>RL28_DROME (Q9VZS5) 60S ribosomal protein L28|
          Length = 144

 Score = 85.5 bits (210), Expect = 1e-16
 Identities = 56/127 (44%), Positives = 75/127 (59%), Gaps = 1/127 (0%)
 Frame = -3

Query: 573 RKNNCFLIKQFGNSNAKVQFSKEPNNLYNVHSYKYSGLANKKTVTVQPAAEKE-MTVVLS 397
           R NN FL+K+    + K  FS EPNNL +V SY+YSG+ +KKT+ V PAA+K+  T VL 
Sbjct: 13  RNNNAFLLKK---RDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPAADKKGFTAVLK 69

Query: 396 TTKSKKQNKPAAFTHKTVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSAVYRSLQV 217
             K K   +PA  T +   +   R+  K +KN +  + YR DLT+ AL R SAV RS + 
Sbjct: 70  --KGKYAQRPAKNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQAALRRASAVLRSQKP 127

Query: 216 AKSGVKK 196
           A    KK
Sbjct: 128 APVKGKK 134

>RL28_SPOFR (Q962T2) 60S ribosomal protein L28|
          Length = 139

 Score = 82.4 bits (202), Expect = 8e-16
 Identities = 54/127 (42%), Positives = 74/127 (58%), Gaps = 5/127 (3%)
 Frame = -3

Query: 573 RKNNCFLIKQFGNSNAKVQFSKEPNNLYNVHSYKYSGLANKKTV-TVQPAAEKEMTVVLS 397
           R NN FL+K+    N K  FSKEPNN+ N++SY+Y+GL  KK V  V+    K  TVV  
Sbjct: 11  RNNNAFLVKK---RNIKKPFSKEPNNVTNLNSYRYNGLIQKKAVGVVENPDRKGFTVVYK 67

Query: 396 TTKSKKQNKPAAFTHKTVMRKEFRKMAK----AVKNQVSDNYYRPDLTKPALARLSAVYR 229
             K+K  NKPA    K  +R++F+  A+     VK  +  N+YR DL+K  L R SA+ R
Sbjct: 68  --KAKATNKPA----KNAVRRQFKAGARRSLYKVKRLLKANHYRTDLSKATLRRASAILR 121

Query: 228 SLQVAKS 208
           S +  K+
Sbjct: 122 SQRPIKA 128

>RL28_MOUSE (P41105) 60S ribosomal protein L28|
          Length = 136

 Score = 75.9 bits (185), Expect = 8e-14
 Identities = 46/115 (40%), Positives = 68/115 (59%), Gaps = 2/115 (1%)
 Frame = -3

Query: 564 NC--FLIKQFGNSNAKVQFSKEPNNLYNVHSYKYSGLANKKTVTVQPAAEKEMTVVLSTT 391
           NC  FLIK+      K  +S EPNNL   +S++Y+GL ++KTV V+PAA+ +  VV+   
Sbjct: 11  NCSSFLIKR-----NKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKR 65

Query: 390 KSKKQNKPAAFTHKTVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSAVYRS 226
           +S  Q KPA    +T + K  R    ++++ +  N YRPDL   A+ R SA+ RS
Sbjct: 66  RS-GQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRS 119

>RL28_HUMAN (P46779) 60S ribosomal protein L28|
          Length = 136

 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 46/115 (40%), Positives = 68/115 (59%), Gaps = 2/115 (1%)
 Frame = -3

Query: 564 NC--FLIKQFGNSNAKVQFSKEPNNLYNVHSYKYSGLANKKTVTVQPAAEKEMTVVLSTT 391
           NC  FLIK+      K  +S EPNNL   +S++Y+GL ++KTV V+PAA+ +  VV+   
Sbjct: 11  NCSSFLIKR-----NKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKR 65

Query: 390 KSKKQNKPAAFTHKTVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSAVYRS 226
           +S  Q KPA    +T + K  R    ++++ +  N YRPDL   A+ R SA+ RS
Sbjct: 66  RS-GQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRS 119

>RL28_RAT (P17702) 60S ribosomal protein L28|
          Length = 136

 Score = 68.2 bits (165), Expect = 2e-11
 Identities = 43/115 (37%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
 Frame = -3

Query: 564 NC--FLIKQFGNSNAKVQFSKEPNNLYNVHSYKYSGLANKKTVTVQPAAEKEMTVVLSTT 391
           NC  FLIK+      K  +S EPNNL   +S++Y+GL ++KTV V+   + +  VV+   
Sbjct: 11  NCSSFLIKR-----NKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEAWPDGKGVVVVMKR 65

Query: 390 KSKKQNKPAAFTHKTVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSAVYRS 226
           +S  Q KPA    +T + K  R    ++++ +  N YRPDL   A+ R SA+ RS
Sbjct: 66  RSG-QRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRS 119

>YFF6_SCHPO (O14069) Probable 60S ribosomal protein C1687.06c|
          Length = 134

 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 44/125 (35%), Positives = 67/125 (53%), Gaps = 3/125 (2%)
 Frame = -3

Query: 573 RKNNCFLIK--QFGNSNAKVQFSKEPNNLYNVHSYKYSGLANKKTVTVQPAAEKEMTVVL 400
           R NN FL+K  +FG     +QF++EP N+   ++ ++SGL N K V VQ A      V++
Sbjct: 13  RDNNRFLVKRPEFGG----IQFNREPVNVSGKNAQRFSGLCNDKAVGVQ-ANSPRGVVLI 67

Query: 399 STTKSKKQNKPAAFTHKTVM-RKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSAVYRSL 223
           + T  K   KPA    K V+     RK  K++  ++    YR DL K ++AR SA+  S 
Sbjct: 68  TKTNPKNAQKPAKLFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSVARASAILSSQ 127

Query: 222 QVAKS 208
           +  K+
Sbjct: 128 RPKKT 132

>RL28_DICDI (Q9GS21) 60S ribosomal protein L28|
          Length = 132

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 47/131 (35%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
 Frame = -3

Query: 573 RKNNCFLIKQFGNSNAKVQFSKEPNNLYNVHSYKYSGLANKKTVTVQPAAEKEMTVVLST 394
           +KNN FL    G     +  S EP NL N +S KYSGLA + T+ V     K   VV+S+
Sbjct: 11  KKNNAFLKSSHG-----LTLSAEPGNLRNKNSLKYSGLARRTTIDVAAVNGK---VVVSS 62

Query: 393 TKSKKQNKPAAFTHKTVMRK-EFRKMAKAVKNQVSDNYYRPDLTKPALARLSAVYRSLQV 217
              KK   PA     T       RK A+ VK   +   Y P+L   AL RL  V  +L+ 
Sbjct: 63  KIVKKAAFPAQSKKTTTFSTVNTRKTARFVKTLATQ--YAPELRAAALGRLHRVQSALRS 120

Query: 216 AKSGVKKKNRQ 184
           AK    +K ++
Sbjct: 121 AKKAAARKAKK 131

>RL28_CAEEL (Q21930) 60S ribosomal protein L28|
          Length = 125

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 44/126 (34%), Positives = 63/126 (50%)
 Frame = -3

Query: 573 RKNNCFLIKQFGNSNAKVQFSKEPNNLYNVHSYKYSGLANKKTVTVQPAAEKEMTVVLST 394
           R N+ FL  Q G      +FS E  NL  V+S KYSGLANK  + V  AA+     V+ +
Sbjct: 10  RNNSAFLRTQRGIGK---RFSTEKFNLKKVNSPKYSGLANKHAIDVSAAAKG----VVVS 62

Query: 393 TKSKKQNKPAAFTHKTVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSAVYRSLQVA 214
           TK++K     A T  T+ +     + +  KN   + +      K A  R +A+ RS QV 
Sbjct: 63  TKNEKGRPAKAVTTSTLSKTPVASVRRLAKNAGFNKF-----NKLAQRRAAAIVRS-QVK 116

Query: 213 KSGVKK 196
           K+ V+K
Sbjct: 117 KAKVQK 122

>H1A_XENLA (P06892) Histone H1A|
          Length = 209

 Score = 33.1 bits (74), Expect = 0.58
 Identities = 24/89 (26%), Positives = 37/89 (41%)
 Frame = -3

Query: 459 ANKKTVTVQPAAEKEMTVVLSTTKSKKQNKPAAFTHKTVMRKEFRKMAKAVKNQVSDNYY 280
           A KK   +   A+K       T KS K+ K  +   K+   K+ +K AKA K+       
Sbjct: 122 AAKKKAPLAAEAKKPAAAAKKTAKSPKKPKKVSAAAKSP--KKLKKPAKAAKSPAKKTAV 179

Query: 279 RPDLTKPALARLSAVYRSLQVAKSGVKKK 193
           +P +   + A+  A    +  AK    KK
Sbjct: 180 KPKVAAKSPAKAKAAKPKVAKAKKAAPKK 208

>VWF_MOUSE (Q8CIZ8) Von Willebrand factor precursor (vWF) [Contains: Von|
            Willebrand antigen II]
          Length = 2813

 Score = 32.7 bits (73), Expect = 0.76
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = -2

Query: 358  HPQDCHAQGVPQDGQGCQEPGXXXXXXXXXXXACSCKTERSLPQPPGCQVWCQE 197
            H Q+CH  GV    + CQEPG           + +       P+PP    +C +
Sbjct: 1221 HCQNCHCDGVNLTCEACQEPGGLVAPPTDAPVSSTTPYVEDTPEPPLHNFYCSK 1274

>DCPS_RAT (Q8K4F7) Scavenger mRNA decapping enzyme DcpS (EC 3.-.-.-) (DCS-1)|
           (Hint-related 7meGMP-directed hydrolase) (Histidine
           triad protein member 5) (HINT-5)
          Length = 336

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = -3

Query: 540 GNSNAKVQFSKEPNNLYNVHSYKYSGLANKKTVTVQPAAEKEM 412
           GN   K+QFS +  + YN+   ++  L++ KT  V PA+EK +
Sbjct: 99  GNPELKLQFSNDIYSTYNLFPPRH--LSDIKTTVVYPASEKHL 139

>CSTN2_RAT (Q8VDA1) Calsyntenin-2 precursor|
          Length = 965

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 18/44 (40%), Positives = 27/44 (61%)
 Frame = +1

Query: 31  GTDIEPSENTCAGIQAHHSSYSTSILLEQI*KVGNINQRIHKIS 162
           G DI   E+   GI+ +H + S SIL+ +   +GNINQ + K+S
Sbjct: 546 GLDINSLESLGRGIK-YHFNPSQSILVMEGDDIGNINQALQKVS 588

>SPEA_PROMA (Q7VEG4) Biosynthetic arginine decarboxylase (EC 4.1.1.19) (ADC)|
          Length = 648

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
 Frame = -3

Query: 510 KEPNNLYNVHSY--KYSGLANKKTVTVQPAAEK----EMTVVLSTTKSKKQNKPAAFTHK 349
           K+  +LY +  +  +Y  + +   VTV P  ++    E+T +L   K +  N P      
Sbjct: 16  KDSCSLYGLDLWGEEYFSINDSGNVTVSPQGKEGNSLELTHLLEELKGRNLNTPLLLRFD 75

Query: 348 TVMRKEFRKMAKAVKNQVSDNYYRPD 271
            ++    +K+ +A +N ++   Y  D
Sbjct: 76  DILEDRLKKLHQAFENAINQYGYNND 101

>PSV_DICDI (P08798) Prespore vesicle protein precursor (PSV)|
          Length = 513

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -2

Query: 454 QEDCDGAACC*EGDDCGPLHNQVKEAEQACGLHPQDCHAQGVPQDGQGCQE 302
           ++DC G  CC EG  C  L     + ++ C  +P D   +G    G  C+E
Sbjct: 86  KKDCGGTGCCKEGQYCTKL-----DGKEQCVYYPDD---KGPQCGGSFCRE 128

>FINC_PLEWA (Q91289) Fibronectin (FN) (Fragment)|
          Length = 1328

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = -3

Query: 438 VQPAAEKEMTVVLSTTK--SKKQNKPAAFTHKTVMRKEFRKMAKAVKNQVSDNYYRPDLT 265
           ++P AE  +TV   T +  S   +KP   THKTV+ K  +     V++      + P  T
Sbjct: 445 LKPGAEYIITVYAVTGRGDSPASSKPVTVTHKTVVDKPTQLQVTDVQDHSIQVRWMPSST 504

Query: 264 KPALARLSAVYRSLQVAKSGV 202
            P        YR   V KSGV
Sbjct: 505 -PVTG-----YRVTSVPKSGV 519

>RL23A_TRYBB (P41165) 60S ribosomal protein L23a (L25)|
          Length = 164

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
 Frame = -3

Query: 402 LSTTKSKK---QNKPAAF-----THKTVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALAR 247
           L+T K+ K   +N    F      +KT ++K  RK+ + VK    +   RPD  K A  R
Sbjct: 89  LTTDKAMKKIEENNTLTFIVDSRANKTEIKKAIRKLYQ-VKTVKVNTLIRPDGLKKAYIR 147

Query: 246 LSAVYRSLQVA 214
           LSA Y +L  A
Sbjct: 148 LSASYDALDTA 158

>RPOC2_PSEAK (Q3ZJ90) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)|
            (Plastid-encoded RNA polymerase beta'' subunit) (RNA
            polymerase beta'' subunit)
          Length = 3462

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
 Frame = -3

Query: 570  KNNCFL-IKQFGNSNAKVQFSKEPNNLYNVHSYKYSGLANKKT---VTVQPAAEKEMTVV 403
            KN CF    + G    K  +  +PN +++ + +        KT    T +P  +K  + +
Sbjct: 1054 KNPCFYAFGKIGFLRGKTDYG-QPNKIFSSNLFNLKKGWKTKTEGRFTNRPNKQKFKSFI 1112

Query: 402  LSTTKSKKQNKPAAFTHKTVMRKEFRKMAKAVKNQVSDNYY 280
             S  KS   NK            +F K+   V NQ+++N++
Sbjct: 1113 NSVEKSGPLNKKIFQNEGPFALNDFTKIQPIVGNQLNENFF 1153

>CSTN2_MOUSE (Q9ER65) Calsyntenin-2 precursor|
          Length = 966

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 17/44 (38%), Positives = 27/44 (61%)
 Frame = +1

Query: 31  GTDIEPSENTCAGIQAHHSSYSTSILLEQI*KVGNINQRIHKIS 162
           G DI   E+   GI+ +H + S SIL+ +   +GNIN+ + K+S
Sbjct: 546 GLDINSLESLGRGIK-YHFNPSQSILVMEGDDIGNINRALQKVS 588

>H1C_CHITE (P40277) Histone H1C|
          Length = 221

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
 Frame = -3

Query: 432 PAAEKEMTVVLSTTKSKKQN--KPAAF----THKTVMRKEFRKMAKAVKNQVSDNYYRPD 271
           PAA K+  VV  T K  K+   KP+        KT+ +K     A  +K  V+    +P 
Sbjct: 111 PAAAKKEKVVKKTEKKPKKAAAKPSKAGEKKVKKTIAKKPKAATATKIKKPVAKTTKKPA 170

Query: 270 LTKPALARLSAVYRSLQVAKSGVKKK 193
             KPA  + +   ++    K+  K K
Sbjct: 171 AAKPAAKKAAPKPKAAPKPKAAPKPK 196

>H13_GLYBA (P40265) Histone H1-III|
          Length = 228

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
 Frame = -3

Query: 432 PAAEKEMTVVLSTTKSKKQNKPAAFT--------HKTVMRKEFRKMAKAVKNQVSDNYYR 277
           PAA K+  V  +  K+  + KP A           K++ +K     A  VK  V+ +  +
Sbjct: 112 PAAAKKEKVAKTPKKAAGEKKPQAAAKPKKALEKKKSIAKKPKAATATKVKKPVAKSTKK 171

Query: 276 PDLTKPALARLSAVYRSLQVAKSGVKKK 193
           P   KPA  + +   ++    K+  K K
Sbjct: 172 PAAVKPAAKKAAPKPKAAPKPKAATKPK 199

>CSTN2_HUMAN (Q9H4D0) Calsyntenin-2 precursor|
          Length = 955

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 17/44 (38%), Positives = 27/44 (61%)
 Frame = +1

Query: 31  GTDIEPSENTCAGIQAHHSSYSTSILLEQI*KVGNINQRIHKIS 162
           G DI   E+   GI+ +H + S SIL+ +   +GNIN+ + K+S
Sbjct: 544 GLDINSLESLGQGIK-YHFNPSQSILVMEGDDIGNINRALQKVS 586


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,795,120
Number of Sequences: 219361
Number of extensions: 1156060
Number of successful extensions: 3578
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 3406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3569
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4872342800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)