ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags37i16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UROM_CANFA (Q862Z3) Uromodulin precursor (Tamm-Horsfall urinary ... 32 2.1
2YLXF_BACSU (P23454) FlaA locus 22.9 kDa protein (ORF 6) 30 6.1

>UROM_CANFA (Q862Z3) Uromodulin precursor (Tamm-Horsfall urinary glycoprotein)|
           (THP)
          Length = 642

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -3

Query: 353 LGSCEGCALPEACHQ*SNRTSLCLSYHFDCTDLFIHVNNLQCK 225
           LG+CE C++ E C       S      F+ TDLF+ ++ L+C+
Sbjct: 296 LGTCEECSVEEDCKSHDGMWSCQCKQDFNVTDLFL-LDRLECR 337



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>YLXF_BACSU (P23454) FlaA locus 22.9 kDa protein (ORF 6)|
          Length = 213

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query: 314 DRLPEE-RILHKTPDNQKRTKQDHPPRINDANECSSNTEVAS 436
           DRL ++ R L KT ++QK++ +DH     D+   S N +V S
Sbjct: 105 DRLNQKIRSLEKTAEDQKKSSEDHTEGSADSKASSENDKVIS 146


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,005,001
Number of Sequences: 219361
Number of extensions: 1719452
Number of successful extensions: 4312
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4312
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5995743495
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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