ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags37k18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_483157.1| Oryza sativa (japonica cultivar-group), mRNA 119 8e-24
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 119 8e-24
3dbj|AP000364.1| Oryza sativa (japonica cultivar-group) genomic D... 119 8e-24
4dbj|AP005148.3| Oryza sativa (japonica cultivar-group) genomic D... 119 8e-24
5dbj|AK102663.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 8e-24
6ref|NM_117335.2| Arabidopsis thaliana transporter AT4G12650 mRNA... 60 6e-06
7emb|AL161534.2|ATCHRIV34 Arabidopsis thaliana DNA chromosome 4, ... 60 6e-06
8emb|AL049730.2|ATT1P17 Arabidopsis thaliana DNA chromosome 4, BA... 60 6e-06
9dbj|AK176134.1| Arabidopsis thaliana mRNA for putative protein, ... 60 6e-06
10dbj|AK175992.1| Arabidopsis thaliana mRNA for putative protein, ... 60 6e-06
11dbj|AK175697.1| Arabidopsis thaliana mRNA for putative protein, ... 60 6e-06
12gb|AC123803.4| Mus musculus BAC clone RP24-492I15 from chromosom... 42 1.5
13gb|AC103740.2| Homo sapiens chromosome 15, clone RP11-1069G10, c... 42 1.5
14gb|AF282403.1|AF282403 Cucumis sativus clone U63 mitochondrial g... 42 1.5
15emb|AL031803.1|HS27C10 Human DNA sequence from clone RP6-27C10 o... 40 5.9
16emb|AL589863.11| Human DNA sequence from clone RP11-310J24 on ch... 40 5.9
17gb|AF015722.3| Homo sapiens chromosome 21 clone cosmid clone Q30... 40 5.9
18gb|AF015720.2|AF015720 Homo sapiens chromosome 21 clone PAC clon... 40 5.9
19gb|AC068999.15|AC068999 Homo sapiens chromosome 18 clone RP11-70... 40 5.9
20dbj|BS000197.1| Pan troglodytes chromosome 22 clone:PTB-108M20, ... 40 5.9
21dbj|AB017064.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 5.9
22emb|AJ229041.1|HS229041 Homo sapiens 959 kb contig between AML1 ... 40 5.9
23emb|AL163268.2|HS21C068 Homo sapiens chromosome 21 segment HS21C068 40 5.9
24dbj|AP003387.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 5.9
25dbj|AP005130.4| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 5.9
26emb|CR376779.18| Zebrafish DNA sequence from clone CH211-236N18 ... 40 5.9

>ref|XM_483157.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2616

 Score =  119 bits (60), Expect = 8e-24
 Identities = 120/140 (85%)
 Strand = Plus / Minus

                                                                        
Query: 298  catcaatcgatcttcacagacgcgaagaggtagtgcacaaaggatattgaggtcaagaag 357
            ||||||||||||||||| || | ||| || |||||||| ||||| | ||| ||||| || 
Sbjct: 2141 catcaatcgatcttcacggatgagaacagatagtgcacgaaggagaatgatgtcaaaaat 2082

                                                                        
Query: 358  ccgatggttccagtggcgagcatgatcgcgaatgccatgaggaatgagtagccgatgtag 417
            || |||||||||||||| |||||||| || |||||||||||||||||||| || | ||| 
Sbjct: 2081 ccaatggttccagtggccagcatgattgcaaatgccatgaggaatgagtaaccaaggtaa 2022

                                
Query: 418  agcattgcagagacaggccc 437
            ||||| ||||||||||||||
Sbjct: 2021 agcatggcagagacaggccc 2002



to top

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  119 bits (60), Expect = 8e-24
 Identities = 120/140 (85%)
 Strand = Plus / Plus

                                                                            
Query: 298      catcaatcgatcttcacagacgcgaagaggtagtgcacaaaggatattgaggtcaagaag 357
                ||||||||||||||||| || | ||| || |||||||| ||||| | ||| ||||| || 
Sbjct: 24530919 catcaatcgatcttcacggatgagaacagatagtgcacgaaggagaatgatgtcaaaaat 24530978

                                                                            
Query: 358      ccgatggttccagtggcgagcatgatcgcgaatgccatgaggaatgagtagccgatgtag 417
                || |||||||||||||| |||||||| || |||||||||||||||||||| || | ||| 
Sbjct: 24530979 ccaatggttccagtggccagcatgattgcaaatgccatgaggaatgagtaaccaaggtaa 24531038

                                    
Query: 418      agcattgcagagacaggccc 437
                ||||| ||||||||||||||
Sbjct: 24531039 agcatggcagagacaggccc 24531058



to top

>dbj|AP000364.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0026F07
          Length = 137354

 Score =  119 bits (60), Expect = 8e-24
 Identities = 120/140 (85%)
 Strand = Plus / Plus

                                                                         
Query: 298   catcaatcgatcttcacagacgcgaagaggtagtgcacaaaggatattgaggtcaagaag 357
             ||||||||||||||||| || | ||| || |||||||| ||||| | ||| ||||| || 
Sbjct: 39179 catcaatcgatcttcacggatgagaacagatagtgcacgaaggagaatgatgtcaaaaat 39238

                                                                         
Query: 358   ccgatggttccagtggcgagcatgatcgcgaatgccatgaggaatgagtagccgatgtag 417
             || |||||||||||||| |||||||| || |||||||||||||||||||| || | ||| 
Sbjct: 39239 ccaatggttccagtggccagcatgattgcaaatgccatgaggaatgagtaaccaaggtaa 39298

                                 
Query: 418   agcattgcagagacaggccc 437
             ||||| ||||||||||||||
Sbjct: 39299 agcatggcagagacaggccc 39318



to top

>dbj|AP005148.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:B1142B04
          Length = 161964

 Score =  119 bits (60), Expect = 8e-24
 Identities = 120/140 (85%)
 Strand = Plus / Plus

                                                                          
Query: 298    catcaatcgatcttcacagacgcgaagaggtagtgcacaaaggatattgaggtcaagaag 357
              ||||||||||||||||| || | ||| || |||||||| ||||| | ||| ||||| || 
Sbjct: 146635 catcaatcgatcttcacggatgagaacagatagtgcacgaaggagaatgatgtcaaaaat 146694

                                                                          
Query: 358    ccgatggttccagtggcgagcatgatcgcgaatgccatgaggaatgagtagccgatgtag 417
              || |||||||||||||| |||||||| || |||||||||||||||||||| || | ||| 
Sbjct: 146695 ccaatggttccagtggccagcatgattgcaaatgccatgaggaatgagtaaccaaggtaa 146754

                                  
Query: 418    agcattgcagagacaggccc 437
              ||||| ||||||||||||||
Sbjct: 146755 agcatggcagagacaggccc 146774



to top

>dbj|AK102663.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101K01, full
            insert sequence
          Length = 2616

 Score =  119 bits (60), Expect = 8e-24
 Identities = 120/140 (85%)
 Strand = Plus / Minus

                                                                        
Query: 298  catcaatcgatcttcacagacgcgaagaggtagtgcacaaaggatattgaggtcaagaag 357
            ||||||||||||||||| || | ||| || |||||||| ||||| | ||| ||||| || 
Sbjct: 2141 catcaatcgatcttcacggatgagaacagatagtgcacgaaggagaatgatgtcaaaaat 2082

                                                                        
Query: 358  ccgatggttccagtggcgagcatgatcgcgaatgccatgaggaatgagtagccgatgtag 417
            || |||||||||||||| |||||||| || |||||||||||||||||||| || | ||| 
Sbjct: 2081 ccaatggttccagtggccagcatgattgcaaatgccatgaggaatgagtaaccaaggtaa 2022

                                
Query: 418  agcattgcagagacaggccc 437
            ||||| ||||||||||||||
Sbjct: 2021 agcatggcagagacaggccc 2002



to top

>ref|NM_117335.2| Arabidopsis thaliana transporter AT4G12650 mRNA, complete cds
          Length = 1813

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 66/78 (84%)
 Strand = Plus / Minus

                                                                        
Query: 354  gaagccgatggttccagtggcgagcatgatcgcgaatgccatgaggaatgagtagccgat 413
            |||||| ||||||||||||||||||||||| || | |||||| || |  |||||||| ||
Sbjct: 1530 gaagccaatggttccagtggcgagcatgattgcaattgccataagcagagagtagccaat 1471

                              
Query: 414  gtagagcattgcagagac 431
            ||| ||||| || |||||
Sbjct: 1470 gtaaagcatagctgagac 1453



to top

>emb|AL161534.2|ATCHRIV34 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 34
          Length = 196107

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 66/78 (84%)
 Strand = Plus / Plus

                                                                          
Query: 354    gaagccgatggttccagtggcgagcatgatcgcgaatgccatgaggaatgagtagccgat 413
              |||||| ||||||||||||||||||||||| || | |||||| || |  |||||||| ||
Sbjct: 140388 gaagccaatggttccagtggcgagcatgattgcaattgccataagcagagagtagccaat 140447

                                
Query: 414    gtagagcattgcagagac 431
              ||| ||||| || |||||
Sbjct: 140448 gtaaagcatagctgagac 140465



to top

>emb|AL049730.2|ATT1P17 Arabidopsis thaliana DNA chromosome 4, BAC clone T1P17 (ESSA project)
          Length = 137519

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 66/78 (84%)
 Strand = Plus / Plus

                                                                          
Query: 354    gaagccgatggttccagtggcgagcatgatcgcgaatgccatgaggaatgagtagccgat 413
              |||||| ||||||||||||||||||||||| || | |||||| || |  |||||||| ||
Sbjct: 135856 gaagccaatggttccagtggcgagcatgattgcaattgccataagcagagagtagccaat 135915

                                
Query: 414    gtagagcattgcagagac 431
              ||| ||||| || |||||
Sbjct: 135916 gtaaagcatagctgagac 135933



to top

>dbj|AK176134.1| Arabidopsis thaliana mRNA for putative protein, partial cds, clone:
           RAFL22-94-G13
          Length = 922

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 66/78 (84%)
 Strand = Plus / Minus

                                                                       
Query: 354 gaagccgatggttccagtggcgagcatgatcgcgaatgccatgaggaatgagtagccgat 413
           |||||| ||||||||||||||||||||||| || | |||||| || |  |||||||| ||
Sbjct: 630 gaagccaatggttccagtggcgagcatgattgcaattgccataagcagagagtagccaat 571

                             
Query: 414 gtagagcattgcagagac 431
           ||| ||||| || |||||
Sbjct: 570 gtaaagcatagctgagac 553



to top

>dbj|AK175992.1| Arabidopsis thaliana mRNA for putative protein, partial cds, clone:
           RAFL22-69-A01
          Length = 1126

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 66/78 (84%)
 Strand = Plus / Minus

                                                                       
Query: 354 gaagccgatggttccagtggcgagcatgatcgcgaatgccatgaggaatgagtagccgat 413
           |||||| ||||||||||||||||||||||| || | |||||| || |  |||||||| ||
Sbjct: 934 gaagccaatggttccagtggcgagcatgattgcaattgccataagcagagagtagccaat 875

                             
Query: 414 gtagagcattgcagagac 431
           ||| ||||| || |||||
Sbjct: 874 gtaaagcatagctgagac 857



to top

>dbj|AK175697.1| Arabidopsis thaliana mRNA for putative protein, partial cds, clone:
           RAFL22-22-N08
          Length = 922

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 66/78 (84%)
 Strand = Plus / Minus

                                                                       
Query: 354 gaagccgatggttccagtggcgagcatgatcgcgaatgccatgaggaatgagtagccgat 413
           |||||| ||||||||||||||||||||||| || | |||||| || |  |||||||| ||
Sbjct: 630 gaagccaatggttccagtggcgagcatgattgcaattgccataagcagagagtagccaat 571

                             
Query: 414 gtagagcattgcagagac 431
           ||| ||||| || |||||
Sbjct: 570 gtaaagcatagctgagac 553



to top

>gb|AC123803.4| Mus musculus BAC clone RP24-492I15 from chromosome 10, complete sequence
          Length = 169964

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 282    tgatatagcaaccatccatcaatcgatct 310
              |||||||||||||||||||| ||| ||||
Sbjct: 99986  tgatatagcaaccatccatctatccatct 100014



to top

>gb|AC103740.2| Homo sapiens chromosome 15, clone RP11-1069G10, complete sequence
          Length = 182071

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 248   acatacttttagcaatacaga 268
             |||||||||||||||||||||
Sbjct: 97599 acatacttttagcaatacaga 97579



to top

>gb|AF282403.1|AF282403 Cucumis sativus clone U63 mitochondrial genomic sequence
          Length = 2459

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 335  caaaggatattgaggtcaaga 355
            |||||||||||||||||||||
Sbjct: 1819 caaaggatattgaggtcaaga 1839



to top

>emb|AL031803.1|HS27C10 Human DNA sequence from clone RP6-27C10 on chromosome Xp11.4-21.3
             Contains GSSs, complete sequence
          Length = 52358

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 133   ttgaacaaccaagctacatt 152
             ||||||||||||||||||||
Sbjct: 29860 ttgaacaaccaagctacatt 29879



to top

>emb|AL589863.11| Human DNA sequence from clone RP11-310J24 on chromosome 10, complete
             sequence
          Length = 168231

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 389   atgccatgaggaatgagtag 408
             ||||||||||||||||||||
Sbjct: 59659 atgccatgaggaatgagtag 59640



to top

>gb|AF015722.3| Homo sapiens chromosome 21 clone cosmid clone Q30A10 map 21q22.2,
             complete sequence
          Length = 41176

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    atatggtttgcagtatctat 83
             ||||||||||||||||||||
Sbjct: 21145 atatggtttgcagtatctat 21126



to top

>gb|AF015720.2|AF015720 Homo sapiens chromosome 21 clone PAC clone P169K17 map 21q22.2,
            complete sequence
          Length = 179544

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 64   atatggtttgcagtatctat 83
            ||||||||||||||||||||
Sbjct: 3936 atatggtttgcagtatctat 3917



to top

>gb|AC068999.15|AC068999 Homo sapiens chromosome 18 clone RP11-70G19, complete sequence
          Length = 194813

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 362   tggttccagtggcgagcatg 381
             ||||||||||||||||||||
Sbjct: 33829 tggttccagtggcgagcatg 33810



to top

>dbj|BS000197.1| Pan troglodytes chromosome 22 clone:PTB-108M20, map 22, complete
              sequences
          Length = 192863

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 64     atatggtttgcagtatctat 83
              ||||||||||||||||||||
Sbjct: 162689 atatggtttgcagtatctat 162670



to top

>dbj|AB017064.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDN11
          Length = 83373

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 171   tcaacctctactaaaaacaa 190
             ||||||||||||||||||||
Sbjct: 69451 tcaacctctactaaaaacaa 69432



to top

>emb|AJ229041.1|HS229041 Homo sapiens 959 kb contig between AML1 and CBR1 on chromosome 21q22;
              segment 1/3
          Length = 323000

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 64     atatggtttgcagtatctat 83
              ||||||||||||||||||||
Sbjct: 305541 atatggtttgcagtatctat 305560



to top

>emb|AL163268.2|HS21C068 Homo sapiens chromosome 21 segment HS21C068
          Length = 340000

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 64     atatggtttgcagtatctat 83
              ||||||||||||||||||||
Sbjct: 216486 atatggtttgcagtatctat 216467



to top

>dbj|AP003387.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-700F9, complete
             sequence
          Length = 185017

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 172   caacctctactaaaaacaactgta 195
             ||||||| ||||||||||||||||
Sbjct: 82144 caacctccactaaaaacaactgta 82121



to top

>dbj|AP005130.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-168H23, complete
              sequence
          Length = 181276

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 362    tggttccagtggcgagcatg 381
              ||||||||||||||||||||
Sbjct: 168892 tggttccagtggcgagcatg 168873



to top

>emb|CR376779.18| Zebrafish DNA sequence from clone CH211-236N18 in linkage group 7,
              complete sequence
          Length = 177160

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 187    acaactgtagttgatcaaaa 206
              ||||||||||||||||||||
Sbjct: 125462 acaactgtagttgatcaaaa 125443


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,918,008
Number of Sequences: 3902068
Number of extensions: 3918008
Number of successful extensions: 83226
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83148
Number of HSP's gapped (non-prelim): 78
length of query: 438
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 416
effective length of database: 17,147,199,772
effective search space: 7133235105152
effective search space used: 7133235105152
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top