>YPRA_ECOLI (P13974) Hypothetical 24.3 kDa protein (URF 1)|
          Length = 217

 Score = 40.4 bits (93), Expect = 0.005
 Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 7/131 (5%)
 Frame = -1

Query: 495 VLWLGLLMSVVFL-TSLIADSLIGPEDAYDPILKEILSDGGASRLVCWFLYCLI-APLSE 322
           V WL   M+VV++   L+  +L  P +   P + ++ +D     ++   L   I APL+E
Sbjct: 79  VPWLVGAMAVVYVGVFLLGKALALPAE---PFMTKLFADKSIPDVILTLLTIFILAPLNE 135

Query: 321 EIIYRGFLLTALSSSMKWRNXXXXXXXXXXXAHLSGE-----SSVQLFIVGCITGLAYCR 157
           E ++RG +L    S   W                  +     +  +LF+VG IT +A  R
Sbjct: 136 ETLFRGIMLNVFRSRYCWTMWLGALITSLLFVAAHSQYQNLLTLAELFLVGLITSVARIR 195

Query: 156 TGTLAASFTVH 124
           +G L     +H
Sbjct: 196 SGGLLLPVLLH 206

>YXDF_LACLA (Q9CDG9) Hypothetical UPF0177 protein yxdF|
          Length = 177

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
 Frame = -1

Query: 516 RGWIKETVLWLGLLMSVVFLTSLIADSLIGPEDAYDPILKEILSDGGASRLV------CW 355
           + W  + + WL   M +VF T L  + L+        I+  + SD G S ++      C 
Sbjct: 23  KNWDLKRIFWL---MGIVFFT-LATNYLVTVLVLKTQIISSVTSDTGMSDILGQLPILCQ 78

Query: 354 -FLYCLIAPLSEEIIYRGFLLTALSS 280
            ++  +I PLSEE+++R ++  ++++
Sbjct: 79  KYILGIIVPLSEELLFRSYIFGSITN 104

>FACE2_HUMAN (Q9Y256) CAAX prenyl protease 2 (EC 3.4.22.-) (Prenyl|
           protein-specific endoprotease 2) (Farnesylated
           proteins-converting enzyme 2) (FACE-2) (hRCE1)
          Length = 329

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
 Frame = -1

Query: 480 LLMSVVFLTSLIADSLIGPEDAYDPILKEILSDGGASRLVC---WFLYCLIAPLSEEIIY 310
           LL  ++FL  L+  S+  P D  D  LK +L+    +R +    W    +IAPL+EE+++
Sbjct: 121 LLTMILFLGPLMQLSMDCPCDLADG-LKVVLAPRSWARCLTDMRWLRNQVIAPLTEELVF 179

Query: 309 RGFLLTALSSSM 274
           R  +L  L+  M
Sbjct: 180 RACMLPMLAPCM 191

>FACE2_MOUSE (P57791) CAAX prenyl protease 2 (EC 3.4.22.-) (Prenyl|
           protein-specific endoprotease 2) (Farnesylated
           proteins-converting enzyme 2) (FACE-2)
          Length = 329

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
 Frame = -1

Query: 480 LLMSVVFLTSLIADSLIGPEDAYDPILKEILSDGGASRLVC---WFLYCLIAPLSEEIIY 310
           LL  ++FL  L+  S+  P D  D  LK +L+    +R +    W    +IAPL+EE+++
Sbjct: 121 LLTMILFLGPLMQLSMDCPCDLTDG-LKVVLAPRSWARCLTDMRWLRNQVIAPLTEELVF 179

Query: 309 RGFLLTALS 283
           R  +L  L+
Sbjct: 180 RACMLPMLA 188

>POTB_SHIFL (P0AFK5) Spermidine/putrescine transport system permease protein|
           potB
          Length = 275

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 15/96 (15%)
 Frame = -1

Query: 528 FSSRRGWIKETVLWLGLL---MSVVFLTSLIADSLI------------GPEDAYDPILKE 394
           F S +G++ E +LWLG++   + ++F  S +   L+               +  D  L E
Sbjct: 113 FLSTKGYLNEFLLWLGVIDTPIRIMFTPSAVIIGLVYILLPFMVMPLYSSIEKLDKPLLE 172

Query: 393 ILSDGGASRLVCWFLYCLIAPLSEEIIYRGFLLTAL 286
              D GAS+L  +    +I PL+   I  G LL  L
Sbjct: 173 AARDLGASKLQTFIR--IIIPLTMPGIIAGCLLVML 206

>POTB_ECOLI (P0AFK4) Spermidine/putrescine transport system permease protein|
           potB
          Length = 275

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 15/96 (15%)
 Frame = -1

Query: 528 FSSRRGWIKETVLWLGLL---MSVVFLTSLIADSLI------------GPEDAYDPILKE 394
           F S +G++ E +LWLG++   + ++F  S +   L+               +  D  L E
Sbjct: 113 FLSTKGYLNEFLLWLGVIDTPIRIMFTPSAVIIGLVYILLPFMVMPLYSSIEKLDKPLLE 172

Query: 393 ILSDGGASRLVCWFLYCLIAPLSEEIIYRGFLLTAL 286
              D GAS+L  +    +I PL+   I  G LL  L
Sbjct: 173 AARDLGASKLQTFIR--IIIPLTMPGIIAGCLLVML 206

>CYB_FOSFO (Q85PP1) Cytochrome b|
          Length = 379

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 22/98 (22%)
 Frame = -1

Query: 495 VLWLGLLMSVVFLTSLIADSLIGPEDAYDP---------------------ILKEILSD- 382
           +L L LL+ ++ L  L +  L+G  D Y P                     IL+ I +  
Sbjct: 229 ILGLLLLILILMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKL 288

Query: 381 GGASRLVCWFLYCLIAPLSEEIIYRGFLLTALSSSMKW 268
           GG + LV   L   I PL      RG +   LS  + W
Sbjct: 289 GGVTALVLSILILAILPLLNTSKQRGMMFRPLSQCLFW 326


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,861,115
Number of Sequences: 219361
Number of extensions: 2021167
Number of successful extensions: 5000
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4982
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6655306086
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)