1_RAT (Q66HF2) Transmembrane 9 superfamily protein member 1 precursor| Length = 589 Score = 42.4 bits (98), Expect = 5e-04 Identities = 16/45 (35%), Positives = 27/45 (60%) Frame = -2 Query: 437 GPVSAMLYIGYSFLMAFAIMLATGTIGFLTSISFVHYLFASVKID 303 G V + + GYS L + L GTI F +S+ F+ Y++ ++K+D Sbjct: 545 GAVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 589
>TM9S1_PONPY (Q5R8F1) Transmembrane 9 superfamily protein member 1 precursor| Length = 606 Score = 42.4 bits (98), Expect = 5e-04 Identities = 16/45 (35%), Positives = 27/45 (60%) Frame = -2 Query: 437 GPVSAMLYIGYSFLMAFAIMLATGTIGFLTSISFVHYLFASVKID 303 G V + + GYS L + L GTI F +S+ F+ Y++ ++K+D Sbjct: 562 GAVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 606
>TM9S1_MOUSE (Q9DBU0) Transmembrane 9 superfamily protein member 1 precursor| Length = 606 Score = 42.4 bits (98), Expect = 5e-04 Identities = 16/45 (35%), Positives = 27/45 (60%) Frame = -2 Query: 437 GPVSAMLYIGYSFLMAFAIMLATGTIGFLTSISFVHYLFASVKID 303 G V + + GYS L + L GTI F +S+ F+ Y++ ++K+D Sbjct: 562 GAVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 606
>TM9S1_HUMAN (O15321) Transmembrane 9 superfamily protein member 1 precursor| (hMP70) Length = 606 Score = 42.4 bits (98), Expect = 5e-04 Identities = 16/45 (35%), Positives = 27/45 (60%) Frame = -2 Query: 437 GPVSAMLYIGYSFLMAFAIMLATGTIGFLTSISFVHYLFASVKID 303 G V + + GYS L + L GTI F +S+ F+ Y++ ++K+D Sbjct: 562 GAVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 606
>TM9S3_MOUSE (Q9ET30) Transmembrane 9 superfamily protein member 3 precursor| Length = 587 Score = 32.7 bits (73), Expect = 0.40 Identities = 14/45 (31%), Positives = 25/45 (55%) Frame = -2 Query: 437 GPVSAMLYIGYSFLMAFAIMLATGTIGFLTSISFVHYLFASVKID 303 G Y GY + + A+ + G IG++ + +FV ++ +VKID Sbjct: 543 GLFQTSFYFGYMAVFSTALGIMCGAIGYMGTSAFVRKIYTNVKID 587
>TM9S3_HUMAN (Q9HD45) Transmembrane 9 superfamily protein member 3 precursor| (SM-11044-binding protein) (EP70-P-iso) Length = 589 Score = 32.7 bits (73), Expect = 0.40 Identities = 14/45 (31%), Positives = 25/45 (55%) Frame = -2 Query: 437 GPVSAMLYIGYSFLMAFAIMLATGTIGFLTSISFVHYLFASVKID 303 G Y GY + + A+ + G IG++ + +FV ++ +VKID Sbjct: 545 GLFQTSFYFGYMAVFSTALGIMCGAIGYMGTSAFVRKIYTNVKID 589
>UGPE_ECOLI (P10906) sn-glycerol-3-phosphate transport system permease protein| ugpE Length = 281 Score = 29.3 bits (64), Expect = 4.4 Identities = 14/41 (34%), Positives = 24/41 (58%) Frame = -2 Query: 404 SFLMAFAIMLATGTIGFLTSISFVHYLFASVKID*WMVAIS 282 SF+MAF+I L T+ L++ + V + F + WM+ I+ Sbjct: 80 SFVMAFSITLGKITVSMLSAFAIVWFRFPLRNLFFWMIFIT 120
>PRAM5_HUMAN (Q5TYX0) PRAME family member 5| Length = 476 Score = 28.5 bits (62), Expect = 7.6 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = -1 Query: 405 LIPHGIRDHARHWNHRLLDLNILCALPLRVCEDRLMDGCYIN 280 L+ G+ H R W ++LDL +C V + + GC++N Sbjct: 88 LLTQGV--HPRRWKLQVLDLQDVCENFWMVWSEAMAHGCFLN 127
>PRAM6_HUMAN (Q5VXH4) PRAME family member 6| Length = 476 Score = 28.1 bits (61), Expect = 9.9 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = -1 Query: 405 LIPHGIRDHARHWNHRLLDLNILCALPLRVCEDRLMDGCYIN 280 L+ G+ H R W ++LDL +C V + + GC++N Sbjct: 88 LLTQGV--HPRRWKLQVLDLQDVCENFWMVWSEAMARGCFLN 127
>YAJR_ECOLI (P77726) Inner membrane transport protein yajR| Length = 454 Score = 28.1 bits (61), Expect = 9.9 Identities = 19/47 (40%), Positives = 25/47 (53%) Frame = -2 Query: 425 AMLYIGYSFLMAFAIMLATGTIGFLTSISFVHYLFASVKID*WMVAI 285 AM +IG SF + FAI + G I +T +H LF WM+AI Sbjct: 136 AMAFIGVSFGITFAIAMVLGPI--ITHKLGLHALF-------WMIAI 173 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,273,978 Number of Sequences: 219361 Number of extensions: 1095062 Number of successful extensions: 2475 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2446 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2475 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
