ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags37i06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TRPE_SYNY3 (P20170) Probable anthranilate synthase component 1 (... 32 2.8
2CEBP_DROME (Q02637) CCAAT/enhancer-binding protein (C/EBP) (Slow... 31 3.6
3YBG0_YEAST (P34225) Hypothetical 78.8 kDa protein in SKT5-SHP1 i... 31 4.7
4CCNB2_RANJA (O93229) G2/mitotic-specific cyclin-B2 30 6.2

>TRPE_SYNY3 (P20170) Probable anthranilate synthase component 1 (EC 4.1.3.27)|
           (Anthranilate synthase component I)
          Length = 508

 Score = 31.6 bits (70), Expect = 2.8
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = +2

Query: 125 TLSRKPNLTGSSLPNMLKAT-----SSVLLYYGTEGVSNTHISKRTML*VERPDRLH 280
           T+S  P +    + N L+       S V  YY  EG  NT I+ RTM+  E+PD  H
Sbjct: 414 TVSGAPKIRAMEIINELEPERRGPYSGVYGYYDFEGQLNTAIAIRTMVVQEQPDGAH 470



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>CEBP_DROME (Q02637) CCAAT/enhancer-binding protein (C/EBP) (Slow border cell|
           protein)
          Length = 449

 Score = 31.2 bits (69), Expect = 3.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 52  HYKLHKPHMHTPHKAQEQHRNHQLHTIKK 138
           H KLH    H  H+ Q+QHR H    + K
Sbjct: 333 HSKLHAQQQHQQHQQQQQHRKHSNKHVDK 361



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>YBG0_YEAST (P34225) Hypothetical 78.8 kDa protein in SKT5-SHP1 intergenic|
           region
          Length = 687

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = -1

Query: 493 PPVGQSLISEINKHIEGHLCYEFPSTLNQLVSVDLEEGTWMSLRSESEETVVDIWEF 323
           P +G  L+ E  K +E     E    L +L++   + G W+   +E ++ +V+IW F
Sbjct: 592 PLLGLELLYEDAKDVE---MVELKERLKELMNFTRQLGIWIDKHNEIKDKLVEIWSF 645



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>CCNB2_RANJA (O93229) G2/mitotic-specific cyclin-B2|
          Length = 392

 Score = 30.4 bits (67), Expect = 6.2
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -1

Query: 466 EINKHIEGHLCYEFPSTLNQLVSVDLEEGTWMSLRSESEETVVDIWEFI 320
           +++   E  LC  F   LN +V +D E+G    L S   E VVDI+ ++
Sbjct: 92  DVSMKEEEELCQAFSEVLNHVVDIDAEDGGNPQLCS---EYVVDIYNYL 137


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,222,872
Number of Sequences: 219361
Number of extensions: 2313044
Number of successful extensions: 6387
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6350
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7932903580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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