ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags37k14 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK063936.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-D10, full insert sequence Length = 1447 Score = 121 bits (61), Expect = 3e-24 Identities = 145/173 (83%) Strand = Plus / Minus Query: 430 tctgggtcagcttcatgcttcttccaagcttcctcaaactgctcccccttgcatttctgg 489 ||||||||| |||| ||||||||||||||||||||||| |||| |||||||||||||||| Sbjct: 1269 tctgggtcaacttcgtgcttcttccaagcttcctcaaattgctgccccttgcatttctgg 1210 Query: 490 agtagcatgagtatttccactatgtgatttcgcatgatctcccgactctttctcgtggct 549 ||| ||| ||||||| |||||||| | || || ||| || || | || |||||| Sbjct: 1209 agtgtagcgagcatttccaggatgtgattccacacgacctcacggctgctccttgtggct 1150 Query: 550 gactccttatacaaaaggacaagctcatccaccagtcttgaagtgtagggtga 602 ||||| || || ||||||||||||||||||||||| |||||||| || ||||| Sbjct: 1149 gactctttgtataaaaggacaagctcatccaccagccttgaagtataaggtga 1097
>dbj|AK073594.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033051C12, full insert sequence Length = 1615 Score = 109 bits (55), Expect = 1e-20 Identities = 130/155 (83%) Strand = Plus / Minus Query: 430 tctgggtcagcttcatgcttcttccaagcttcctcaaactgctcccccttgcatttctgg 489 ||||||||| |||| ||||||||||||||||||||||| |||| |||||||||||||||| Sbjct: 1448 tctgggtcaacttcgtgcttcttccaagcttcctcaaattgctgccccttgcatttctgg 1389 Query: 490 agtagcatgagtatttccactatgtgatttcgcatgatctcccgactctttctcgtggct 549 ||| ||| ||||||| |||||||| | || || ||| || || | || |||||| Sbjct: 1388 agtgtagcgagcatttccaggatgtgattccacacgacctcacggctgctccttgtggct 1329 Query: 550 gactccttatacaaaaggacaagctcatccaccag 584 ||||| || || ||||||||||||||||||||||| Sbjct: 1328 gactctttgtataaaaggacaagctcatccaccag 1294
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 75.8 bits (38), Expect = 1e-10 Identities = 50/54 (92%) Strand = Plus / Minus Query: 430 tctgggtcagcttcatgcttcttccaagcttcctcaaactgctcccccttgcat 483 ||||||||| |||| ||||||||||||||||||||||| |||| |||||||||| Sbjct: 28596964 tctgggtcaacttcgtgcttcttccaagcttcctcaaattgctgccccttgcat 28596911 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 544 gtggctgactccttatacaaaaggacaagctcatccaccag 584 ||||||||||| || || ||||||||||||||||||||||| Sbjct: 28596340 gtggctgactctttgtataaaaggacaagctcatccaccag 28596300
>dbj|AP003770.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0550B04 Length = 150131 Score = 75.8 bits (38), Expect = 1e-10 Identities = 50/54 (92%) Strand = Plus / Minus Query: 430 tctgggtcagcttcatgcttcttccaagcttcctcaaactgctcccccttgcat 483 ||||||||| |||| ||||||||||||||||||||||| |||| |||||||||| Sbjct: 88442 tctgggtcaacttcgtgcttcttccaagcttcctcaaattgctgccccttgcat 88389 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 544 gtggctgactccttatacaaaaggacaagctcatccaccag 584 ||||||||||| || || ||||||||||||||||||||||| Sbjct: 87818 gtggctgactctttgtataaaaggacaagctcatccaccag 87778
>gb|BT017689.1| Zea mays clone EL01N0444C07.c mRNA sequence Length = 1045 Score = 48.1 bits (24), Expect = 0.034 Identities = 42/48 (87%) Strand = Plus / Minus Query: 441 ttcatgcttcttccaagcttcctcaaactgctcccccttgcatttctg 488 |||||| |||||||||||||||||||| || | |||||||| ||||| Sbjct: 719 ttcatgtttcttccaagcttcctcaaattgatgtcccttgcagttctg 672
>gb|AC110564.7| Mus musculus chromosome 12, clone RP23-292A16, complete sequence Length = 211576 Score = 48.1 bits (24), Expect = 0.034 Identities = 24/24 (100%) Strand = Plus / Minus Query: 100 ctctaaagaagttacaaagttaca 123 |||||||||||||||||||||||| Sbjct: 52014 ctctaaagaagttacaaagttaca 51991
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 39 atttctataaaatggaagggttt 61 ||||||||||||||||||||||| Sbjct: 5918012 atttctataaaatggaagggttt 5917990
>emb|BX004804.10| Zebrafish DNA sequence from clone CH211-39M5 in linkage group 5, complete sequence Length = 170010 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 193 tcaggaccagaagcctccagtg 214 |||||||||||||||||||||| Sbjct: 132192 tcaggaccagaagcctccagtg 132171
>emb|BX530075.7| Zebrafish DNA sequence from clone CH211-1O14 in linkage group 5, complete sequence Length = 176078 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 193 tcaggaccagaagcctccagtg 214 |||||||||||||||||||||| Sbjct: 44629 tcaggaccagaagcctccagtg 44608
>gb|AC101784.7| Mus musculus chromosome 7, clone RP24-136D20, complete sequence Length = 169423 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 251 aggaaaaaatgcatgcaaata 271 ||||||||||||||||||||| Sbjct: 2405 aggaaaaaatgcatgcaaata 2425
>gb|AC069541.5| Homo sapiens chromosome 10 clone RP11-389O2, complete sequence Length = 158568 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 426 taaatctgggtcagcttcatg 446 ||||||||||||||||||||| Sbjct: 17285 taaatctgggtcagcttcatg 17305
>emb|AL606752.11| Human DNA sequence from clone RP11-740C1 on chromosome 1 Contains the OR10J5 gene for olfactory receptor family 10 subfamily J member 5 and an amyloid P component serum (APCS) pseudogene, complete sequence Length = 87134 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 97 tttctctaaagaagttacaaa 117 ||||||||||||||||||||| Sbjct: 35074 tttctctaaagaagttacaaa 35094
>gb|AC091772.5| Homo sapiens chromosome 10 clone RP11-257L6, complete sequence Length = 158559 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 426 taaatctgggtcagcttcatg 446 ||||||||||||||||||||| Sbjct: 141275 taaatctgggtcagcttcatg 141255
>gb|AC084324.8| Mus musculus Strain C57BL6/J chromosome 2 BAC, RP23-96L7 Complete Sequence, complete sequence Length = 205893 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 247 ttacaggaaaaaatgcatgcaaata 271 |||||||||||||| |||||||||| Sbjct: 145484 ttacaggaaaaaatacatgcaaata 145508
>emb|BX927402.13| Zebrafish DNA sequence from clone CH211-262G12 in linkage group 10, complete sequence Length = 155963 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 35 gtacatttctataaaatggaa 55 ||||||||||||||||||||| Sbjct: 48321 gtacatttctataaaatggaa 48341
>gb|AC114401.2| Homo sapiens chromosome 3 clone RP11-85I21, complete sequence Length = 172671 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 44 tataaaatggaagggttttat 64 ||||||||||||||||||||| Sbjct: 23628 tataaaatggaagggttttat 23648
>gb|AC022539.13| Homo sapiens chromosome 10 clone RP11-456A18, complete sequence Length = 96512 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 426 taaatctgggtcagcttcatg 446 ||||||||||||||||||||| Sbjct: 53724 taaatctgggtcagcttcatg 53744
>gb|AC110614.4| Homo sapiens BAC clone RP11-453D22 from 2, complete sequence Length = 185018 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 106 agaagttacaaagttacagca 126 ||||||||||||||||||||| Sbjct: 151567 agaagttacaaagttacagca 151547
>emb|AL928623.5| Mouse DNA sequence from clone RP23-276I21 on chromosome 2, complete sequence Length = 184480 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 247 ttacaggaaaaaatgcatgcaaata 271 |||||||||||||| |||||||||| Sbjct: 60405 ttacaggaaaaaatacatgcaaata 60381
>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome Length = 3184243 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 345 cagcgagaatatcagttgaac 365 ||||||||||||||||||||| Sbjct: 1413987 cagcgagaatatcagttgaac 1414007
>ref|NM_122713.2| Arabidopsis thaliana transcription factor AT5G28300 mRNA, complete cds Length = 2180 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 tgcttcttccaagcttcctc 464 |||||||||||||||||||| Sbjct: 1207 tgcttcttccaagcttcctc 1188
>gb|AE014292.2| Brucella suis 1330 chromosome II, complete sequence Length = 1207381 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 ccagcgccaccgcgctttca 192 |||||||||||||||||||| Sbjct: 47577 ccagcgccaccgcgctttca 47558
>emb|AL928688.3| Human DNA sequence from clone RP11-77N10 on chromosome 10, complete sequence Length = 165910 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 acatttctctaaagaagttacaaa 117 ||||||||||||||||| |||||| Sbjct: 37914 acatttctctaaagaagatacaaa 37937
>emb|AL591962.15| Human DNA sequence from clone RP11-346O16 on chromosome 6, complete sequence Length = 86881 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 acatttctctaaagaagtta 113 |||||||||||||||||||| Sbjct: 81076 acatttctctaaagaagtta 81095
>emb|AL445483.13| Human DNA sequence from clone RP11-92G12 on chromosome 1 Contains the KIF14 gene for kinesin family member 14, a novel gene (DKFZp564B1023) and a novel gene, complete sequence Length = 164008 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 acatttctctaaagaagttacaaa 117 ||||||||| |||||||||||||| Sbjct: 101535 acatttctccaaagaagttacaaa 101558
>emb|AL354803.24| Human DNA sequence from clone RP11-539I23 on chromosome 13 Contains the 5' end of a novel gene, complete sequence Length = 179380 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 acatttctctaaagaagttacaaa 117 ||||||||||||||||| |||||| Sbjct: 124160 acatttctctaaagaagatacaaa 124183
>emb|AL354806.22| Human DNA sequence from clone RP11-521J24 on chromosome 13 Contains a novel gene, complete sequence Length = 198959 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 acatttctctaaagaagttacaaa 117 ||||||||||||||||| |||||| Sbjct: 96839 acatttctctaaagaaggtacaaa 96862
>gb|BT000461.1| Arabidopsis thaliana Unknown protein mRNA, complete cds Length = 2044 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 tgcttcttccaagcttcctc 464 |||||||||||||||||||| Sbjct: 1072 tgcttcttccaagcttcctc 1053
>gb|AC106606.5| Rattus norvegicus 1 BAC CH230-148J18 (Children's Hospital Oakland Research Institute) complete sequence Length = 227298 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 ggaaaaaatgcatgcaaata 271 |||||||||||||||||||| Sbjct: 76211 ggaaaaaatgcatgcaaata 76192
>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome Length = 3665893 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 cttcatgcttcttccaagct 459 |||||||||||||||||||| Sbjct: 2640941 cttcatgcttcttccaagct 2640960
>emb|AL161577.2|ATCHRIV73 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 73 Length = 194862 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 495 catgagtatttccactatgtgatt 518 ||||||||||| |||||||||||| Sbjct: 65801 catgagtatttacactatgtgatt 65778
>gb|BT008389.1| Arabidopsis thaliana At5g28300 gene, complete cds Length = 1860 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 tgcttcttccaagcttcctc 464 |||||||||||||||||||| Sbjct: 1025 tgcttcttccaagcttcctc 1006
>emb|AJ291572.1|TNI291572 Tomentypnum nitens mitochondrial partial nad5 gene for NADH dehydrogenase subunit 5, exons 1-2 Length = 1937 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 424 gttaaatctgggtcagcttc 443 |||||||||||||||||||| Sbjct: 686 gttaaatctgggtcagcttc 667
>emb|BX470159.8| Zebrafish DNA sequence from clone DKEY-34H12, complete sequence Length = 210284 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 tatcagttgaactcaaaatt 373 |||||||||||||||||||| Sbjct: 37558 tatcagttgaactcaaaatt 37577
>gb|AY081484.1| Arabidopsis thaliana unknown protein mRNA, complete cds Length = 1777 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 tgcttcttccaagcttcctc 464 |||||||||||||||||||| Sbjct: 872 tgcttcttccaagcttcctc 853
>gb|AC092743.5| Homo sapiens 3q BAC RP11-782E15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 70401 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 247 ttacaggaaaaaatgcatgcaaatacaa 274 ||||| || ||||||||||||||||||| Sbjct: 62820 ttacatgagaaaatgcatgcaaatacaa 62793
>dbj|AK166314.1| Mus musculus mammary gland RCB-0526 Jyg-MC(A) cDNA, RIKEN full-length enriched library, clone:G830036B20 product:hypothetical protein, full insert sequence Length = 3829 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 436 tcagcttcatgcttcttcca 455 |||||||||||||||||||| Sbjct: 3550 tcagcttcatgcttcttcca 3531
>gb|AC093150.4| Homo sapiens chromosome 1 clone RP11-34I24, complete sequence Length = 189946 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 aggaaaaaatgcatgcaaat 270 |||||||||||||||||||| Sbjct: 143558 aggaaaaaatgcatgcaaat 143577
>gb|AF386963.1|AF386963 Arabidopsis thaliana Unknown protein mRNA, complete cds Length = 1958 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 tgcttcttccaagcttcctc 464 |||||||||||||||||||| Sbjct: 1003 tgcttcttccaagcttcctc 984
>emb|BX649538.4| Zebrafish DNA sequence from clone CH211-239N21 in linkage group 3, complete sequence Length = 147441 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 tatcagttgaactcaaaatt 373 |||||||||||||||||||| Sbjct: 109503 tatcagttgaactcaaaatt 109522
>gb|AE009642.1| Brucella melitensis 16M chromosome II, section 4 of 107 of the complete sequence Length = 14439 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 ccagcgccaccgcgctttca 192 |||||||||||||||||||| Sbjct: 13302 ccagcgccaccgcgctttca 13321
>gb|AC026201.3|AC026201 Homo sapiens chromosome 11 clone RP11-546N8 map 11q, complete sequence Length = 202218 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 aagttacaaagttacagcat 127 |||||||||||||||||||| Sbjct: 178726 aagttacaaagttacagcat 178745
>gb|AC138069.3| Homo sapiens chromosome 3 clone RP13-546I2, complete sequence Length = 177334 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 acatttctctaaagaagttacaaa 117 ||||||||||||||||| |||||| Sbjct: 160649 acatttctctaaagaagatacaaa 160672
>gb|AF296835.1|T8M17 Arabidopsis thaliana BAC T8M17 Length = 114695 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 445 tgcttcttccaagcttcctc 464 |||||||||||||||||||| Sbjct: 90247 tgcttcttccaagcttcctc 90266
>gb|AC021998.4|AC021998 Homo sapiens chromosome 11 clone RP11-116N3 map 11, complete sequence Length = 142446 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 aagttacaaagttacagcat 127 |||||||||||||||||||| Sbjct: 56026 aagttacaaagttacagcat 56007
>gb|AC034099.16| Mus Musculus Strain C57BL6/J Chromosome 7 BAC, RP23-145I16, complete sequence Length = 229553 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 548 ctgactccttatacaaaagg 567 |||||||||||||||||||| Sbjct: 36871 ctgactccttatacaaaagg 36852
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 gccagcgccaccgcgctttc 191 |||||||||||||||||||| Sbjct: 4348778 gccagcgccaccgcgctttc 4348797
>gb|AE017224.1| Brucella abortus biovar 1 str. 9-941 chromosome II, complete sequence Length = 1162204 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 ccagcgccaccgcgctttca 192 |||||||||||||||||||| Sbjct: 47380 ccagcgccaccgcgctttca 47361
>emb|AL450341.10| Mouse DNA sequence from clone RP23-401L17 on chromosome 2, complete sequence Length = 214573 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 436 tcagcttcatgcttcttcca 455 |||||||||||||||||||| Sbjct: 190381 tcagcttcatgcttcttcca 190362
>gb|AF160182.1|F17I23 Arabidopsis thaliana BAC F17I23 Length = 134784 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 495 catgagtatttccactatgtgatt 518 ||||||||||| |||||||||||| Sbjct: 35516 catgagtatttacactatgtgatt 35539
>dbj|AP006215.1| Homo sapiens genomic DNA, chromosome 11, clone:RP11-729P6, complete sequence Length = 189310 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 aagttacaaagttacagcat 127 |||||||||||||||||||| Sbjct: 142047 aagttacaaagttacagcat 142028
>gb|AE017321.1| Wolbachia endosymbiont strain TRS of Brugia malayi, complete genome Length = 1080084 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 aggaaaaaatgcatgcaaat 270 |||||||||||||||||||| Sbjct: 619240 aggaaaaaatgcatgcaaat 619221
>gb|U83435.1|TBU83435 Trypanosoma brucei metacyclic variable antigen variant surface glycoprotein 7 gene, complete cds Length = 4920 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 254 aaaaaatgcatgcaaatacaagga 277 |||||| ||||||||||||||||| Sbjct: 1450 aaaaaaggcatgcaaatacaagga 1427
>emb|AL773593.10| Zebrafish DNA sequence from clone CH211-202N20 in linkage group 5, complete sequence Length = 202726 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 tatcagttgaactcaaaatt 373 |||||||||||||||||||| Sbjct: 138046 tatcagttgaactcaaaatt 138027
>emb|AM040265.1| Brucella melitensis biovar Abortus chromosome II, complete sequence, strain 2308 Length = 1156948 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 ccagcgccaccgcgctttca 192 |||||||||||||||||||| Sbjct: 47429 ccagcgccaccgcgctttca 47410
>gb|U95626.1|HSU95626 Homo sapiens ccr2b (ccr2), ccr2a (ccr2), ccr5 (ccr5) and ccr6 (ccr6) genes, complete cds, and lactoferrin (lactoferrin) gene, partial cds, complete sequence Length = 143068 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 acatttctctaaagaagttacaaa 117 ||||||||||||||||| |||||| Sbjct: 26015 acatttctctaaagaagatacaaa 26038
>emb|AL683888.10| Mouse DNA sequence from clone RP23-462C12 on chromosome X, complete sequence Length = 200089 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 aaaaaatgcatgcaaataca 273 |||||||||||||||||||| Sbjct: 95914 aaaaaatgcatgcaaataca 95895
>emb|AL603651.14| Mouse DNA sequence from clone RP23-398J2 on chromosome 7, complete sequence Length = 205942 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 548 ctgactccttatacaaaagg 567 |||||||||||||||||||| Sbjct: 165120 ctgactccttatacaaaagg 165101
>gb|AC087276.13| Homo sapiens chromosome 11, clone RP11-484D2, complete sequence Length = 204109 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 33 tagtacatttctataaaatggaag 56 |||||||||||||| ||||||||| Sbjct: 77199 tagtacatttctattaaatggaag 77176 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,349,477 Number of Sequences: 3902068 Number of extensions: 5349477 Number of successful extensions: 102723 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 59 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 102509 Number of HSP's gapped (non-prelim): 214 length of query: 603 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 580 effective length of database: 17,143,297,704 effective search space: 9943112668320 effective search space used: 9943112668320 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
