ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags37k07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_472782.1| Oryza sativa (japonica cultivar-group), predic... 208 1e-50
2gb|AY110980.1| Zea mays CL9490_1 mRNA sequence 149 9e-33
3emb|AL663017.3|OSJN00149 Oryza sativa genomic DNA, chromosome 4,... 113 5e-22
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 113 5e-22
5emb|AL606653.3|OSJN00104 Oryza sativa genomic DNA, chromosome 4,... 113 5e-22
6gb|AC102588.7| Mus musculus chromosome 18, clone RP23-334D14, co... 42 1.6
7gb|AC093349.6| Mus musculus chromosome 19, clone RP23-16C14, com... 42 1.6
8emb|BX088690.9| Zebrafish DNA sequence from clone CH211-211A20 i... 42 1.6
9emb|CR788229.7| Zebrafish DNA sequence from clone DKEY-261F4 in ... 42 1.6
10gb|AC114409.17| Mus musculus chromosome 5, clone RP23-148F6, com... 40 6.2
11emb|CR381707.2| Human DNA sequence from clone RP5-824I19 on chro... 40 6.2
12emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 6.2
13gb|AC053481.13| Homo sapiens chromosome 17, clone RP11-51L5, com... 40 6.2
14emb|BX649410.18| Mouse DNA sequence from clone RP23-168C6 on chr... 40 6.2
15gb|AC104640.3| Homo sapiens 3 BAC RP11-809F4 (Roswell Park Cance... 40 6.2
16emb|BX005076.13| Zebrafish DNA sequence from clone DKEY-7N16 in ... 40 6.2
17gb|AC101685.9| Mus musculus chromosome 5, clone RP23-187K3, comp... 40 6.2
18gb|AC008026.7| Homo sapiens chromosome 17, clone RP11-464D20, co... 40 6.2
19emb|CR548631.18| Zebrafish DNA sequence from clone CH211-117I20 ... 40 6.2 
>ref|XM_472782.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3039

 Score =  208 bits (105), Expect = 1e-50
 Identities = 193/224 (86%)
 Strand = Plus / Minus

                                                                        
Query: 234  gctccccaacctctgtacaaaatcactttgtttggttctcgcgacacaagaaccgatcct 293
            ||||||||||| |||||||||||||||||||| || || |||||||| ||||||||||| 
Sbjct: 2912 gctccccaacccctgtacaaaatcactttgttgggctcccgcgacactagaaccgatcca 2853

                                                                        
Query: 294  gttgcctcctctagttctgatatcagctgttgaactggagttccatctgctctgttctta 353
            ||||| |||||||||||||| |||| ||| |||| ||||||||| ||||||| |||||| 
Sbjct: 2852 gttgcttcctctagttctgaaatcaactgctgaattggagttccgtctgctcggttcttg 2793

                                                                        
Query: 354  atattcacaacancaagaggatgctttttgaagtgtgtccgtattgntttcncaactccg 413
            |||||||||| | ||||||||||||| |||||||||||   ||||| |||  | ||||| 
Sbjct: 2792 atattcacaatagcaagaggatgcttcttgaagtgtgtttttattgcttttgcgactcct 2733

                                                        
Query: 414  gtgatgacattattnctcccaatggcaagtactggccntttctt 457
            ||||||||||| || |||||||  || |||||||||| ||||||
Sbjct: 2732 gtgatgacattgttcctcccaacagcgagtactggccgtttctt 2689



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 65/72 (90%)
 Strand = Plus / Minus

                                                                        
Query: 116  tgattcacctgggtgcaacccacattctaatctaatggcttcaaggagctgcggtgatat 175
            ||||||||| ||||| || |||||||||||||| | |||||| |||||||| ||||||||
Sbjct: 3033 tgattcaccagggtgtaatccacattctaatctgacggcttccaggagctgaggtgatat 2974

                        
Query: 176  cacctccttttc 187
            ||||||||||||
Sbjct: 2973 cacctccttttc 2962
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>gb|AY110980.1| Zea mays CL9490_1 mRNA sequence
          Length = 599

 Score =  149 bits (75), Expect = 9e-33
 Identities = 209/254 (82%)
 Strand = Plus / Plus

                                                                       
Query: 135 ccacattctaatctaatggcttcaaggagctgcggtgatatcacctccttttctcccaca 194
           ||||| ||||| || || |||||||||||||| |||||||| ||||||||||| ||| | 
Sbjct: 277 ccacactctaacctgatagcttcaaggagctgaggtgatatgacctccttttcgccctcg 336

                                                                       
Query: 195 tatgtgctatcttccctggaactagtctgggtggcgtccgctccccaacctctgtacaaa 254
           | |||||||  |||||| || ||  ||||||   | || || ||||| ||||||||||| 
Sbjct: 337 tctgtgctactttcccttgagcttttctgggccacttctgcgccccagcctctgtacaag 396

                                                                       
Query: 255 atcactttgtttggttctcgcgacacaagaaccgatcctgttgcctcctctagttctgat 314
           ||||||||||| | |||||| ||||| || ||||||||||| |||||||| ||||| |||
Sbjct: 397 atcactttgttggtttctcgtgacactagcaccgatcctgtcgcctcctcgagttccgat 456

                                                                       
Query: 315 atcagctgttgaactggagttccatctgctctgttcttaatattcacaacancaagagga 374
           |||||||| ||||  ||||| || || ||||||||||| || ||||| | | ||||||| 
Sbjct: 457 atcagctgctgaatcggagtcccgtccgctctgttcttgatgttcacgatagcaagaggg 516

                         
Query: 375 tgctttttgaagtg 388
           ||||| ||||||||
Sbjct: 517 tgcttcttgaagtg 530
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>emb|AL663017.3|OSJN00149 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060P14,
             complete sequence
          Length = 139418

 Score =  113 bits (57), Expect = 5e-22
 Identities = 113/133 (84%)
 Strand = Plus / Plus

                                                                         
Query: 301   cctctagttctgatatcagctgttgaactggagttccatctgctctgttcttaatattca 360
             ||||||||||||| |||| ||| |||| ||||||||| ||||||| |||||| |||||||
Sbjct: 77538 cctctagttctgaaatcaactgctgaattggagttccgtctgctcggttcttgatattca 77597

                                                                         
Query: 361   caacancaagaggatgctttttgaagtgtgtccgtattgntttcncaactccggtgatga 420
             ||| | ||||||||||||| |||||||||||   ||||| |||  | ||||| |||||||
Sbjct: 77598 caatagcaagaggatgcttcttgaagtgtgtttttattgcttttgcgactcctgtgatga 77657

                          
Query: 421   cattattnctccc 433
             |||| || |||||
Sbjct: 77658 cattgttcctccc 77670



 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 75/85 (88%)
 Strand = Plus / Plus

                                                                         
Query: 103   gatccagctattgtgattcacctgggtgcaacccacattctaatctaatggcttcaagga 162
             |||||| ||| | ||||||||| ||||| || |||||||||||||| | |||||| ||||
Sbjct: 77255 gatccatctactctgattcaccagggtgtaatccacattctaatctgacggcttccagga 77314

                                      
Query: 163   gctgcggtgatatcacctccttttc 187
             |||| ||||||||||||||||||||
Sbjct: 77315 gctgaggtgatatcacctccttttc 77339



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 63/70 (90%)
 Strand = Plus / Plus

                                                                         
Query: 234   gctccccaacctctgtacaaaatcactttgtttggttctcgcgacacaagaaccgatcct 293
             ||||||||||| |||||||||||||||||||| || || |||||||| ||||||||||| 
Sbjct: 77389 gctccccaacccctgtacaaaatcactttgttgggctcccgcgacactagaaccgatcca 77448

                       
Query: 294   gttgcctcct 303
             ||||| ||||
Sbjct: 77449 gttgcttcct 77458
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  113 bits (57), Expect = 5e-22
 Identities = 113/133 (84%)
 Strand = Plus / Plus

                                                                            
Query: 301      cctctagttctgatatcagctgttgaactggagttccatctgctctgttcttaatattca 360
                ||||||||||||| |||| ||| |||| ||||||||| ||||||| |||||| |||||||
Sbjct: 23187346 cctctagttctgaaatcaactgctgaattggagttccgtctgctcggttcttgatattca 23187405

                                                                            
Query: 361      caacancaagaggatgctttttgaagtgtgtccgtattgntttcncaactccggtgatga 420
                ||| | ||||||||||||| |||||||||||   ||||| |||  | ||||| |||||||
Sbjct: 23187406 caatagcaagaggatgcttcttgaagtgtgtttttattgcttttgcgactcctgtgatga 23187465

                             
Query: 421      cattattnctccc 433
                |||| || |||||
Sbjct: 23187466 cattgttcctccc 23187478



 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 75/85 (88%)
 Strand = Plus / Plus

                                                                            
Query: 103      gatccagctattgtgattcacctgggtgcaacccacattctaatctaatggcttcaagga 162
                |||||| ||| | ||||||||| ||||| || |||||||||||||| | |||||| ||||
Sbjct: 23187063 gatccatctactctgattcaccagggtgtaatccacattctaatctgacggcttccagga 23187122

                                         
Query: 163      gctgcggtgatatcacctccttttc 187
                |||| ||||||||||||||||||||
Sbjct: 23187123 gctgaggtgatatcacctccttttc 23187147



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 63/70 (90%)
 Strand = Plus / Plus

                                                                            
Query: 234      gctccccaacctctgtacaaaatcactttgtttggttctcgcgacacaagaaccgatcct 293
                ||||||||||| |||||||||||||||||||| || || |||||||| ||||||||||| 
Sbjct: 23187197 gctccccaacccctgtacaaaatcactttgttgggctcccgcgacactagaaccgatcca 23187256

                          
Query: 294      gttgcctcct 303
                ||||| ||||
Sbjct: 23187257 gttgcttcct 23187266
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>emb|AL606653.3|OSJN00104 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0048E02,
             complete sequence
          Length = 121337

 Score =  113 bits (57), Expect = 5e-22
 Identities = 113/133 (84%)
 Strand = Plus / Plus

                                                                         
Query: 301   cctctagttctgatatcagctgttgaactggagttccatctgctctgttcttaatattca 360
             ||||||||||||| |||| ||| |||| ||||||||| ||||||| |||||| |||||||
Sbjct: 25499 cctctagttctgaaatcaactgctgaattggagttccgtctgctcggttcttgatattca 25558

                                                                         
Query: 361   caacancaagaggatgctttttgaagtgtgtccgtattgntttcncaactccggtgatga 420
             ||| | ||||||||||||| |||||||||||   ||||| |||  | ||||| |||||||
Sbjct: 25559 caatagcaagaggatgcttcttgaagtgtgtttttattgcttttgcgactcctgtgatga 25618

                          
Query: 421   cattattnctccc 433
             |||| || |||||
Sbjct: 25619 cattgttcctccc 25631



 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 75/85 (88%)
 Strand = Plus / Plus

                                                                         
Query: 103   gatccagctattgtgattcacctgggtgcaacccacattctaatctaatggcttcaagga 162
             |||||| ||| | ||||||||| ||||| || |||||||||||||| | |||||| ||||
Sbjct: 25216 gatccatctactctgattcaccagggtgtaatccacattctaatctgacggcttccagga 25275

                                      
Query: 163   gctgcggtgatatcacctccttttc 187
             |||| ||||||||||||||||||||
Sbjct: 25276 gctgaggtgatatcacctccttttc 25300



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 63/70 (90%)
 Strand = Plus / Plus

                                                                         
Query: 234   gctccccaacctctgtacaaaatcactttgtttggttctcgcgacacaagaaccgatcct 293
             ||||||||||| |||||||||||||||||||| || || |||||||| ||||||||||| 
Sbjct: 25350 gctccccaacccctgtacaaaatcactttgttgggctcccgcgacactagaaccgatcca 25409

                       
Query: 294   gttgcctcct 303
             ||||| ||||
Sbjct: 25410 gttgcttcct 25419
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>gb|AC102588.7| Mus musculus chromosome 18, clone RP23-334D14, complete sequence
          Length = 201055

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 334  ttccatctgctctgttcttaa 354
            |||||||||||||||||||||
Sbjct: 7786 ttccatctgctctgttcttaa 7806
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>gb|AC093349.6| Mus musculus chromosome 19, clone RP23-16C14, complete sequence
          Length = 227274

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 50   aagtaaacaaagcagaagacc 70
            |||||||||||||||||||||
Sbjct: 9756 aagtaaacaaagcagaagacc 9776
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>emb|BX088690.9| Zebrafish DNA sequence from clone CH211-211A20 in linkage group 18,
             complete sequence
          Length = 218713

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 52    gtaaacaaagcagaagaccagtgga 76
             ||||||| |||||||||||||||||
Sbjct: 26338 gtaaacacagcagaagaccagtgga 26314
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>emb|CR788229.7| Zebrafish DNA sequence from clone DKEY-261F4 in linkage group 18,
             complete sequence
          Length = 127565

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 52    gtaaacaaagcagaagaccagtgga 76
             ||||||| |||||||||||||||||
Sbjct: 30067 gtaaacacagcagaagaccagtgga 30043
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>gb|AC114409.17| Mus musculus chromosome 5, clone RP23-148F6, complete sequence
          Length = 222692

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 2      atcttcccaaaaaacaaaga 21
              ||||||||||||||||||||
Sbjct: 189758 atcttcccaaaaaacaaaga 189777
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>emb|CR381707.2| Human DNA sequence from clone RP5-824I19 on chromosome 22q12.2-13.1,
            complete sequence
          Length = 4534

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 9    caaaaaacaaagaggatcaa 28
            ||||||||||||||||||||
Sbjct: 2607 caaaaaacaaagaggatcaa 2588
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>emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome E of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 2234072

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 305     tagttctgatatcagctgtt 324
               ||||||||||||||||||||
Sbjct: 1766512 tagttctgatatcagctgtt 1766493
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>gb|AC053481.13| Homo sapiens chromosome 17, clone RP11-51L5, complete sequence
          Length = 176235

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 173  tatcacctccttttctccca 192
            ||||||||||||||||||||
Sbjct: 9897 tatcacctccttttctccca 9878
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>emb|BX649410.18| Mouse DNA sequence from clone RP23-168C6 on chromosome 4 Contains a
             ribosomal protein S6 (Rps6) pseudogene and a novel gene,
             complete sequence
          Length = 231582

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 290   tcctgttgcctcctctagtt 309
             ||||||||||||||||||||
Sbjct: 47460 tcctgttgcctcctctagtt 47441
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>gb|AC104640.3| Homo sapiens 3 BAC RP11-809F4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 181345

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 136   cacattctaatctaatggct 155
             ||||||||||||||||||||
Sbjct: 31029 cacattctaatctaatggct 31048
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>emb|BX005076.13| Zebrafish DNA sequence from clone DKEY-7N16 in linkage group 25,
             complete sequence
          Length = 207084

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    gaagtaaacaaagcagaaga 68
             ||||||||||||||||||||
Sbjct: 39679 gaagtaaacaaagcagaaga 39660
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>gb|AC101685.9| Mus musculus chromosome 5, clone RP23-187K3, complete sequence
          Length = 185522

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 2      atcttcccaaaaaacaaaga 21
              ||||||||||||||||||||
Sbjct: 150559 atcttcccaaaaaacaaaga 150540
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>gb|AC008026.7| Homo sapiens chromosome 17, clone RP11-464D20, complete sequence
          Length = 220184

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 173    tatcacctccttttctccca 192
              ||||||||||||||||||||
Sbjct: 168129 tatcacctccttttctccca 168110
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>emb|CR548631.18| Zebrafish DNA sequence from clone CH211-117I20 in linkage group 6,
             complete sequence
          Length = 169904

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     ttcccaaaaaacaaagagga 24
             ||||||||||||||||||||
Sbjct: 41294 ttcccaaaaaacaaagagga 41275


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,002,000
Number of Sequences: 3902068
Number of extensions: 4002000
Number of successful extensions: 72157
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72081
Number of HSP's gapped (non-prelim): 75
length of query: 457
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 435
effective length of database: 17,147,199,772
effective search space: 7459031900820
effective search space used: 7459031900820
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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