ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal1p15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY691179.1| Cirrhinus mrigala growth hormone receptor mRNA, c... 40 4.5
2gb|AY691178.1| Catla catla growth hormone receptor mRNA, complet... 40 4.5
3emb|AL161728.25| Human DNA sequence from clone RP11-342C23 on ch... 40 4.5
4gb|AC090483.3|AC090483 Genomic sequence for Oryza sativa, Nippon... 40 4.5
5dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
6gb|AY183721.1| Nicotiana tabacum MADS box protein (Mads1;11) mRN... 40 4.5
7ref|XM_309518.2| Anopheles gambiae str. PEST ENSANGP00000012511 ... 40 4.5
8dbj|AK101675.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.5
9gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.5
10gb|AC136457.3| Mus musculus BAC clone RP23-76G19 from chromosome... 40 4.5

>gb|AY691179.1| Cirrhinus mrigala growth hormone receptor mRNA, complete cds
          Length = 2290

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 118 tcgcaacagattgtgcctttggac 141
           |||||||||||| |||||||||||
Sbjct: 233 tcgcaacagattttgcctttggac 256



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>gb|AY691178.1| Catla catla growth hormone receptor mRNA, complete cds
          Length = 2291

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 118 tcgcaacagattgtgcctttggac 141
           |||||||||||| |||||||||||
Sbjct: 236 tcgcaacagattttgcctttggac 259



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>emb|AL161728.25| Human DNA sequence from clone RP11-342C23 on chromosome 9 Contains the
             FBP1 gene for Fructose-1,6-bisphosphatase 1, a novel gene,
             the FBP2 gene for Fructose-1,6-bisphosphatase 2, a  gene
             for a putative novel protein and one CpG island, complete
             sequence
          Length = 170532

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   gtgcctttggactgcagaac 149
             ||||||||||||||||||||
Sbjct: 26274 gtgcctttggactgcagaac 26255



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>gb|AC090483.3|AC090483 Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0050M22, from chromosome 10, complete sequence
          Length = 145417

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 53/64 (82%)
 Strand = Plus / Plus

                                                                         
Query: 158   gtacattctcacagtggacaggtctccaagcacttcaactccgagttgaacctgtaaact 217
             ||||||||||| || |  || |||| |||||||||||  |||  | ||||||||||||||
Sbjct: 39508 gtacattctcagagagcccaagtcttcaagcacttcagatccttgctgaacctgtaaact 39567

                 
Query: 218   tgac 221
             ||||
Sbjct: 39568 tgac 39571



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 53/64 (82%)
 Strand = Plus / Plus

                                                                           
Query: 158     gtacattctcacagtggacaggtctccaagcacttcaactccgagttgaacctgtaaact 217
               ||||||||||| || |  || |||| |||||||||||  |||  | ||||||||||||||
Sbjct: 9406024 gtacattctcagagagcccaagtcttcaagcacttcagatccttgctgaacctgtaaact 9406083

                   
Query: 218     tgac 221
               ||||
Sbjct: 9406084 tgac 9406087



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>gb|AY183721.1| Nicotiana tabacum MADS box protein (Mads1;11) mRNA, complete cds
          Length = 2161

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 32   agaatccgtaaattttgtac 51
            ||||||||||||||||||||
Sbjct: 1228 agaatccgtaaattttgtac 1247



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>ref|XM_309518.2| Anopheles gambiae str. PEST ENSANGP00000012511
           (ENSANGG00000010022), partial mRNA
          Length = 660

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 160 acattctcacagtggacagg 179
           ||||||||||||||||||||
Sbjct: 125 acattctcacagtggacagg 144



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>dbj|AK101675.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033058F11, full
            insert sequence
          Length = 2868

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                        
Query: 158  gtacattctcacagtggacaggtctccaagcacttcaactccgagttgaacctgtaaact 217
            ||||||||||| || |  || |||| |||||||||||  |||  | ||||||||||||||
Sbjct: 2613 gtacattctcagagagcccaagtcttcaagcacttcagatccttgctgaacctgtaaact 2554

                
Query: 218  tgac 221
            ||||
Sbjct: 2553 tgac 2550



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 53/64 (82%)
 Strand = Plus / Plus

                                                                           
Query: 158     gtacattctcacagtggacaggtctccaagcacttcaactccgagttgaacctgtaaact 217
               ||||||||||| || |  || |||| |||||||||||  |||  | ||||||||||||||
Sbjct: 9412063 gtacattctcagagagcccaagtcttcaagcacttcagatccttgctgaacctgtaaact 9412122

                   
Query: 218     tgac 221
               ||||
Sbjct: 9412123 tgac 9412126



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>gb|AC136457.3| Mus musculus BAC clone RP23-76G19 from chromosome 13, complete sequence
          Length = 204369

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 13     ctccttattgttctaagtga 32
              ||||||||||||||||||||
Sbjct: 157650 ctccttattgttctaagtga 157669


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,428,661
Number of Sequences: 3902068
Number of extensions: 2428661
Number of successful extensions: 36171
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36136
Number of HSP's gapped (non-prelim): 35
length of query: 338
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 316
effective length of database: 17,147,199,772
effective search space: 5418515127952
effective search space used: 5418515127952
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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