>A1AT_RAT (P17475) Alpha-1-antiproteinase precursor (Alpha-1-antitrypsin)|
           (Alpha-1-proteinase inhibitor)
          Length = 411

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 317 ACMKRLYGLAAAGIRLRGSTMATALP*SVPPQVKF 213
           A  K +  L   G    G+T+  A+P S+PPQVKF
Sbjct: 350 AVHKAVLTLDERGTEAAGATVVEAVPMSLPPQVKF 384

>RECG_TREPA (P96130) ATP-dependent DNA helicase recG (EC 3.6.1.-)|
          Length = 686

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 145 RTSTRTFSQWTGLQALQLRVEPVNLTWGGTDHGRAVAIV 261
           RT  + FSQWT    LQ+RV      W G    + + +V
Sbjct: 46  RTQEQMFSQWTLAHRLQVRVSVTAHCWFGFGKSKTLKLV 84

>RPOA_CUSRE (Q8SKY1) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 335

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 326 KKVACMKRLYGLAAAGIRLRGSTMATALP*SVPPQVKFTGSTR 198
           K++     LYG   A I ++G    TA    +PP V+   ST+
Sbjct: 92  KEIVLRSNLYGTCDASISIKGPGYVTAEDIILPPHVEIVDSTQ 134

>COA3_AAV2 (P03135) Probable coat protein 3|
          Length = 504

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 298 MVWQQREFACEGPLWRPLCH 239
           MVWQ R+   +GP+W  + H
Sbjct: 400 MVWQDRDVYLQGPIWAKIPH 419

>GUAA_LACJO (Q74LF7) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)|
           (Glutamine amidotransferase) (GMP synthetase)
          Length = 517

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 19  IVLSENP*ILYDRLCLRIGPLLFSLGIQLITI 114
           I+ S  P  +YD+  L++ P +F LGI ++ I
Sbjct: 56  IIFSGGPNSVYDKGALKVDPEIFKLGIPILGI 87

>Y1409_SYNY3 (P73594) Hypothetical WD-repeat protein slr1409|
          Length = 326

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 14/57 (24%), Positives = 23/57 (40%)
 Frame = +2

Query: 38  RKFCTTDCALE*VHYCSHWEFSXXXXXXXXXXXWTAEPAHVHSHSGQVSKHFNSELN 208
           R+F  +D A+  +H+    +F            WT E   +    GQ    FN+ L+
Sbjct: 43  RQFTGSDVAINRIHFSPDGQFLLTAAADGVGTLWTKEGEMLGQLQGQKPPMFNARLS 99

>MATK_PSINU (Q8WI35) Maturase K (Intron maturase)|
          Length = 503

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +1

Query: 52  DRLCLRIGPLLFSLGIQLITIMSQQIVPLDCRTSTRTFSQWTGLQAL 192
           DR  L+I   LF    + +T++ + I+P++ R   +  S+W  LQ++
Sbjct: 85  DRKNLKINRSLF----EGLTVLFEMIIPVESRPLVQYQSEWNSLQSI 127

>RPOA_CUSJA (Q49CA2) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 332

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -1

Query: 326 KKVACMKRLYGLAAAGIRLRGSTMATALP*SVPPQVKFTGSTR 198
           K++     LYG   A I  +G    TA    +PP V+   ST+
Sbjct: 92  KEIVLRSNLYGTCDASISFKGPGYVTAEDIILPPHVEIVDSTQ 134

>TF2B_METMA (Q977U3) Transcription initiation factor IIB (TFIIB)|
          Length = 337

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 280 EFACEGPLWRPLCHDQYLPRS 218
           +F  EGP WR   HDQ + RS
Sbjct: 70  DFVDEGPEWRAFDHDQRMKRS 90

>TF2B_METAC (Q8TT29) Transcription initiation factor IIB (TFIIB)|
          Length = 337

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 280 EFACEGPLWRPLCHDQYLPRS 218
           +F  EGP WR   HDQ + RS
Sbjct: 70  DFVDEGPEWRAFDHDQRMKRS 90

>RPOA_OENHO (Q9MTJ3) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 367

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -1

Query: 326 KKVACMKRLYGLAAAGIRLRGSTMATALP*SVPPQVKFTGSTRS-*SAWRPVH 171
           K++     LYG   A I ++G    TA    +PP V+   +T+   S   P+H
Sbjct: 93  KEIVLRSNLYGTCNASICVKGPGCVTAQDILLPPSVEIIDNTQHIASLMEPIH 145

>GUAA_CHLCH (Q3AT13) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)|
           (Glutamine amidotransferase) (GMP synthetase)
          Length = 511

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 19  IVLSENP*ILYDRLCLRIGPLLFSLGIQLITI 114
           I+LS  P  +YD+      P +FSLGI ++ I
Sbjct: 48  IILSGGPNSVYDQTAFMPDPAIFSLGIPVLGI 79

>A1AT_PIG (P50447) Alpha-1-antitrypsin precursor (Alpha-1 protease inhibitor)|
           (Alpha-1-antiproteinase)
          Length = 421

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 281 GIRLRGSTMATALP*SVPPQVKF 213
           G    G+T+  A+P S+PP VKF
Sbjct: 371 GTEATGATILEAIPMSIPPNVKF 393

>CILA_ECOLI (P75726) Citrate lyase alpha chain (EC 4.1.3.6) (Citrase alpha|
           chain) (Citrate (pro-3S)-lyase alpha chain) (Citrate
           CoA-transferase subunit) (EC 2.8.3.10)
          Length = 510

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 143 AEPAHVHSHSGQVSKHFNSELNL 211
           AEP  +HSH G+V    + ELN+
Sbjct: 138 AEPVQIHSHGGRVHLVQSGELNI 160

>RPOA_SPIOL (P06505) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 335

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 326 KKVACMKRLYGLAAAGIRLRGSTMATALP*SVPPQVKFTGSTR 198
           K++     LYG   A I +RG    TA    +PP V+   +T+
Sbjct: 92  KEIVLRSNLYGTCEASICVRGPRGVTAQDIILPPYVEIVDNTQ 134

>RPOA_LACSA (Q332U5) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 335

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 326 KKVACMKRLYGLAAAGIRLRGSTMATALP*SVPPQVKFTGSTR 198
           K++     LYG   A I +RG    TA    +PP V+   +T+
Sbjct: 92  KEIVLRSNLYGTCEASICVRGPGYVTAQDIILPPYVEILDNTQ 134


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,075,645
Number of Sequences: 219361
Number of extensions: 816473
Number of successful extensions: 2254
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2254
length of database: 80,573,946
effective HSP length: 88
effective length of database: 61,270,178
effective search space used: 1470484272
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)