ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags37j19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KCNG2_RAT (Q9QYU3) Potassium voltage-gated channel subfamily G m... 31 3.4
2ATG26_YARLI (Q6C8M8) Sterol 3-beta-glucosyltransferase (EC 2.4.1... 30 4.4
3S230_PLAFO (P68875) Transmission-blocking target antigen S230 pr... 30 4.4
4S230_PLAF7 (P68874) Transmission-blocking target antigen S230 pr... 30 4.4
5KCNG2_HUMAN (Q9UJ96) Potassium voltage-gated channel subfamily G... 30 7.5
6Y1265_HAEIN (P44144) Hypothetical UPF0142 protein HI1265 30 7.5

>KCNG2_RAT (Q9QYU3) Potassium voltage-gated channel subfamily G member 2|
           (Voltage-gated potassium channel subunit Kv6.2) (Cardiac
           potassium channel subunit)
          Length = 480

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = -2

Query: 143 CHDPCR---CL*TICVFWFKFMA*ISSAFMYQ*CGYFSGPRCVVNIRAIL 3
           C   CR    L T+CV WF F   + S      C +   P  +++I AIL
Sbjct: 224 CSTKCRNLFVLETVCVAWFSFEFLLRSLQAESKCAFLRTPLAIIDILAIL 273



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>ATG26_YARLI (Q6C8M8) Sterol 3-beta-glucosyltransferase (EC 2.4.1.173)|
           (Autophagy-related protein 26)
          Length = 1424

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -1

Query: 534 FQQTFECLPDEKLKKAYACYLSTSHGPIMGVLYVSTAKLAFCS 406
           FQ+ F    +E+L  +Y C+L     P  G +YVST  + F S
Sbjct: 797 FQKRFALGTEERLIASYHCHLHRGGIPTYGKMYVSTNYVTFRS 839



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>S230_PLAFO (P68875) Transmission-blocking target antigen S230 precursor|
          Length = 3135

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 16/64 (25%), Positives = 28/64 (43%)
 Frame = -1

Query: 570 SKVKAEGGYDKIFQQTFECLPDEKLKKAYACYLSTSHGPIMGVLYVSTAKLAFCSDSPVA 391
           ++++ +   +KI  +TF      K    Y CY+    G I G+L+    K   C +  + 
Sbjct: 751 NQIEEDEHNEKIKMKTFFTQNIYKKNNIYPCYMKLYSGDIGGILFPKNIKSTTCFEEMIP 810

Query: 390 YVTE 379
           Y  E
Sbjct: 811 YNKE 814



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>S230_PLAF7 (P68874) Transmission-blocking target antigen S230 precursor|
          Length = 3135

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 16/64 (25%), Positives = 28/64 (43%)
 Frame = -1

Query: 570 SKVKAEGGYDKIFQQTFECLPDEKLKKAYACYLSTSHGPIMGVLYVSTAKLAFCSDSPVA 391
           ++++ +   +KI  +TF      K    Y CY+    G I G+L+    K   C +  + 
Sbjct: 751 NQIEEDEHNEKIKMKTFFTQNIYKKNNIYPCYMKLYSGDIGGILFPKNIKSTTCFEEMIP 810

Query: 390 YVTE 379
           Y  E
Sbjct: 811 YNKE 814



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>KCNG2_HUMAN (Q9UJ96) Potassium voltage-gated channel subfamily G member 2|
           (Voltage-gated potassium channel subunit Kv6.2) (Cardiac
           potassium channel subunit)
          Length = 466

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = -2

Query: 143 CHDPCRCL*---TICVFWFKFMA*ISSAFMYQ*CGYFSGPRCVVNIRAIL 3
           C   CR L    T+CV WF F   + S      C +   P  +++I A+L
Sbjct: 211 CSPKCRSLFVLETVCVAWFSFEFLLRSLQAESKCAFLRAPLNIIDILALL 260



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>Y1265_HAEIN (P44144) Hypothetical UPF0142 protein HI1265|
          Length = 587

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
 Frame = +1

Query: 199 ETLHSAVVVDEAHEPEVMVINRNYLDVPLCRILLTSGRGD*SQMRYRYNYLV--NGGLG- 369
           E  ++ + +  A E EV V++ N+LDV  CRI++  G  D     Y  + L+  N  +G 
Sbjct: 355 EEYNNLMAIFRADEKEVYVMDYNHLDVYACRIIV-PGMSD----IYPADDLIYANNNMGM 409

Query: 370 -----LIILSDICHGAVTTK---SKLGGRDVQDA 447
                L+ L +  H A T +    +L G+D+ DA
Sbjct: 410 DWREILLDLPNWHHDAETYQELLEELDGQDIDDA 443


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,799,714
Number of Sequences: 219361
Number of extensions: 1889209
Number of successful extensions: 4457
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4456
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5653129581
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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