ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags37i17 |
|---|---|
| Clone Library Name | barley_pub |
>S12A5_RAT (Q63633) Solute carrier family 12 member 5 (Electroneutral| potassium-chloride cotransporter 2) (K-Cl cotransporter 2) (Neuronal K-Cl cotransporter) (Furosemide-sensitive K-Cl cotransporter) (rKCC2) Length = 1116 Score = 33.5 bits (75), Expect = 0.59 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 6/75 (8%) Frame = -3 Query: 643 QFGLFYAFIDTMALVPGWLFLMIFM------TVYFFVVRRKWSPHFLRYHIILAILLDTG 482 + G+ A +D +A + FLM +M V + W P F YH L+ L + Sbjct: 546 EIGILIASLDEVAPILSMFFLMCYMFVNLACAVQTLLRTPNWRPRFRYYHWTLSFLGMSL 605 Query: 481 SQALATMCNWNPSIV 437 AL +C+W ++V Sbjct: 606 CLALMFICSWYYALV 620
>S12A5_HUMAN (Q9H2X9) Solute carrier family 12 member 5 (Electroneutral| potassium-chloride cotransporter 2) (Erythroid K-Cl cotransporter 2) (Neuronal K-Cl cotransporter) (hKCC2) Length = 1116 Score = 33.5 bits (75), Expect = 0.59 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 6/75 (8%) Frame = -3 Query: 643 QFGLFYAFIDTMALVPGWLFLMIFM------TVYFFVVRRKWSPHFLRYHIILAILLDTG 482 + G+ A +D +A + FLM +M V + W P F YH L+ L + Sbjct: 546 EIGILIASLDEVAPILSMFFLMCYMFVNLACAVQTLLRTPNWRPRFRYYHWTLSFLGMSL 605 Query: 481 SQALATMCNWNPSIV 437 AL +C+W ++V Sbjct: 606 CLALMFICSWYYALV 620
>S12A5_MOUSE (Q91V14) Solute carrier family 12 member 5 (Electroneutral| potassium-chloride cotransporter 2) (K-Cl cotransporter 2) (Neuronal K-Cl cotransporter) (mKCC2) Length = 1115 Score = 33.5 bits (75), Expect = 0.59 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 6/75 (8%) Frame = -3 Query: 643 QFGLFYAFIDTMALVPGWLFLMIFM------TVYFFVVRRKWSPHFLRYHIILAILLDTG 482 + G+ A +D +A + FLM +M V + W P F YH L+ L + Sbjct: 546 EIGILIASLDEVAPILSMFFLMCYMFVNLACAVQTLLRTPNWRPRFRYYHWTLSFLGMSL 605 Query: 481 SQALATMCNWNPSIV 437 AL +C+W ++V Sbjct: 606 CLALMFICSWYYALV 620
>S12A7_MOUSE (Q9WVL3) Solute carrier family 12 member 7 (Electroneutral| potassium-chloride cotransporter 4) (K-Cl cotransporter 4) Length = 1083 Score = 32.3 bits (72), Expect = 1.3 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 6/68 (8%) Frame = -3 Query: 637 GLFYAFIDTMALVPGWLFLMIFM------TVYFFVVRRKWSPHFLRYHIILAILLDTGSQ 476 G+ A +D++A + FLM +M V + W P F YH L+ L + Sbjct: 568 GILIASLDSVAPILSMFFLMCYMFVNLACAVQTLLRTPNWRPRFKFYHWTLSFLGMSLCL 627 Query: 475 ALATMCNW 452 AL +C+W Sbjct: 628 ALMFICSW 635
>S12A7_HUMAN (Q9Y666) Solute carrier family 12 member 7 (Electroneutral| potassium-chloride cotransporter 4) (K-Cl cotransporter 4) Length = 1083 Score = 31.2 bits (69), Expect = 2.9 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 6/68 (8%) Frame = -3 Query: 637 GLFYAFIDTMALVPGWLFLMIFM------TVYFFVVRRKWSPHFLRYHIILAILLDTGSQ 476 G+ A +D++A + FLM ++ V + W P F YH L+ L + Sbjct: 568 GILIASLDSVAPILSMFFLMCYLFVNLACAVQTLLRTPNWRPRFKFYHWTLSFLGMSLCL 627 Query: 475 ALATMCNW 452 AL +C+W Sbjct: 628 ALMFICSW 635
>GLGA_GLOVI (Q7NM37) Glycogen synthase (EC 2.4.1.21) (Starch [bacterial| glycogen] synthase) Length = 458 Score = 30.4 bits (67), Expect = 5.0 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Frame = -3 Query: 592 WLFLMIFMTVYFFVVRRKWSPHFLRYHIILAILLDTGSQALATMCNWN-PSIVFQGKPMA 416 W F + TV F+ R W P L H LL +++ M + ++ +QG P+ Sbjct: 102 WRFTLFSRTVAEFLWRGGWDPQVLHCHDWHTGLLPLWMRSMPVMTVFTIHNLAYQGPPLP 161 Query: 415 YF 410 YF Sbjct: 162 YF 163
>CYK3_YEAST (Q07533) Cytokinesis protein 3| Length = 885 Score = 30.0 bits (66), Expect = 6.5 Identities = 16/50 (32%), Positives = 24/50 (48%) Frame = +3 Query: 147 SSPYVTDTFPSHFLHPQALYLFLSHTQFLNPTYIFRCMFALANYLNRFRS 296 S+ Y+ FPS F + LY F + FL + I+ C + N + F S Sbjct: 634 SALYLPLVFPSFFKNELKLYKFSTALSFLEDSEIYECSLEIPNDVEVFAS 683
>KLRA6_MOUSE (Q60653) Killer cell lectin-like receptor 6 (T-cell surface| glycoprotein Ly-49F) (Ly49-F antigen) (Lymphocyte antigen 49F) Length = 266 Score = 30.0 bits (66), Expect = 6.5 Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 12/80 (15%) Frame = +2 Query: 356 TPHTLDNCEDLNEGQ----CHPEICHWFTLKNNAWIPVAHGCQSLRARVKKNG------- 502 T LD+ +D G C+ C++F + N W CQ + K Sbjct: 130 TKTDLDSSQDTGTGVKYWFCYRTKCYYFIMNKNTWSGCKQNCQHYSLPLVKIDDENELKF 189 Query: 503 -QYDVIPQKMWRPLPSHHKE 559 Q+ VIP W L S+ KE Sbjct: 190 LQFQVIPDSYWIGL-SYDKE 208
>PNS1_YARLI (Q6C938) Protein PNS1| Length = 571 Score = 29.6 bits (65), Expect = 8.5 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 4/110 (3%) Frame = -3 Query: 634 LFYAFIDTMALVPGWLFLMIFMTVYFFVVRRKWSPHFLRYHIILAILLDTGSQALATMCN 455 + YAF+ A+V +++ +F+ R W+ F+ IL +L G+ + Sbjct: 168 ILYAFVLATAMV---------LSLLYFIAARVWTKQFIWITYILHLLFSWGTAIYYLVVG 218 Query: 454 WNPS----IVFQGKPMAYFWMTLAFIQIFTVVECMRCALSGMYPNVPFIS 317 + + IVF +FW + I T+V ++ P+V IS Sbjct: 219 YYSAGIVFIVFAALTTWWFWCSRKRIPFATIVLQTLIDVTRANPSVLVIS 268 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 101,737,499 Number of Sequences: 219361 Number of extensions: 2128758 Number of successful extensions: 4890 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 4710 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4890 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6427774254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
