| Clone Name | rbags37k18 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_483157.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2616 Score = 119 bits (60), Expect = 8e-24 Identities = 120/140 (85%) Strand = Plus / Minus Query: 298 catcaatcgatcttcacagacgcgaagaggtagtgcacaaaggatattgaggtcaagaag 357 ||||||||||||||||| || | ||| || |||||||| ||||| | ||| ||||| || Sbjct: 2141 catcaatcgatcttcacggatgagaacagatagtgcacgaaggagaatgatgtcaaaaat 2082 Query: 358 ccgatggttccagtggcgagcatgatcgcgaatgccatgaggaatgagtagccgatgtag 417 || |||||||||||||| |||||||| || |||||||||||||||||||| || | ||| Sbjct: 2081 ccaatggttccagtggccagcatgattgcaaatgccatgaggaatgagtaaccaaggtaa 2022 Query: 418 agcattgcagagacaggccc 437 ||||| |||||||||||||| Sbjct: 2021 agcatggcagagacaggccc 2002
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 119 bits (60), Expect = 8e-24 Identities = 120/140 (85%) Strand = Plus / Plus Query: 298 catcaatcgatcttcacagacgcgaagaggtagtgcacaaaggatattgaggtcaagaag 357 ||||||||||||||||| || | ||| || |||||||| ||||| | ||| ||||| || Sbjct: 24530919 catcaatcgatcttcacggatgagaacagatagtgcacgaaggagaatgatgtcaaaaat 24530978 Query: 358 ccgatggttccagtggcgagcatgatcgcgaatgccatgaggaatgagtagccgatgtag 417 || |||||||||||||| |||||||| || |||||||||||||||||||| || | ||| Sbjct: 24530979 ccaatggttccagtggccagcatgattgcaaatgccatgaggaatgagtaaccaaggtaa 24531038 Query: 418 agcattgcagagacaggccc 437 ||||| |||||||||||||| Sbjct: 24531039 agcatggcagagacaggccc 24531058
>dbj|AP000364.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0026F07 Length = 137354 Score = 119 bits (60), Expect = 8e-24 Identities = 120/140 (85%) Strand = Plus / Plus Query: 298 catcaatcgatcttcacagacgcgaagaggtagtgcacaaaggatattgaggtcaagaag 357 ||||||||||||||||| || | ||| || |||||||| ||||| | ||| ||||| || Sbjct: 39179 catcaatcgatcttcacggatgagaacagatagtgcacgaaggagaatgatgtcaaaaat 39238 Query: 358 ccgatggttccagtggcgagcatgatcgcgaatgccatgaggaatgagtagccgatgtag 417 || |||||||||||||| |||||||| || |||||||||||||||||||| || | ||| Sbjct: 39239 ccaatggttccagtggccagcatgattgcaaatgccatgaggaatgagtaaccaaggtaa 39298 Query: 418 agcattgcagagacaggccc 437 ||||| |||||||||||||| Sbjct: 39299 agcatggcagagacaggccc 39318
>dbj|AP005148.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1142B04 Length = 161964 Score = 119 bits (60), Expect = 8e-24 Identities = 120/140 (85%) Strand = Plus / Plus Query: 298 catcaatcgatcttcacagacgcgaagaggtagtgcacaaaggatattgaggtcaagaag 357 ||||||||||||||||| || | ||| || |||||||| ||||| | ||| ||||| || Sbjct: 146635 catcaatcgatcttcacggatgagaacagatagtgcacgaaggagaatgatgtcaaaaat 146694 Query: 358 ccgatggttccagtggcgagcatgatcgcgaatgccatgaggaatgagtagccgatgtag 417 || |||||||||||||| |||||||| || |||||||||||||||||||| || | ||| Sbjct: 146695 ccaatggttccagtggccagcatgattgcaaatgccatgaggaatgagtaaccaaggtaa 146754 Query: 418 agcattgcagagacaggccc 437 ||||| |||||||||||||| Sbjct: 146755 agcatggcagagacaggccc 146774
>dbj|AK102663.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101K01, full insert sequence Length = 2616 Score = 119 bits (60), Expect = 8e-24 Identities = 120/140 (85%) Strand = Plus / Minus Query: 298 catcaatcgatcttcacagacgcgaagaggtagtgcacaaaggatattgaggtcaagaag 357 ||||||||||||||||| || | ||| || |||||||| ||||| | ||| ||||| || Sbjct: 2141 catcaatcgatcttcacggatgagaacagatagtgcacgaaggagaatgatgtcaaaaat 2082 Query: 358 ccgatggttccagtggcgagcatgatcgcgaatgccatgaggaatgagtagccgatgtag 417 || |||||||||||||| |||||||| || |||||||||||||||||||| || | ||| Sbjct: 2081 ccaatggttccagtggccagcatgattgcaaatgccatgaggaatgagtaaccaaggtaa 2022 Query: 418 agcattgcagagacaggccc 437 ||||| |||||||||||||| Sbjct: 2021 agcatggcagagacaggccc 2002
>ref|NM_117335.2| Arabidopsis thaliana transporter AT4G12650 mRNA, complete cds Length = 1813 Score = 60.0 bits (30), Expect = 6e-06 Identities = 66/78 (84%) Strand = Plus / Minus Query: 354 gaagccgatggttccagtggcgagcatgatcgcgaatgccatgaggaatgagtagccgat 413 |||||| ||||||||||||||||||||||| || | |||||| || | |||||||| || Sbjct: 1530 gaagccaatggttccagtggcgagcatgattgcaattgccataagcagagagtagccaat 1471 Query: 414 gtagagcattgcagagac 431 ||| ||||| || ||||| Sbjct: 1470 gtaaagcatagctgagac 1453
>emb|AL161534.2|ATCHRIV34 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 34 Length = 196107 Score = 60.0 bits (30), Expect = 6e-06 Identities = 66/78 (84%) Strand = Plus / Plus Query: 354 gaagccgatggttccagtggcgagcatgatcgcgaatgccatgaggaatgagtagccgat 413 |||||| ||||||||||||||||||||||| || | |||||| || | |||||||| || Sbjct: 140388 gaagccaatggttccagtggcgagcatgattgcaattgccataagcagagagtagccaat 140447 Query: 414 gtagagcattgcagagac 431 ||| ||||| || ||||| Sbjct: 140448 gtaaagcatagctgagac 140465
>emb|AL049730.2|ATT1P17 Arabidopsis thaliana DNA chromosome 4, BAC clone T1P17 (ESSA project) Length = 137519 Score = 60.0 bits (30), Expect = 6e-06 Identities = 66/78 (84%) Strand = Plus / Plus Query: 354 gaagccgatggttccagtggcgagcatgatcgcgaatgccatgaggaatgagtagccgat 413 |||||| ||||||||||||||||||||||| || | |||||| || | |||||||| || Sbjct: 135856 gaagccaatggttccagtggcgagcatgattgcaattgccataagcagagagtagccaat 135915 Query: 414 gtagagcattgcagagac 431 ||| ||||| || ||||| Sbjct: 135916 gtaaagcatagctgagac 135933
>dbj|AK176134.1| Arabidopsis thaliana mRNA for putative protein, partial cds, clone: RAFL22-94-G13 Length = 922 Score = 60.0 bits (30), Expect = 6e-06 Identities = 66/78 (84%) Strand = Plus / Minus Query: 354 gaagccgatggttccagtggcgagcatgatcgcgaatgccatgaggaatgagtagccgat 413 |||||| ||||||||||||||||||||||| || | |||||| || | |||||||| || Sbjct: 630 gaagccaatggttccagtggcgagcatgattgcaattgccataagcagagagtagccaat 571 Query: 414 gtagagcattgcagagac 431 ||| ||||| || ||||| Sbjct: 570 gtaaagcatagctgagac 553
>dbj|AK175992.1| Arabidopsis thaliana mRNA for putative protein, partial cds, clone: RAFL22-69-A01 Length = 1126 Score = 60.0 bits (30), Expect = 6e-06 Identities = 66/78 (84%) Strand = Plus / Minus Query: 354 gaagccgatggttccagtggcgagcatgatcgcgaatgccatgaggaatgagtagccgat 413 |||||| ||||||||||||||||||||||| || | |||||| || | |||||||| || Sbjct: 934 gaagccaatggttccagtggcgagcatgattgcaattgccataagcagagagtagccaat 875 Query: 414 gtagagcattgcagagac 431 ||| ||||| || ||||| Sbjct: 874 gtaaagcatagctgagac 857
>dbj|AK175697.1| Arabidopsis thaliana mRNA for putative protein, partial cds, clone: RAFL22-22-N08 Length = 922 Score = 60.0 bits (30), Expect = 6e-06 Identities = 66/78 (84%) Strand = Plus / Minus Query: 354 gaagccgatggttccagtggcgagcatgatcgcgaatgccatgaggaatgagtagccgat 413 |||||| ||||||||||||||||||||||| || | |||||| || | |||||||| || Sbjct: 630 gaagccaatggttccagtggcgagcatgattgcaattgccataagcagagagtagccaat 571 Query: 414 gtagagcattgcagagac 431 ||| ||||| || ||||| Sbjct: 570 gtaaagcatagctgagac 553
>gb|AC123803.4| Mus musculus BAC clone RP24-492I15 from chromosome 10, complete sequence Length = 169964 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 282 tgatatagcaaccatccatcaatcgatct 310 |||||||||||||||||||| ||| |||| Sbjct: 99986 tgatatagcaaccatccatctatccatct 100014
>gb|AC103740.2| Homo sapiens chromosome 15, clone RP11-1069G10, complete sequence Length = 182071 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 248 acatacttttagcaatacaga 268 ||||||||||||||||||||| Sbjct: 97599 acatacttttagcaatacaga 97579
>gb|AF282403.1|AF282403 Cucumis sativus clone U63 mitochondrial genomic sequence Length = 2459 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 335 caaaggatattgaggtcaaga 355 ||||||||||||||||||||| Sbjct: 1819 caaaggatattgaggtcaaga 1839
>emb|AL031803.1|HS27C10 Human DNA sequence from clone RP6-27C10 on chromosome Xp11.4-21.3 Contains GSSs, complete sequence Length = 52358 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 ttgaacaaccaagctacatt 152 |||||||||||||||||||| Sbjct: 29860 ttgaacaaccaagctacatt 29879
>emb|AL589863.11| Human DNA sequence from clone RP11-310J24 on chromosome 10, complete sequence Length = 168231 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 389 atgccatgaggaatgagtag 408 |||||||||||||||||||| Sbjct: 59659 atgccatgaggaatgagtag 59640
>gb|AF015722.3| Homo sapiens chromosome 21 clone cosmid clone Q30A10 map 21q22.2, complete sequence Length = 41176 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 atatggtttgcagtatctat 83 |||||||||||||||||||| Sbjct: 21145 atatggtttgcagtatctat 21126
>gb|AF015720.2|AF015720 Homo sapiens chromosome 21 clone PAC clone P169K17 map 21q22.2, complete sequence Length = 179544 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 atatggtttgcagtatctat 83 |||||||||||||||||||| Sbjct: 3936 atatggtttgcagtatctat 3917
>gb|AC068999.15|AC068999 Homo sapiens chromosome 18 clone RP11-70G19, complete sequence Length = 194813 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 tggttccagtggcgagcatg 381 |||||||||||||||||||| Sbjct: 33829 tggttccagtggcgagcatg 33810
>dbj|BS000197.1| Pan troglodytes chromosome 22 clone:PTB-108M20, map 22, complete sequences Length = 192863 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 atatggtttgcagtatctat 83 |||||||||||||||||||| Sbjct: 162689 atatggtttgcagtatctat 162670
>dbj|AB017064.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDN11 Length = 83373 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 tcaacctctactaaaaacaa 190 |||||||||||||||||||| Sbjct: 69451 tcaacctctactaaaaacaa 69432
>emb|AJ229041.1|HS229041 Homo sapiens 959 kb contig between AML1 and CBR1 on chromosome 21q22; segment 1/3 Length = 323000 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 atatggtttgcagtatctat 83 |||||||||||||||||||| Sbjct: 305541 atatggtttgcagtatctat 305560
>emb|AL163268.2|HS21C068 Homo sapiens chromosome 21 segment HS21C068 Length = 340000 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 atatggtttgcagtatctat 83 |||||||||||||||||||| Sbjct: 216486 atatggtttgcagtatctat 216467
>dbj|AP003387.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-700F9, complete sequence Length = 185017 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 172 caacctctactaaaaacaactgta 195 ||||||| |||||||||||||||| Sbjct: 82144 caacctccactaaaaacaactgta 82121
>dbj|AP005130.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-168H23, complete sequence Length = 181276 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 tggttccagtggcgagcatg 381 |||||||||||||||||||| Sbjct: 168892 tggttccagtggcgagcatg 168873
>emb|CR376779.18| Zebrafish DNA sequence from clone CH211-236N18 in linkage group 7, complete sequence Length = 177160 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 acaactgtagttgatcaaaa 206 |||||||||||||||||||| Sbjct: 125462 acaactgtagttgatcaaaa 125443 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,918,008 Number of Sequences: 3902068 Number of extensions: 3918008 Number of successful extensions: 83226 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83148 Number of HSP's gapped (non-prelim): 78 length of query: 438 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 416 effective length of database: 17,147,199,772 effective search space: 7133235105152 effective search space used: 7133235105152 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)