| Clone Name | rbags37k09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|D26105.1|BLYHEMH1 Barley mRNA for ferrochelatase Length = 1728 Score = 1223 bits (617), Expect = 0.0 Identities = 617/617 (100%) Strand = Plus / Minus Query: 22 caagttataaattattcaacggtctatatggtttctagttacaatcaccaaaatggttaa 81 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1633 caagttataaattattcaacggtctatatggtttctagttacaatcaccaaaatggttaa 1574 Query: 82 ccacgttgcatcgataaaaataagcagctcactgaagagtgttccggaaagcagaaacta 141 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1573 ccacgttgcatcgataaaaataagcagctcactgaagagtgttccggaaagcagaaacta 1514 Query: 142 gcctcggcgataacagcaggaagaaggccaggaccgagcccaagaacatcttggtcagat 201 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1513 gcctcggcgataacagcaggaagaaggccaggaccgagcccaagaacatcttggtcagat 1454 Query: 202 aatgcatcatgtccatgtcagagtcagtatccttgacctttctggtcgccatcgcggagg 261 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1453 aatgcatcatgtccatgtcagagtcagtatccttgacctttctggtcgccatcgcggagg 1394 Query: 262 cagagggaagggcttcgacgacagcgtcagcgaggtccgagatgaaggatgaggtgcatc 321 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1393 cagagggaagggcttcgacgacagcgtcagcgaggtccgagatgaaggatgaggtgcatc 1334 Query: 322 caagagctggaaccctcccccagttctcaatgcccgactctagagccaactccctgtact 381 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1333 caagagctggaaccctcccccagttctcaatgcccgactctagagccaactccctgtact 1274 Query: 382 ccatgtcgatttcttccagtgtctcaatatgctcgctcacaaagcttactgggacagcca 441 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1273 ccatgtcgatttcttccagtgtctcaatatgctcgctcacaaagcttactgggacagcca 1214 Query: 442 ggagactcttaacacccttttgaccaagttcaactaaaacttcatcagtatatggcttaa 501 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1213 ggagactcttaacacccttttgaccaagttcaactaaaacttcatcagtatatggcttaa 1154 Query: 502 gccattgaactggtcccacgcgactctggtaggccagagtatggtcattcaaggttcctc 561 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1153 gccattgaactggtcccacgcgactctggtaggccagagtatggtcattcaaggttcctc 1094 Query: 562 tggatttcaactcctccatgatcaaagcaatgcagtcttccatctgatctctgtatggat 621 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1093 tggatttcaactcctccatgatcaaagcaatgcagtcttccatctgatctctgtatggat 1034 Query: 622 ctccagcatccttaaca 638 ||||||||||||||||| Sbjct: 1033 ctccagcatccttaaca 1017
>gb|AF020791.1|AF020791 Hordeum vulgare ferrochelatase (hemH) gene, complete cds Length = 7694 Score = 805 bits (406), Expect = 0.0 Identities = 406/406 (100%) Strand = Plus / Minus Query: 22 caagttataaattattcaacggtctatatggtttctagttacaatcaccaaaatggttaa 81 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6900 caagttataaattattcaacggtctatatggtttctagttacaatcaccaaaatggttaa 6841 Query: 82 ccacgttgcatcgataaaaataagcagctcactgaagagtgttccggaaagcagaaacta 141 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6840 ccacgttgcatcgataaaaataagcagctcactgaagagtgttccggaaagcagaaacta 6781 Query: 142 gcctcggcgataacagcaggaagaaggccaggaccgagcccaagaacatcttggtcagat 201 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6780 gcctcggcgataacagcaggaagaaggccaggaccgagcccaagaacatcttggtcagat 6721 Query: 202 aatgcatcatgtccatgtcagagtcagtatccttgacctttctggtcgccatcgcggagg 261 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6720 aatgcatcatgtccatgtcagagtcagtatccttgacctttctggtcgccatcgcggagg 6661 Query: 262 cagagggaagggcttcgacgacagcgtcagcgaggtccgagatgaaggatgaggtgcatc 321 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6660 cagagggaagggcttcgacgacagcgtcagcgaggtccgagatgaaggatgaggtgcatc 6601 Query: 322 caagagctggaaccctcccccagttctcaatgcccgactctagagccaactccctgtact 381 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6600 caagagctggaaccctcccccagttctcaatgcccgactctagagccaactccctgtact 6541 Query: 382 ccatgtcgatttcttccagtgtctcaatatgctcgctcacaaagct 427 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6540 ccatgtcgatttcttccagtgtctcaatatgctcgctcacaaagct 6495 Score = 222 bits (112), Expect = 1e-54 Identities = 112/112 (100%) Strand = Plus / Minus Query: 527 ctggtaggccagagtatggtcattcaaggttcctctggatttcaactcctccatgatcaa 586 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5678 ctggtaggccagagtatggtcattcaaggttcctctggatttcaactcctccatgatcaa 5619 Query: 587 agcaatgcagtcttccatctgatctctgtatggatctccagcatccttaaca 638 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5618 agcaatgcagtcttccatctgatctctgtatggatctccagcatccttaaca 5567 Score = 206 bits (104), Expect = 6e-50 Identities = 104/104 (100%) Strand = Plus / Minus Query: 426 cttactgggacagccaggagactcttaacacccttttgaccaagttcaactaaaacttca 485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6012 cttactgggacagccaggagactcttaacacccttttgaccaagttcaactaaaacttca 5953 Query: 486 tcagtatatggcttaagccattgaactggtcccacgcgactctg 529 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5952 tcagtatatggcttaagccattgaactggtcccacgcgactctg 5909
>dbj|AK068174.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129M17, full insert sequence Length = 1963 Score = 444 bits (224), Expect = e-121 Identities = 344/384 (89%) Strand = Plus / Minus Query: 255 gcggaggcagagggaagggcttcgacgacagcgtcagcgaggtccgagatgaaggatgag 314 ||||| || ||||| ||||||||||| || || ||||| ||||| ||||||||||||||| Sbjct: 1490 gcggaagcggagggcagggcttcgaccactgcatcagcaaggtcggagatgaaggatgag 1431 Query: 315 gtgcatccaagagctggaaccctcccccagttctcaatgcccgactctagagccaactcc 374 ||||||||||||||||||||||| ||||||||||| |||||||| |||||||||| |||| Sbjct: 1430 gtgcatccaagagctggaacccttccccagttctcgatgcccgattctagagccagctcc 1371 Query: 375 ctgtactccatgtcgatttcttccagtgtctcaatatgctcgctcacaaagcttactggg 434 |||||||||||||||||||||||| ||||| || ||||||||||||||||||||||| Sbjct: 1370 ttgtactccatgtcgatttcttccaaggtctcgatgtgctcgctcacaaagcttactgga 1311 Query: 435 acagccaggagactcttaacacccttttgaccaagttcaactaaaacttcatcagtatat 494 ||||||||||| ||||| ||||||| |||||| |||||||||| |||||||||||||||| Sbjct: 1310 acagccaggaggctctttacaccctgttgacctagttcaactagaacttcatcagtatat 1251 Query: 495 ggcttaagccattgaactggtcccacgcgactctggtaggccagagtatggtcattcaag 554 || || ||||| |||||||| ||||| ||||||||||| |||||||||||| || ||| Sbjct: 1250 ggtttcagccactgaactggccccactcgactctggtaagccagagtatggctgtttaag 1191 Query: 555 gttcctctggatttcaactcctccatgatcaaagcaatgcagtcttccatctgatctctg 614 ||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||| Sbjct: 1190 attcctctggattttaactctcccatgatcaaagcaatgcagtcctccatctgatctctg 1131 Query: 615 tatggatctccagcatccttaaca 638 || ||||||||||||||| ||||| Sbjct: 1130 taaggatctccagcatccgtaaca 1107 Score = 65.9 bits (33), Expect = 2e-07 Identities = 84/101 (83%) Strand = Plus / Minus Query: 120 gtgttccggaaagcagaaactagcctcggcgataacagcaggaagaaggccaggaccgag 179 |||||||||||||| |||| ||||| ||||| || || |||| ||| |||| || ||| Sbjct: 1625 gtgttccggaaagcggaaatcagccttggcgacaataggaggacgaacgccaagatggag 1566 Query: 180 cccaagaacatcttggtcagataatgcatcatgtccatgtc 220 || |||||||||||| |||| || ||||||| ||||||||| Sbjct: 1565 ccgaagaacatcttgctcaggtagtgcatcaggtccatgtc 1525
>gb|AY108431.1| Zea mays PCO068191 mRNA sequence Length = 1776 Score = 396 bits (200), Expect = e-107 Identities = 350/400 (87%) Strand = Plus / Minus Query: 239 ctttctggtcgccatcgcggaggcagagggaagggcttcgacgacagcgtcagcgaggtc 298 |||||||||||| | ||| || |||||||| ||||||||||||||||| || || ||||| Sbjct: 1389 ctttctggtcgcgagcgctgaagcagagggcagggcttcgacgacagcatctgcaaggtc 1330 Query: 299 cgagatgaaggatgaggtgcatccaagagctggaaccctcccccagttctcaatgcccga 358 |||||||| | ||| |||||||||||||| ||||||| |||||||||| ||||| || Sbjct: 1329 ggagatgaatgttgaagtgcatccaagagcaggaacccgaccccagttcttgatgcctga 1270 Query: 359 ctctagagccaactccctgtactccatgtcgatttcttccagtgtctcaatatgctcgct 418 || |||||||||||| ||||||||||||| |||||||||| |||||| || ||||| || Sbjct: 1269 ttccagagccaactccttgtactccatgtcaatttcttccaatgtctcgatgtgctcact 1210 Query: 419 cacaaagcttactgggacagccaggagactcttaacacccttttgaccaagttcaactaa 478 ||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| ||||| Sbjct: 1209 cacaaagcttactggaacagccaggaggctcttcacacccttttgaccaagttctactaa 1150 Query: 479 aacttcatcagtatatggcttaagccattgaactggtcccacgcgactctggtaggccag 538 ||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |||| Sbjct: 1149 aacttcatcagtatatggcttcagccattgaactggccccacccgactctggtacgccaa 1090 Query: 539 agtatggtcattcaaggttcctctggatttcaactcctccatgatcaaagcaatgcagtc 598 ||| || ||| ||| ||||||| ||| | |||||| |||||||||||||||| || || Sbjct: 1089 agtgtgactatttaagattcctcttgatcttaactcccccatgatcaaagcaatacaatc 1030 Query: 599 ttccatctgatctctgtatggatctccagcatccttaaca 638 ||||||||||||||||| |||||||||||||||| |||| Sbjct: 1029 ctccatctgatctctgtaaggatctccagcatcctcaaca 990 Score = 46.1 bits (23), Expect = 0.14 Identities = 77/95 (81%) Strand = Plus / Minus Query: 124 tccggaaagcagaaactagcctcggcgataacagcaggaagaaggccaggaccgagccca 183 ||||||| || ||||||||||| || |||| |||||||| || |||| || ||||| | Sbjct: 1504 tccggaaggcggaaactagccttggtgatagcagcaggacaaatgccaagattgagccaa 1445 Query: 184 agaacatcttggtcagataatgcatcatgtccatg 218 | | ||||||||| || |||||| ||| ||||||| Sbjct: 1444 acagcatcttggtgaggtaatgcgtcaggtccatg 1410
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 208 bits (105), Expect = 2e-50 Identities = 156/173 (90%) Strand = Plus / Minus Query: 255 gcggaggcagagggaagggcttcgacgacagcgtcagcgaggtccgagatgaaggatgag 314 ||||| || ||||| ||||||||||| || || ||||| ||||| ||||||||||||||| Sbjct: 7150082 gcggaagcggagggcagggcttcgaccactgcatcagcaaggtcggagatgaaggatgag 7150023 Query: 315 gtgcatccaagagctggaaccctcccccagttctcaatgcccgactctagagccaactcc 374 ||||||||||||||||||||||| ||||||||||| |||||||| |||||||||| |||| Sbjct: 7150022 gtgcatccaagagctggaacccttccccagttctcgatgcccgattctagagccagctcc 7149963 Query: 375 ctgtactccatgtcgatttcttccagtgtctcaatatgctcgctcacaaagct 427 |||||||||||||||||||||||| ||||| || ||||||||||||||||| Sbjct: 7149962 ttgtactccatgtcgatttcttccaaggtctcgatgtgctcgctcacaaagct 7149910 Score = 127 bits (64), Expect = 5e-26 Identities = 100/112 (89%) Strand = Plus / Minus Query: 527 ctggtaggccagagtatggtcattcaaggttcctctggatttcaactcctccatgatcaa 586 |||||| |||||||||||| || ||| ||||||||||||| ||||| |||||||||| Sbjct: 7149091 ctggtaagccagagtatggctgtttaagattcctctggattttaactctcccatgatcaa 7149032 Query: 587 agcaatgcagtcttccatctgatctctgtatggatctccagcatccttaaca 638 |||||||||||| ||||||||||||||||| ||||||||||||||| ||||| Sbjct: 7149031 agcaatgcagtcctccatctgatctctgtaaggatctccagcatccgtaaca 7148980 Score = 119 bits (60), Expect = 1e-23 Identities = 93/104 (89%) Strand = Plus / Minus Query: 426 cttactgggacagccaggagactcttaacacccttttgaccaagttcaactaaaacttca 485 |||||||| ||||||||||| ||||| ||||||| |||||| |||||||||| ||||||| Sbjct: 7149426 cttactggaacagccaggaggctctttacaccctgttgacctagttcaactagaacttca 7149367 Query: 486 tcagtatatggcttaagccattgaactggtcccacgcgactctg 529 ||||||||||| || ||||| |||||||| ||||| |||||||| Sbjct: 7149366 tcagtatatggtttcagccactgaactggccccactcgactctg 7149323 Score = 65.9 bits (33), Expect = 2e-07 Identities = 84/101 (83%) Strand = Plus / Minus Query: 120 gtgttccggaaagcagaaactagcctcggcgataacagcaggaagaaggccaggaccgag 179 |||||||||||||| |||| ||||| ||||| || || |||| ||| |||| || ||| Sbjct: 7150217 gtgttccggaaagcggaaatcagccttggcgacaataggaggacgaacgccaagatggag 7150158 Query: 180 cccaagaacatcttggtcagataatgcatcatgtccatgtc 220 || |||||||||||| |||| || ||||||| ||||||||| Sbjct: 7150157 ccgaagaacatcttgctcaggtagtgcatcaggtccatgtc 7150117
>dbj|AP004011.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1381_H04 Length = 130961 Score = 208 bits (105), Expect = 2e-50 Identities = 156/173 (90%) Strand = Plus / Minus Query: 255 gcggaggcagagggaagggcttcgacgacagcgtcagcgaggtccgagatgaaggatgag 314 ||||| || ||||| ||||||||||| || || ||||| ||||| ||||||||||||||| Sbjct: 2187 gcggaagcggagggcagggcttcgaccactgcatcagcaaggtcggagatgaaggatgag 2128 Query: 315 gtgcatccaagagctggaaccctcccccagttctcaatgcccgactctagagccaactcc 374 ||||||||||||||||||||||| ||||||||||| |||||||| |||||||||| |||| Sbjct: 2127 gtgcatccaagagctggaacccttccccagttctcgatgcccgattctagagccagctcc 2068 Query: 375 ctgtactccatgtcgatttcttccagtgtctcaatatgctcgctcacaaagct 427 |||||||||||||||||||||||| ||||| || ||||||||||||||||| Sbjct: 2067 ttgtactccatgtcgatttcttccaaggtctcgatgtgctcgctcacaaagct 2015 Score = 127 bits (64), Expect = 5e-26 Identities = 100/112 (89%) Strand = Plus / Minus Query: 527 ctggtaggccagagtatggtcattcaaggttcctctggatttcaactcctccatgatcaa 586 |||||| |||||||||||| || ||| ||||||||||||| ||||| |||||||||| Sbjct: 1196 ctggtaagccagagtatggctgtttaagattcctctggattttaactctcccatgatcaa 1137 Query: 587 agcaatgcagtcttccatctgatctctgtatggatctccagcatccttaaca 638 |||||||||||| ||||||||||||||||| ||||||||||||||| ||||| Sbjct: 1136 agcaatgcagtcctccatctgatctctgtaaggatctccagcatccgtaaca 1085 Score = 119 bits (60), Expect = 1e-23 Identities = 93/104 (89%) Strand = Plus / Minus Query: 426 cttactgggacagccaggagactcttaacacccttttgaccaagttcaactaaaacttca 485 |||||||| ||||||||||| ||||| ||||||| |||||| |||||||||| ||||||| Sbjct: 1531 cttactggaacagccaggaggctctttacaccctgttgacctagttcaactagaacttca 1472 Query: 486 tcagtatatggcttaagccattgaactggtcccacgcgactctg 529 ||||||||||| || ||||| |||||||| ||||| |||||||| Sbjct: 1471 tcagtatatggtttcagccactgaactggccccactcgactctg 1428 Score = 65.9 bits (33), Expect = 2e-07 Identities = 84/101 (83%) Strand = Plus / Minus Query: 120 gtgttccggaaagcagaaactagcctcggcgataacagcaggaagaaggccaggaccgag 179 |||||||||||||| |||| ||||| ||||| || || |||| ||| |||| || ||| Sbjct: 2322 gtgttccggaaagcggaaatcagccttggcgacaataggaggacgaacgccaagatggag 2263 Query: 180 cccaagaacatcttggtcagataatgcatcatgtccatgtc 220 || |||||||||||| |||| || ||||||| ||||||||| Sbjct: 2262 ccgaagaacatcttgctcaggtagtgcatcaggtccatgtc 2222
>dbj|AP004756.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0592C05 Length = 150478 Score = 208 bits (105), Expect = 2e-50 Identities = 156/173 (90%) Strand = Plus / Minus Query: 255 gcggaggcagagggaagggcttcgacgacagcgtcagcgaggtccgagatgaaggatgag 314 ||||| || ||||| ||||||||||| || || ||||| ||||| ||||||||||||||| Sbjct: 102161 gcggaagcggagggcagggcttcgaccactgcatcagcaaggtcggagatgaaggatgag 102102 Query: 315 gtgcatccaagagctggaaccctcccccagttctcaatgcccgactctagagccaactcc 374 ||||||||||||||||||||||| ||||||||||| |||||||| |||||||||| |||| Sbjct: 102101 gtgcatccaagagctggaacccttccccagttctcgatgcccgattctagagccagctcc 102042 Query: 375 ctgtactccatgtcgatttcttccagtgtctcaatatgctcgctcacaaagct 427 |||||||||||||||||||||||| ||||| || ||||||||||||||||| Sbjct: 102041 ttgtactccatgtcgatttcttccaaggtctcgatgtgctcgctcacaaagct 101989 Score = 127 bits (64), Expect = 5e-26 Identities = 100/112 (89%) Strand = Plus / Minus Query: 527 ctggtaggccagagtatggtcattcaaggttcctctggatttcaactcctccatgatcaa 586 |||||| |||||||||||| || ||| ||||||||||||| ||||| |||||||||| Sbjct: 101170 ctggtaagccagagtatggctgtttaagattcctctggattttaactctcccatgatcaa 101111 Query: 587 agcaatgcagtcttccatctgatctctgtatggatctccagcatccttaaca 638 |||||||||||| ||||||||||||||||| ||||||||||||||| ||||| Sbjct: 101110 agcaatgcagtcctccatctgatctctgtaaggatctccagcatccgtaaca 101059 Score = 119 bits (60), Expect = 1e-23 Identities = 93/104 (89%) Strand = Plus / Minus Query: 426 cttactgggacagccaggagactcttaacacccttttgaccaagttcaactaaaacttca 485 |||||||| ||||||||||| ||||| ||||||| |||||| |||||||||| ||||||| Sbjct: 101505 cttactggaacagccaggaggctctttacaccctgttgacctagttcaactagaacttca 101446 Query: 486 tcagtatatggcttaagccattgaactggtcccacgcgactctg 529 ||||||||||| || ||||| |||||||| ||||| |||||||| Sbjct: 101445 tcagtatatggtttcagccactgaactggccccactcgactctg 101402 Score = 65.9 bits (33), Expect = 2e-07 Identities = 84/101 (83%) Strand = Plus / Minus Query: 120 gtgttccggaaagcagaaactagcctcggcgataacagcaggaagaaggccaggaccgag 179 |||||||||||||| |||| ||||| ||||| || || |||| ||| |||| || ||| Sbjct: 102296 gtgttccggaaagcggaaatcagccttggcgacaataggaggacgaacgccaagatggag 102237 Query: 180 cccaagaacatcttggtcagataatgcatcatgtccatgtc 220 || |||||||||||| |||| || ||||||| ||||||||| Sbjct: 102236 ccgaagaacatcttgctcaggtagtgcatcaggtccatgtc 102196
>dbj|D26106.1|CUSHEMH2 Cucumber mRNA for ferrochelatase Length = 1763 Score = 139 bits (70), Expect = 1e-29 Identities = 192/230 (83%), Gaps = 2/230 (0%) Strand = Plus / Minus Query: 402 gtctcaatatgctcgctcacaaagcttactgggacagccaggagactcttaacacccttt 461 |||||||| ||||| ||||||||||| || || || || ||||||||||||| |||||| Sbjct: 1275 gtctcaatgtgctcactcacaaagctcacgggaacggctaggagactcttaatacccttc 1216 Query: 462 tgaccaagttcaactaaaacttcatcagtatatggcttaagccattgaactggtcccacg 521 || ||||| ||||| | ||||||||| || ||||||||||||||||| || ||||| || Sbjct: 1215 tggccaagctcaacaagaacttcatctgtgtatggcttaagccattgtacaggtccaaca 1156 Query: 522 cgactctggtaggccagagtatggtcattcaaggttcctctggatttcaactcctccatg 581 || |||||||| || |||||||| |||||| ||||||||| ||||| ||| | |||| Sbjct: 1155 cggctctggtatgcaagagtatgctcattcccaattcctctggctttcagctcttgcatg 1096 Query: 582 atcaaagca-atgcagtcttccatctgatctctgtatggatctccagcat 630 || | ||| ||||| |||||||| |||||| |||||||||||||||||| Sbjct: 1095 at-taggcagatgcactcttccatttgatctttgtatggatctccagcat 1047
>gb|AY107322.1| Zea mays PCO069079 mRNA sequence Length = 389 Score = 137 bits (69), Expect = 5e-29 Identities = 219/269 (81%) Strand = Plus / Minus Query: 120 gtgttccggaaagcagaaactagcctcggcgataacagcaggaagaaggccaggaccgag 179 |||||||||||||||||||| || || || || |||||||||| || |||| || ||| Sbjct: 276 gtgttccggaaagcagaaaccagtcttggtgacaacagcaggataaatgccaagattgag 217 Query: 180 cccaagaacatcttggtcagataatgcatcatgtccatgtcagagtcagtatccttgacc 239 || ||||||||||||||||| |||||||||| |||||| || || || || | | Sbjct: 216 ccgaagaacatcttggtcaggtaatgcatcagatccatgctggaatcggtgtcttcaggc 157 Query: 240 tttctggtcgccatcgcggaggcagagggaagggcttcgacgacagcgtcagcgaggtcc 299 |||||||| ||| ||| |||||||| || ||||||||||| || || || || ||||| Sbjct: 156 tttctggttcccagcgccgaggcagatgggagggcttcgacaaccgcatctgcaaggtcg 97 Query: 300 gagatgaaggatgaggtgcatccaagagctggaaccctcccccagttctcaatgcccgac 359 |||||||| | || |||||||||||||| || |||| ||||||||||||||||| || Sbjct: 96 gagatgaaagtcgaagtgcatccaagagcagggacccggccccagttctcaatgcctgat 37 Query: 360 tctagagccaactccctgtactccatgtc 388 || |||||||||||| ||||||||||||| Sbjct: 36 tccagagccaactccttgtactccatgtc 8
>ref|NM_122504.3| Arabidopsis thaliana ferrochelatase AT5G26030 transcript variant AT5G26030.1 mRNA, complete cds Length = 2038 Score = 93.7 bits (47), Expect = 7e-16 Identities = 161/199 (80%) Strand = Plus / Minus Query: 339 ccccagttctcaatgcccgactctagagccaactccctgtactccatgtcgatttcttcc 398 ||||||||||| | || ||||| ||||| || ||||| ||||||||||| || || || Sbjct: 1384 ccccagttctctacccctgactcaagagctaattccctatactccatgtctatctcctca 1325 Query: 399 agtgtctcaatatgctcgctcacaaagcttactgggacagccaggagactcttaacaccc 458 ||||||||||| ||||| ||||| || || ||||| || || || |||||||||||||| Sbjct: 1324 agtgtctcaatgtgctcactcacgaaactgactggaacggctagtagactcttaacacca 1265 Query: 459 ttttgaccaagttcaactaaaacttcatcagtatatggcttaagccattgaactggtccc 518 | | |||||| || || | ||| ||||| || |||||||| ||||||||||| || || Sbjct: 1264 ctcttaccaaggtcgacaagaacctcatcggtgtatggcttcagccattgaacagggcca 1205 Query: 519 acgcgactctggtaggcca 537 || ||||||||||| |||| Sbjct: 1204 acacgactctggtatgcca 1186
>ref|NM_001036864.1| Arabidopsis thaliana ferrochelatase AT5G26030 transcript variant AT5G26030.2 mRNA, complete cds Length = 1976 Score = 93.7 bits (47), Expect = 7e-16 Identities = 161/199 (80%) Strand = Plus / Minus Query: 339 ccccagttctcaatgcccgactctagagccaactccctgtactccatgtcgatttcttcc 398 ||||||||||| | || ||||| ||||| || ||||| ||||||||||| || || || Sbjct: 1384 ccccagttctctacccctgactcaagagctaattccctatactccatgtctatctcctca 1325 Query: 399 agtgtctcaatatgctcgctcacaaagcttactgggacagccaggagactcttaacaccc 458 ||||||||||| ||||| ||||| || || ||||| || || || |||||||||||||| Sbjct: 1324 agtgtctcaatgtgctcactcacgaaactgactggaacggctagtagactcttaacacca 1265 Query: 459 ttttgaccaagttcaactaaaacttcatcagtatatggcttaagccattgaactggtccc 518 | | |||||| || || | ||| ||||| || |||||||| ||||||||||| || || Sbjct: 1264 ctcttaccaaggtcgacaagaacctcatcggtgtatggcttcagccattgaacagggcca 1205 Query: 519 acgcgactctggtaggcca 537 || ||||||||||| |||| Sbjct: 1204 acacgactctggtatgcca 1186
>emb|X73417.1|ATHEM15A A.thaliana HEM15 mRNA for ferrochelatase Length = 1867 Score = 93.7 bits (47), Expect = 7e-16 Identities = 161/199 (80%) Strand = Plus / Minus Query: 339 ccccagttctcaatgcccgactctagagccaactccctgtactccatgtcgatttcttcc 398 ||||||||||| | || ||||| ||||| || ||||| ||||||||||| || || || Sbjct: 1235 ccccagttctctacccctgactcaagagctaattccctatactccatgtctatctcctca 1176 Query: 399 agtgtctcaatatgctcgctcacaaagcttactgggacagccaggagactcttaacaccc 458 ||||||||||| ||||| ||||| || || ||||| || || || |||||||||||||| Sbjct: 1175 agtgtctcaatgtgctcactcacgaaactgactggaacggctagtagactcttaacacca 1116 Query: 459 ttttgaccaagttcaactaaaacttcatcagtatatggcttaagccattgaactggtccc 518 | | |||||| || || | ||| ||||| || |||||||| ||||||||||| || || Sbjct: 1115 ctcttaccaaggtcgacaagaacctcatcggtgtatggcttcagccattgaacagggcca 1056 Query: 519 acgcgactctggtaggcca 537 || ||||||||||| |||| Sbjct: 1055 acacgactctggtatgcca 1037
>gb|AY078959.1| Arabidopsis thaliana AT5g26030/T1N24_17 mRNA, complete sequence Length = 1960 Score = 93.7 bits (47), Expect = 7e-16 Identities = 161/199 (80%) Strand = Plus / Minus Query: 339 ccccagttctcaatgcccgactctagagccaactccctgtactccatgtcgatttcttcc 398 ||||||||||| | || ||||| ||||| || ||||| ||||||||||| || || || Sbjct: 1341 ccccagttctctacccctgactcaagagctaattccctatactccatgtctatctcctca 1282 Query: 399 agtgtctcaatatgctcgctcacaaagcttactgggacagccaggagactcttaacaccc 458 ||||||||||| ||||| ||||| || || ||||| || || || |||||||||||||| Sbjct: 1281 agtgtctcaatgtgctcactcacgaaactgactggaacggctagtagactcttaacacca 1222 Query: 459 ttttgaccaagttcaactaaaacttcatcagtatatggcttaagccattgaactggtccc 518 | | |||||| || || | ||| ||||| || |||||||| ||||||||||| || || Sbjct: 1221 ctcttaccaaggtcgacaagaacctcatcggtgtatggcttcagccattgaacagggcca 1162 Query: 519 acgcgactctggtaggcca 537 || ||||||||||| |||| Sbjct: 1161 acacgactctggtatgcca 1143
>emb|BX832323.1|CNS09ZTO Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH65ZH02 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1737 Score = 93.7 bits (47), Expect = 7e-16 Identities = 161/199 (80%) Strand = Plus / Minus Query: 339 ccccagttctcaatgcccgactctagagccaactccctgtactccatgtcgatttcttcc 398 ||||||||||| | || ||||| ||||| || ||||| ||||||||||| || || || Sbjct: 1227 ccccagttctctacccctgactcaagagctaattccctatactccatgtctatctcctca 1168 Query: 399 agtgtctcaatatgctcgctcacaaagcttactgggacagccaggagactcttaacaccc 458 ||||||||||| ||||| ||||| || || ||||| || || || |||||||||||||| Sbjct: 1167 agtgtctcaatgtgctcactcacgaaactgactggaacggctagtagactcttaacacca 1108 Query: 459 ttttgaccaagttcaactaaaacttcatcagtatatggcttaagccattgaactggtccc 518 | | |||||| || || | ||| ||||| || |||||||| ||||||||||| || || Sbjct: 1107 ctcttaccaaggtcgacaagaacctcatcggtgtatggcttcagccattgaacagggcca 1048 Query: 519 acgcgactctggtaggcca 537 || ||||||||||| |||| Sbjct: 1047 acacgactctggtatgcca 1029
>emb|CT009490.7| M.truncatula DNA sequence from clone MTH2-174P8 on chromosome 3, complete sequence Length = 107411 Score = 73.8 bits (37), Expect = 6e-10 Identities = 58/65 (89%) Strand = Plus / Plus Query: 363 agagccaactccctgtactccatgtcgatttcttccagtgtctcaatatgctcgctcaca 422 |||||||| ||||||||||||||||| |||||||| || ||||| || ||||| |||||| Sbjct: 46850 agagccaattccctgtactccatgtcaatttcttcaagagtctctatgtgctcactcaca 46909 Query: 423 aagct 427 ||||| Sbjct: 46910 aagct 46914
>emb|AJ005802.1|STU5802 Solanum tuberosum, cultivar binje, mRNA for ferrochelatase Length = 2051 Score = 58.0 bits (29), Expect = 4e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 483 tcatcagtatatggcttaagccattgaactggtcccacgcgactctggtaggccagagta 542 |||||||||||||| |||||||||| ||| ||||| || | |||||| ||||||| |||| Sbjct: 1033 tcatcagtatatggtttaagccattcaacaggtccaaccctactctgataggccaaagta 974 Query: 543 t 543 | Sbjct: 973 t 973
>emb|Y13382.1|ATFERRCHI Arabidopsis thaliana ferrochelatase-I gene and promoter sequence Length = 4304 Score = 54.0 bits (27), Expect = 6e-04 Identities = 69/83 (83%) Strand = Plus / Minus Query: 339 ccccagttctcaatgcccgactctagagccaactccctgtactccatgtcgatttcttcc 398 ||||||||||| | || ||||| ||||| || ||||| ||||||||||| || || || Sbjct: 3656 ccccagttctctacccctgactcaagagctaattccctatactccatgtctatctcctca 3597 Query: 399 agtgtctcaatatgctcgctcac 421 ||||||||||| ||||| ||||| Sbjct: 3596 agtgtctcaatgtgctcactcac 3574 Score = 46.1 bits (23), Expect = 0.14 Identities = 71/87 (81%) Strand = Plus / Minus Query: 444 agactcttaacacccttttgaccaagttcaactaaaacttcatcagtatatggcttaagc 503 |||||||||||||| | | |||||| || || | ||| ||||| || |||||||| ||| Sbjct: 3415 agactcttaacaccactcttaccaaggtcgacaagaacctcatcggtgtatggcttcagc 3356 Query: 504 cattgaactggtcccacgcgactctgg 530 |||||||| || || || ||||||||| Sbjct: 3355 cattgaacagggccaacacgactctgg 3329
>gb|AF149413.1|T1N24 Arabidopsis thaliana BAC T1N24 Length = 127053 Score = 54.0 bits (27), Expect = 6e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 339 ccccagttctcaatgcccgactctagagccaactccctgtactccatgtcgatttcttcc 398 ||||||||||| | || ||||| ||||| || ||||| ||||||||||| || || || Sbjct: 47611 ccccagttctctacccctgactcaagagctaattccctatactccatgtctatctcctca 47670 Query: 399 agtgtctcaatatgctcgctcac 421 ||||||||||| ||||| ||||| Sbjct: 47671 agtgtctcaatgtgctcactcac 47693 Score = 46.1 bits (23), Expect = 0.14 Identities = 71/87 (81%) Strand = Plus / Plus Query: 444 agactcttaacacccttttgaccaagttcaactaaaacttcatcagtatatggcttaagc 503 |||||||||||||| | | |||||| || || | ||| ||||| || |||||||| ||| Sbjct: 47854 agactcttaacaccactcttaccaaggtcgacaagaacctcatcggtgtatggcttcagc 47913 Query: 504 cattgaactggtcccacgcgactctgg 530 |||||||| || || || ||||||||| Sbjct: 47914 cattgaacagggccaacacgactctgg 47940
>gb|AF332962.1| Chlamydomonas reinhardtii ferrochelatase mRNA, complete cds Length = 2660 Score = 54.0 bits (27), Expect = 6e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 377 gtactccatgtcgatttcttccagtgtctcaatatgctcgctcacaaagct 427 ||||||||||||||| || |||| |||||||| |||||||| |||||||| Sbjct: 1281 gtactccatgtcgatctcctccaacgtctcaatgtgctcgctgacaaagct 1231
>ref|NM_128592.2| Arabidopsis thaliana ferrochelatase AT2G30390 mRNA, complete cds Length = 1859 Score = 52.0 bits (26), Expect = 0.002 Identities = 65/78 (83%) Strand = Plus / Minus Query: 396 tccagtgtctcaatatgctcgctcacaaagcttactgggacagccaggagactcttaaca 455 ||||| || ||||| |||||||||||||| |||| || |||||||| ||| | | |||| Sbjct: 1250 tccagagtttcaatgtgctcgctcacaaaacttatgggtacagccagaagattttcaaca 1191 Query: 456 cccttttgaccaagttca 473 || |||| |||||||||| Sbjct: 1190 ccttttttaccaagttca 1173
>gb|BT008877.1| Arabidopsis thaliana At2g30390 mRNA, complete cds Length = 1539 Score = 52.0 bits (26), Expect = 0.002 Identities = 65/78 (83%) Strand = Plus / Minus Query: 396 tccagtgtctcaatatgctcgctcacaaagcttactgggacagccaggagactcttaaca 455 ||||| || ||||| |||||||||||||| |||| || |||||||| ||| | | |||| Sbjct: 1145 tccagagtttcaatgtgctcgctcacaaaacttatgggtacagccagaagattttcaaca 1086 Query: 456 cccttttgaccaagttca 473 || |||| |||||||||| Sbjct: 1085 ccttttttaccaagttca 1068
>gb|BT000465.1| Arabidopsis thaliana putative ferrochelatase precusor (At2g30390) mRNA, complete cds Length = 1860 Score = 52.0 bits (26), Expect = 0.002 Identities = 65/78 (83%) Strand = Plus / Minus Query: 396 tccagtgtctcaatatgctcgctcacaaagcttactgggacagccaggagactcttaaca 455 ||||| || ||||| |||||||||||||| |||| || |||||||| ||| | | |||| Sbjct: 1251 tccagagtttcaatgtgctcgctcacaaaacttatgggtacagccagaagattttcaaca 1192 Query: 456 cccttttgaccaagttca 473 || |||| |||||||||| Sbjct: 1191 ccttttttaccaagttca 1174
>emb|Y13156.1|ATFERROCH Arabidopsis thaliana mRNA for ferrochelatase Length = 1797 Score = 52.0 bits (26), Expect = 0.002 Identities = 65/78 (83%) Strand = Plus / Minus Query: 396 tccagtgtctcaatatgctcgctcacaaagcttactgggacagccaggagactcttaaca 455 ||||| || ||||| |||||||||||||| |||| || |||||||| ||| | | |||| Sbjct: 1169 tccagagtttcaatgtgctcgctcacaaaacttatgggtacagccagaagattttcaaca 1110 Query: 456 cccttttgaccaagttca 473 || |||| |||||||||| Sbjct: 1109 ccttttttaccaagttca 1092
>gb|AF428371.1|AF428371 Arabidopsis thaliana T9D9.20/T9D9.20 mRNA, complete cds Length = 1769 Score = 52.0 bits (26), Expect = 0.002 Identities = 65/78 (83%) Strand = Plus / Minus Query: 396 tccagtgtctcaatatgctcgctcacaaagcttactgggacagccaggagactcttaaca 455 ||||| || ||||| |||||||||||||| |||| || |||||||| ||| | | |||| Sbjct: 1178 tccagagtttcaatgtgctcgctcacaaaacttatgggtacagccagaagattttcaaca 1119 Query: 456 cccttttgaccaagttca 473 || |||| |||||||||| Sbjct: 1118 ccttttttaccaagttca 1101
>emb|BX820877.1|CNS0A9IA Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH78ZA06 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1788 Score = 52.0 bits (26), Expect = 0.002 Identities = 65/78 (83%) Strand = Plus / Minus Query: 396 tccagtgtctcaatatgctcgctcacaaagcttactgggacagccaggagactcttaaca 455 ||||| || ||||| |||||||||||||| |||| || |||||||| ||| | | |||| Sbjct: 1227 tccagagtttcaatgtgctcgctcacaaaacttatgggtacagccagaagattttcaaca 1168 Query: 456 cccttttgaccaagttca 473 || |||| |||||||||| Sbjct: 1167 ccttttttaccaagttca 1150
>emb|BX820158.1|CNS0A82Y Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS82ZH07 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1795 Score = 52.0 bits (26), Expect = 0.002 Identities = 65/78 (83%) Strand = Plus / Minus Query: 396 tccagtgtctcaatatgctcgctcacaaagcttactgggacagccaggagactcttaaca 455 ||||| || ||||| |||||||||||||| |||| || |||||||| ||| | | |||| Sbjct: 1230 tccagagtttcaatgtgctcgctcacaaaacttatgggtacagccagaagattttcaaca 1171 Query: 456 cccttttgaccaagttca 473 || |||| |||||||||| Sbjct: 1170 ccttttttaccaagttca 1153
>gb|AY108152.1| Zea mays PCO129975 mRNA sequence Length = 1119 Score = 52.0 bits (26), Expect = 0.002 Identities = 80/98 (81%) Strand = Plus / Minus Query: 327 gctggaaccctcccccagttctcaatgcccgactctagagccaactccctgtactccatg 386 |||||||||| ||||||| || ||||| || |||| ||||||||| ||||||||| Sbjct: 597 gctggaacccgtccccagtgcttgatgccagattctaaagccaactctttgtactccaca 538 Query: 387 tcgatttcttccagtgtctcaatatgctcgctcacaaa 424 ||||||||||||| || ||||| || ||||| ||||| Sbjct: 537 tcgatttcttccaaagtttcaatgtgttcgctaacaaa 500
>emb|AJ316569.1|NTA316569 Nicotiana tabacum mRNA for ferrochelatase precursor (FeCh gene) Length = 2118 Score = 50.1 bits (25), Expect = 0.009 Identities = 52/61 (85%) Strand = Plus / Minus Query: 483 tcatcagtatatggcttaagccattgaactggtcccacgcgactctggtaggccagagta 542 |||||||||||||| || ||||||| ||| ||||| || | |||||| ||||||| |||| Sbjct: 1081 tcatcagtatatggtttcagccattcaacaggtccaaccctactctgataggccaaagta 1022 Query: 543 t 543 | Sbjct: 1021 t 1021
>gb|AC068993.14| Homo sapiens 12 BAC RP11-123M21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 186383 Score = 48.1 bits (24), Expect = 0.036 Identities = 24/24 (100%) Strand = Plus / Minus Query: 599 ttccatctgatctctgtatggatc 622 |||||||||||||||||||||||| Sbjct: 59006 ttccatctgatctctgtatggatc 58983
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Minus Query: 381 tccatgtcgatttcttccagtgtctc 406 |||||| ||||||||||||||||||| Sbjct: 1133001 tccatggcgatttcttccagtgtctc 1132976
>ref|NM_014191.1| Homo sapiens sodium channel, voltage gated, type VIII, alpha (SCN8A), mRNA Length = 7008 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 597 tcttccatctgatctctgtat 617 ||||||||||||||||||||| Sbjct: 4349 tcttccatctgatctctgtat 4329
>emb|X58369.1|RPTRFIIIA R.pipiens mRNA for transcription factor IIIA Length = 1297 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 471 tcaactaaaacttcatcagta 491 ||||||||||||||||||||| Sbjct: 418 tcaactaaaacttcatcagta 438
>emb|AL845496.5| Mouse DNA sequence from clone RP23-245J21 on chromosome 4 Contains part of the Ptprd gene for receptor type protein tyrosine phosphatase D, complete sequence Length = 187964 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 151 ataacagcaggaagaaggcca 171 ||||||||||||||||||||| Sbjct: 97915 ataacagcaggaagaaggcca 97935
>gb|AC013421.31| Homo sapiens 12 BAC RP11-714I16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 57062 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 597 tcttccatctgatctctgtat 617 ||||||||||||||||||||| Sbjct: 13452 tcttccatctgatctctgtat 13472
>gb|AF225988.1|AF225988 Homo sapiens voltage-gated sodium channel alpha subunit (SCN8A) mRNA, complete cds Length = 7053 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 597 tcttccatctgatctctgtat 617 ||||||||||||||||||||| Sbjct: 4171 tcttccatctgatctctgtat 4151
>emb|AJ310898.1|HSA310898 Homo sapiens partial mRNA for voltage-gated sodium channel Nav1.6 (SCN8A gene), cell line MCF-7 Length = 187 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 597 tcttccatctgatctctgtat 617 ||||||||||||||||||||| Sbjct: 137 tcttccatctgatctctgtat 117
>emb|AJ310885.1|HSA310885 Homo sapiens partial mRNA for voltage-gated sodium channel Nav1.6 (SCN8A gene), D3 neonatal splice variant, cell line MCF-7 Length = 423 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 597 tcttccatctgatctctgtat 617 ||||||||||||||||||||| Sbjct: 422 tcttccatctgatctctgtat 402
>emb|AJ310884.1|HSA310884 Homo sapiens mRNA for Nav1.6 voltage-gated sodium channel (SCN8A gene) Nav1.6, D3 neonatal splice variant, cell lines MDA-MB-231 Length = 423 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 597 tcttccatctgatctctgtat 617 ||||||||||||||||||||| Sbjct: 422 tcttccatctgatctctgtat 402
>emb|AJ277395.1|HSA277395 Homo sapiens partial mRNA for voltage-gated sodium channel (SCN8A gene) Length = 423 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 597 tcttccatctgatctctgtat 617 ||||||||||||||||||||| Sbjct: 422 tcttccatctgatctctgtat 402
>emb|AJ276142.1|HSA276142 Homo sapiens partial mRNA for hNa6/Scn8a voltage-gated sodium channel (SCN8A gene), cell line LNCaP Length = 423 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 597 tcttccatctgatctctgtat 617 ||||||||||||||||||||| Sbjct: 422 tcttccatctgatctctgtat 402
>emb|AJ276141.1|HSA276141 Homo sapiens partial mRNA for hNa6/Scn8a voltage-gated sodium channel (SCN8A gene), cell line PC-3 Length = 423 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 597 tcttccatctgatctctgtat 617 ||||||||||||||||||||| Sbjct: 422 tcttccatctgatctctgtat 402
>gb|AF050731.1|HSSCN8A21 Homo sapiens voltage-gated sodium channel alpha subunit (SCN8A) gene, exon 19 Length = 305 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 597 tcttccatctgatctctgtat 617 ||||||||||||||||||||| Sbjct: 239 tcttccatctgatctctgtat 219
>gb|M85211.1|RANTFIIIA Rana pipiens TFIIIA mRNA, complete cds Length = 1305 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 471 tcaactaaaacttcatcagta 491 ||||||||||||||||||||| Sbjct: 404 tcaactaaaacttcatcagta 424
>dbj|AB027567.1| Homo sapiens SCN8A mRNA for sodium channel, complete cds Length = 7008 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 597 tcttccatctgatctctgtat 617 ||||||||||||||||||||| Sbjct: 4349 tcttccatctgatctctgtat 4329
>gb|AC113013.15| Mus musculus chromosome 7, clone RP23-174K7, complete sequence Length = 235823 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 577 ccatgatcaaagcaatgcag 596 |||||||||||||||||||| Sbjct: 42143 ccatgatcaaagcaatgcag 42124
>gb|BC024401.1| Mus musculus RIKEN cDNA 8430410A17 gene, mRNA (cDNA clone MGC:36239 IMAGE:5026919), complete cds Length = 1422 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 545 gtcattcaaggttcctctgg 564 |||||||||||||||||||| Sbjct: 376 gtcattcaaggttcctctgg 395
>ref|XM_715968.1| Candida albicans SC5314 hypothetical protein (CaO19_8435), mRNA Length = 5745 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 466 caagttcaactaaaacttca 485 |||||||||||||||||||| Sbjct: 3208 caagttcaactaaaacttca 3189
>ref|XM_715846.1| Candida albicans SC5314 hypothetical protein (CaO19_815), mRNA Length = 5745 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 466 caagttcaactaaaacttca 485 |||||||||||||||||||| Sbjct: 3208 caagttcaactaaaacttca 3189
>gb|AC161244.2| Mus musculus BAC clone RP24-393O16 from chromosome 13, complete sequence Length = 201429 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 57 tagttacaatcaccaaaatggtta 80 ||||||||||||||||||| |||| Sbjct: 30292 tagttacaatcaccaaaattgtta 30269
>gb|AC121916.3| Mus musculus BAC clone RP24-192K21 from chromosome 13, complete sequence Length = 157970 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 57 tagttacaatcaccaaaatggtta 80 ||||||||||||||||||| |||| Sbjct: 34659 tagttacaatcaccaaaattgtta 34682
>emb|AL354928.9| Human DNA sequence from clone RP11-175D17 on chromosome 9 Contains the 5' end of the NR6A1 gene for nuclear receptor (subfamily 6, group A) member 1, three novel genes, the RPL35 gene for ribosomal protein L35, the gene for a hypothetical protein similar to actin related protein 2/3 complex subunit 5 (MGC3038), the 3' end of the GOLGA1 gene for golgi autoantigen (golgin subfamily a, 1) and six CpG islands, complete sequence Length = 176539 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 501 agccattgaactggtcccac 520 |||||||||||||||||||| Sbjct: 138603 agccattgaactggtcccac 138584
>gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome Length = 1842899 Score = 40.1 bits (20), Expect = 8.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 405 tcaatatgctcgctcacaaagcttactgggac 436 ||||||||||| |||||||| |||| |||||| Sbjct: 1808635 tcaatatgctcactcacaaaacttattgggac 1808604
>gb|BC032853.1| Homo sapiens golgi autoantigen, golgin subfamily a, 1, mRNA (cDNA clone MGC:33154 IMAGE:4828793), complete cds Length = 4792 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 501 agccattgaactggtcccac 520 |||||||||||||||||||| Sbjct: 4411 agccattgaactggtcccac 4430
>emb|AL714025.12| Mouse DNA sequence from clone RP23-16H24 on chromosome 13 Contains the Abt1 gene for activator of basal transcription, a novel gene, the Btn1a1 gene for butyrophilin 1A1, the gene for a novel butyrophilin subfamily 2 (Btn2) member and three CpG islands, complete sequence Length = 121496 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 ccctcccccagttctcaatg 353 |||||||||||||||||||| Sbjct: 29058 ccctcccccagttctcaatg 29039
>gb|BC064070.1| Mus musculus RIKEN cDNA 8430410A17 gene, mRNA (cDNA clone MGC:73655 IMAGE:3371288), complete cds Length = 1439 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 545 gtcattcaaggttcctctgg 564 |||||||||||||||||||| Sbjct: 359 gtcattcaaggttcctctgg 378
>emb|BX663515.13| Zebrafish DNA sequence from clone DKEY-228G21 in linkage group 23, complete sequence Length = 224215 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 473 aactaaaacttcatcagtatatgg 496 ||||||||||||| |||||||||| Sbjct: 60350 aactaaaacttcaccagtatatgg 60327
>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 Length = 4170692 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 gagatgaaggatgaggtgca 319 |||||||||||||||||||| Sbjct: 3460042 gagatgaaggatgaggtgca 3460023
>emb|BX571968.10| Zebrafish DNA sequence from clone DKEY-27C4 in linkage group 23, complete sequence Length = 225376 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 473 aactaaaacttcatcagtatatgg 496 ||||||||||||| |||||||||| Sbjct: 120887 aactaaaacttcaccagtatatgg 120864
>dbj|AK009949.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched library, clone:2310057B04 product:unclassifiable, full insert sequence Length = 1268 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 ccctcccccagttctcaatg 353 |||||||||||||||||||| Sbjct: 1149 ccctcccccagttctcaatg 1130
>dbj|AK010550.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:2410018M03 product:similar to DC12 PROTEIN (DUF159 containing protein) [Homo sapiens], full insert sequence Length = 1185 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 545 gtcattcaaggttcctctgg 564 |||||||||||||||||||| Sbjct: 144 gtcattcaaggttcctctgg 163
>ref|NM_002077.2| Homo sapiens golgi autoantigen, golgin subfamily a, 1 (GOLGA1), mRNA Length = 4805 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 501 agccattgaactggtcccac 520 |||||||||||||||||||| Sbjct: 4412 agccattgaactggtcccac 4431
>dbj|AK018400.1| Mus musculus 16 days embryo lung cDNA, RIKEN full-length enriched library, clone:8430410A17 product:similar to DC12 PROTEIN [Homo sapiens], full insert sequence Length = 1567 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 545 gtcattcaaggttcctctgg 564 |||||||||||||||||||| Sbjct: 526 gtcattcaaggttcctctgg 545
>ref|NM_173737.2| Mus musculus RIKEN cDNA 8430410A17 gene (8430410A17Rik), mRNA Length = 1422 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 545 gtcattcaaggttcctctgg 564 |||||||||||||||||||| Sbjct: 376 gtcattcaaggttcctctgg 395
>emb|BX571825.6| Zebrafish DNA sequence from clone DKEY-158E13 in linkage group 18, complete sequence Length = 200814 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 tctatatggtttctagttac 63 |||||||||||||||||||| Sbjct: 187024 tctatatggtttctagttac 187043
>gb|AF123462.1|DJ526N18 Homo sapiens BAC526N18 neurexin III gene, partial cds Length = 180104 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 cagcaggaagaaggccagga 174 |||||||||||||||||||| Sbjct: 142923 cagcaggaagaaggccagga 142904
>gb|U51587.1|HSU51587 Homo sapiens Golgi complex autoantigen golgin-97 mRNA, complete cds Length = 4860 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 501 agccattgaactggtcccac 520 |||||||||||||||||||| Sbjct: 4431 agccattgaactggtcccac 4450
>dbj|AB208858.1| Homo sapiens mRNA for golgin 97 variant protein Length = 4158 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 501 agccattgaactggtcccac 520 |||||||||||||||||||| Sbjct: 3792 agccattgaactggtcccac 3811
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 cagcaggaagaaggccagga 174 |||||||||||||||||||| Sbjct: 3013304 cagcaggaagaaggccagga 3013285
>dbj|AP006688.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT16L14, TM0383, complete sequence Length = 81488 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 572 ctcctccatgatcaaagcaa 591 |||||||||||||||||||| Sbjct: 38030 ctcctccatgatcaaagcaa 38049 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,023,881 Number of Sequences: 3902068 Number of extensions: 6023881 Number of successful extensions: 98377 Number of sequences better than 10.0: 69 Number of HSP's better than 10.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 98136 Number of HSP's gapped (non-prelim): 241 length of query: 638 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 615 effective length of database: 17,143,297,704 effective search space: 10543128087960 effective search space used: 10543128087960 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)