ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags37i03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_463918.1| Oryza sativa (japonica cultivar-group), mRNA 103 6e-19
2dbj|AK110925.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 6e-19
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
4dbj|AP004078.3| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
5gb|AY928082.1| Zea mays cultivar B73 terpene synthase 3 (TPS3) m... 56 1e-04
6ref|NM_197111.1| Oryza sativa (japonica cultivar-group) putative... 48 0.031
7gb|AC146481.2| Oryza sativa chromosome 10 B1288B10 genomic sequ... 48 0.031
8gb|AC090120.8| Oryza sativa chromosome 10 BAC OSJNBb0049A16 geno... 48 0.031
9dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.031
10gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 48 0.031
11gb|AC147095.2| Pan troglodytes BAC clone RP43-51E22 from 7, comp... 44 0.49
12gb|AC073109.2| Homo sapiens BAC clone RP11-502P9 from 7, complet... 44 0.49
13gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta... 44 0.49
14emb|AL596025.22| Mouse DNA sequence from clone RP23-215H18 on ch... 42 1.9
15gb|AC114666.31| Mus musculus chromosome 5, clone RP24-175N6, com... 40 7.6
16gb|AC165975.4| Mus musculus BAC clone RP23-3L23 from chromosome ... 40 7.6
17gb|AC136843.6| Oryza sativa (japonica cultivar-group) chromosome... 40 7.6
18gb|AC135398.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.6
19gb|AC115361.5| Mus musculus BAC clone RP24-76P12 from chromosome... 40 7.6
20emb|AL606748.9| Human DNA sequence from clone RP13-43E11 on chro... 40 7.6
21emb|AL391726.8| Human DNA sequence from clone RP11-86O4 on chrom... 40 7.6
22emb|AL136228.8| Human DNA sequence from clone RP1-66H9 on chromo... 40 7.6
23emb|BX294143.1| Pirellula sp. strain 1 complete genome; segment ... 40 7.6
24dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
25gb|AY943953.1| Streptomyces sp. FQ1 plasmid pFP1, complete sequence 40 7.6
26gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.6
27gb|AC142414.3| Mus musculus BAC clone RP23-372N15 from 8, comple... 40 7.6

>ref|XM_463918.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2037

 Score =  103 bits (52), Expect = 6e-19
 Identities = 158/195 (81%), Gaps = 9/195 (4%)
 Strand = Plus / Minus

                                                                        
Query: 375  ggagaagcactctctgttgagctcctcccactcactcccgatcagcgcccgcatgtgccc 434
            |||||||||||| | |||||||||||||||||| | | ||||||||  ||||| |||| |
Sbjct: 1684 ggagaagcactcccggttgagctcctcccactcgcccgcgatcagccgccgcacgtgctc 1625

                                                                        
Query: 435  ctccgcgttgccaccgg---------ggttctcttttaggtacaactccttgtatgatcc 485
            |||||| | |||| |||         ||||||| || ||||| | ||||||||| |||||
Sbjct: 1624 ctccgcctcgccagcggcgagccccgggttctccttgaggtatagctccttgtacgatcc 1565

                                                                        
Query: 486  gtccaggccatcttgcgcttcgtccttggcactgcccatgtcatcccaaagtctcaagat 545
            |||||  || ||||| || || |||||||||||||||| ||||||||| |||||||||||
Sbjct: 1564 gtccaatccttcttgtgcctcatccttggcactgcccaggtcatcccagagtctcaagat 1505

                           
Query: 546  ntttgacgggcagga 560
             ||||  ||||||||
Sbjct: 1504 ttttgctgggcagga 1490



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>dbj|AK110925.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-D07, full
            insert sequence
          Length = 2037

 Score =  103 bits (52), Expect = 6e-19
 Identities = 158/195 (81%), Gaps = 9/195 (4%)
 Strand = Plus / Minus

                                                                        
Query: 375  ggagaagcactctctgttgagctcctcccactcactcccgatcagcgcccgcatgtgccc 434
            |||||||||||| | |||||||||||||||||| | | ||||||||  ||||| |||| |
Sbjct: 1684 ggagaagcactcccggttgagctcctcccactcgcccgcgatcagccgccgcacgtgctc 1625

                                                                        
Query: 435  ctccgcgttgccaccgg---------ggttctcttttaggtacaactccttgtatgatcc 485
            |||||| | |||| |||         ||||||| || ||||| | ||||||||| |||||
Sbjct: 1624 ctccgcctcgccagcggcgagccccgggttctccttgaggtatagctccttgtacgatcc 1565

                                                                        
Query: 486  gtccaggccatcttgcgcttcgtccttggcactgcccatgtcatcccaaagtctcaagat 545
            |||||  || ||||| || || |||||||||||||||| ||||||||| |||||||||||
Sbjct: 1564 gtccaatccttcttgtgcctcatccttggcactgcccaggtcatcccagagtctcaagat 1505

                           
Query: 546  ntttgacgggcagga 560
             ||||  ||||||||
Sbjct: 1504 ttttgctgggcagga 1490



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                   
Query: 509     ccttggcactgcccatgtcatcccaaagtctcaagatntttgacgggcagga 560
               ||||||||||||||| ||||||||| ||||||||||| ||||  ||||||||
Sbjct: 1150093 ccttggcactgcccaggtcatcccagagtctcaagatttttgctgggcagga 1150042



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 57/66 (86%)
 Strand = Plus / Minus

                                                                           
Query: 375     ggagaagcactctctgttgagctcctcccactcactcccgatcagcgcccgcatgtgccc 434
               |||||||||||| | |||||||||||||||||| | | ||||||||  ||||| |||| |
Sbjct: 1150699 ggagaagcactcccggttgagctcctcccactcgcccgcgatcagccgccgcacgtgctc 1150640

                     
Query: 435     ctccgc 440
               ||||||
Sbjct: 1150639 ctccgc 1150634



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>dbj|AP004078.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1020_C02
          Length = 124578

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                  
Query: 509    ccttggcactgcccatgtcatcccaaagtctcaagatntttgacgggcagga 560
              ||||||||||||||| ||||||||| ||||||||||| ||||  ||||||||
Sbjct: 102617 ccttggcactgcccaggtcatcccagagtctcaagatttttgctgggcagga 102566



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 57/66 (86%)
 Strand = Plus / Minus

                                                                          
Query: 375    ggagaagcactctctgttgagctcctcccactcactcccgatcagcgcccgcatgtgccc 434
              |||||||||||| | |||||||||||||||||| | | ||||||||  ||||| |||| |
Sbjct: 103223 ggagaagcactcccggttgagctcctcccactcgcccgcgatcagccgccgcacgtgctc 103164

                    
Query: 435    ctccgc 440
              ||||||
Sbjct: 103163 ctccgc 103158



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>gb|AY928082.1| Zea mays cultivar B73 terpene synthase 3 (TPS3) mRNA, complete cds
          Length = 1725

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                    
Query: 377  agaagcactctctgttgagctcctcccactcactcccgatcagcgcccgcatgtgc 432
            |||||||||| |||||||||||| ||||||| ||| |||||||  | |||||||||
Sbjct: 1588 agaagcactccctgttgagctccacccactccctcgcgatcaggccgcgcatgtgc 1533



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>ref|NM_197111.1| Oryza sativa (japonica cultivar-group) putative monoterpene synthase
            (OSJNBb0049A16.6), mRNA
          Length = 1407

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 463  aggtacaactccttgtatgatccgtcca 490
            ||||||||||||||||||||||| ||||
Sbjct: 1175 aggtacaactccttgtatgatccatcca 1148



 Score = 44.1 bits (22), Expect = 0.49
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                 
Query: 508  tccttggcactgcccatgtcatcccaaagtctcaagatntttgacgggcagga 560
            ||||||||  |||| ||||||||||| ||||| ||||| ||||  ||||||||
Sbjct: 1142 tccttggcgttgcctatgtcatcccagagtctgaagatttttgctgggcagga 1090



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>gb|AC146481.2| Oryza sativa chromosome 10  B1288B10 genomic sequence, complete
             sequence
          Length = 58734

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 463   aggtacaactccttgtatgatccgtcca 490
             ||||||||||||||||||||||| ||||
Sbjct: 29890 aggtacaactccttgtatgatccatcca 29917



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                 
Query: 509   ccttggcactgcccatgtcatcccaaagtctcaagatntttgacgggcagga 560
             |||||||  |||| ||||||||||| ||||| ||||| ||||  ||||||||
Sbjct: 30209 ccttggcgttgcctatgtcatcccagagtctgaagatttttgctgggcagga 30260



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>gb|AC090120.8| Oryza sativa chromosome 10 BAC OSJNBb0049A16 genomic sequence,
            complete sequence
          Length = 129585

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 463  aggtacaactccttgtatgatccgtcca 490
            ||||||||||||||||||||||| ||||
Sbjct: 3276 aggtacaactccttgtatgatccatcca 3249



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                
Query: 509  ccttggcactgcccatgtcatcccaaagtctcaagatntttgacgggcagga 560
            |||||||  |||| ||||||||||| ||||| ||||| ||||  ||||||||
Sbjct: 2957 ccttggcgttgcctatgtcatcccagagtctgaagatttttgctgggcagga 2906



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                            
Query: 463      aggtacaactccttgtatgatccgtcca 490
                ||||||||||||||||||||||| ||||
Sbjct: 18057757 aggtacaactccttgtatgatccatcca 18057784



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                    
Query: 509      ccttggcactgcccatgtcatcccaaagtctcaagatntttgacgggcagga 560
                |||||||  |||| ||||||||||| ||||| ||||| ||||  ||||||||
Sbjct: 18058076 ccttggcgttgcctatgtcatcccagagtctgaagatttttgctgggcagga 18058127



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                            
Query: 463      aggtacaactccttgtatgatccgtcca 490
                ||||||||||||||||||||||| ||||
Sbjct: 18067010 aggtacaactccttgtatgatccatcca 18067037



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                    
Query: 509      ccttggcactgcccatgtcatcccaaagtctcaagatntttgacgggcagga 560
                |||||||  |||| ||||||||||| ||||| ||||| ||||  ||||||||
Sbjct: 18067329 ccttggcgttgcctatgtcatcccagagtctgaagatttttgctgggcagga 18067380



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>gb|AC147095.2| Pan troglodytes BAC clone RP43-51E22 from 7, complete sequence
          Length = 152510

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 194   tttgctctggttctgtcatcctctag 219
             |||||||| |||||||||||||||||
Sbjct: 45525 tttgctctagttctgtcatcctctag 45550



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>gb|AC073109.2| Homo sapiens BAC clone RP11-502P9 from 7, complete sequence
          Length = 158340

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 194    tttgctctggttctgtcatcctctag 219
              |||||||| |||||||||||||||||
Sbjct: 132530 tttgctctagttctgtcatcctctag 132555



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>gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta H, complete genome
          Length = 1751377

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 257     tccttatgtactcctcaaggac 278
               ||||||||||||||||||||||
Sbjct: 1106500 tccttatgtactcctcaaggac 1106479



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>emb|AL596025.22| Mouse DNA sequence from clone RP23-215H18 on chromosome 11 Contains a
              novel gene and the 3' end of a gene that is a possible
              ortholog of human dynein axonemal heavy polypeptide 9
              (DNAH9), complete sequence
          Length = 190066

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 183    aaaaccccagctttgctctgg 203
              |||||||||||||||||||||
Sbjct: 113516 aaaaccccagctttgctctgg 113536



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>gb|AC114666.31| Mus musculus chromosome 5, clone RP24-175N6, complete sequence
          Length = 193158

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 204  ttctgtcatcctctagattc 223
            ||||||||||||||||||||
Sbjct: 2826 ttctgtcatcctctagattc 2807



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>gb|AC165975.4| Mus musculus BAC clone RP23-3L23 from chromosome 5, complete sequence
          Length = 259091

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 204    ttctgtcatcctctagattc 223
              ||||||||||||||||||||
Sbjct: 186163 ttctgtcatcctctagattc 186144



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>gb|AC136843.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0094M06, complete sequence
          Length = 135583

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 105   tagtcaatgttagaaaagtttgac 128
             |||||||||||| |||||||||||
Sbjct: 55862 tagtcaatgttataaaagtttgac 55885



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>gb|AC135398.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0079N13,
              complete sequence
          Length = 140946

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 105    tagtcaatgttagaaaagtttgac 128
              |||||||||||| |||||||||||
Sbjct: 134958 tagtcaatgttataaaagtttgac 134981



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>gb|AC115361.5| Mus musculus BAC clone RP24-76P12 from chromosome 8, complete
            sequence
          Length = 235095

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 237  catgattcataacaggagca 256
            ||||||||||||||||||||
Sbjct: 9012 catgattcataacaggagca 9031



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>emb|AL606748.9| Human DNA sequence from clone RP13-43E11 on chromosome Xp21.1-21.3
             Contains the 5' end of the SRPX gene for a chromosome X
             sushi-repeat-containing protein, a novel gene, the RPGR
             gene for retinitis pigmentosa GTPase regulator, the 5' end
             of the OTC gene for ornithine carbamoyltransferase and two
             CpG islands, complete sequence
          Length = 141577

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 180   gggaaaaccccagctttgct 199
             ||||||||||||||||||||
Sbjct: 37331 gggaaaaccccagctttgct 37350



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>emb|AL391726.8| Human DNA sequence from clone RP11-86O4 on chromosome 6 Contains part
             of the gene for androgen induced protein (AIG-1) (CGI-103)
             (includes FLJ10485), complete sequence
          Length = 121029

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    aaatttccacttcaccacta 89
             ||||||||||||||||||||
Sbjct: 26054 aaatttccacttcaccacta 26035



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>emb|AL136228.8| Human DNA sequence from clone RP1-66H9 on chromosome 6 Contains two CpG
             islands, complete sequence
          Length = 92460

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 188   cccagctttgctctggttct 207
             ||||||||||||||||||||
Sbjct: 51981 cccagctttgctctggttct 52000



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>emb|BX294143.1| Pirellula sp. strain 1 complete genome; segment 11/24
          Length = 303250

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 410    tcccgatcagcgcccgcatgtgcc 433
              ||||||||||||||||||| ||||
Sbjct: 226494 tcccgatcagcgcccgcatttgcc 226517



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 105      tagtcaatgttagaaaagtttgac 128
                |||||||||||| |||||||||||
Sbjct: 15883264 tagtcaatgttataaaagtttgac 15883287



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>gb|AY943953.1| Streptomyces sp. FQ1 plasmid pFP1, complete sequence
          Length = 39360

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 363  gaaggcccgcctggagaagc 382
            ||||||||||||||||||||
Sbjct: 3569 gaaggcccgcctggagaagc 3588



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 105      tagtcaatgttagaaaagtttgac 128
                |||||||||||| |||||||||||
Sbjct: 15970640 tagtcaatgttataaaagtttgac 15970663



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>gb|AC142414.3| Mus musculus BAC clone RP23-372N15 from 8, complete sequence
          Length = 192261

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 237    catgattcataacaggagca 256
              ||||||||||||||||||||
Sbjct: 116891 catgattcataacaggagca 116872


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,627,158
Number of Sequences: 3902068
Number of extensions: 3627158
Number of successful extensions: 70391
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70237
Number of HSP's gapped (non-prelim): 154
length of query: 560
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 537
effective length of database: 17,143,297,704
effective search space: 9205950867048
effective search space used: 9205950867048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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