| Clone Name | rbags37i03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_463918.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2037 Score = 103 bits (52), Expect = 6e-19 Identities = 158/195 (81%), Gaps = 9/195 (4%) Strand = Plus / Minus Query: 375 ggagaagcactctctgttgagctcctcccactcactcccgatcagcgcccgcatgtgccc 434 |||||||||||| | |||||||||||||||||| | | |||||||| ||||| |||| | Sbjct: 1684 ggagaagcactcccggttgagctcctcccactcgcccgcgatcagccgccgcacgtgctc 1625 Query: 435 ctccgcgttgccaccgg---------ggttctcttttaggtacaactccttgtatgatcc 485 |||||| | |||| ||| ||||||| || ||||| | ||||||||| ||||| Sbjct: 1624 ctccgcctcgccagcggcgagccccgggttctccttgaggtatagctccttgtacgatcc 1565 Query: 486 gtccaggccatcttgcgcttcgtccttggcactgcccatgtcatcccaaagtctcaagat 545 ||||| || ||||| || || |||||||||||||||| ||||||||| ||||||||||| Sbjct: 1564 gtccaatccttcttgtgcctcatccttggcactgcccaggtcatcccagagtctcaagat 1505 Query: 546 ntttgacgggcagga 560 |||| |||||||| Sbjct: 1504 ttttgctgggcagga 1490
>dbj|AK110925.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-D07, full insert sequence Length = 2037 Score = 103 bits (52), Expect = 6e-19 Identities = 158/195 (81%), Gaps = 9/195 (4%) Strand = Plus / Minus Query: 375 ggagaagcactctctgttgagctcctcccactcactcccgatcagcgcccgcatgtgccc 434 |||||||||||| | |||||||||||||||||| | | |||||||| ||||| |||| | Sbjct: 1684 ggagaagcactcccggttgagctcctcccactcgcccgcgatcagccgccgcacgtgctc 1625 Query: 435 ctccgcgttgccaccgg---------ggttctcttttaggtacaactccttgtatgatcc 485 |||||| | |||| ||| ||||||| || ||||| | ||||||||| ||||| Sbjct: 1624 ctccgcctcgccagcggcgagccccgggttctccttgaggtatagctccttgtacgatcc 1565 Query: 486 gtccaggccatcttgcgcttcgtccttggcactgcccatgtcatcccaaagtctcaagat 545 ||||| || ||||| || || |||||||||||||||| ||||||||| ||||||||||| Sbjct: 1564 gtccaatccttcttgtgcctcatccttggcactgcccaggtcatcccagagtctcaagat 1505 Query: 546 ntttgacgggcagga 560 |||| |||||||| Sbjct: 1504 ttttgctgggcagga 1490
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 65.9 bits (33), Expect = 1e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 509 ccttggcactgcccatgtcatcccaaagtctcaagatntttgacgggcagga 560 ||||||||||||||| ||||||||| ||||||||||| |||| |||||||| Sbjct: 1150093 ccttggcactgcccaggtcatcccagagtctcaagatttttgctgggcagga 1150042 Score = 60.0 bits (30), Expect = 8e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 375 ggagaagcactctctgttgagctcctcccactcactcccgatcagcgcccgcatgtgccc 434 |||||||||||| | |||||||||||||||||| | | |||||||| ||||| |||| | Sbjct: 1150699 ggagaagcactcccggttgagctcctcccactcgcccgcgatcagccgccgcacgtgctc 1150640 Query: 435 ctccgc 440 |||||| Sbjct: 1150639 ctccgc 1150634
>dbj|AP004078.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1020_C02 Length = 124578 Score = 65.9 bits (33), Expect = 1e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 509 ccttggcactgcccatgtcatcccaaagtctcaagatntttgacgggcagga 560 ||||||||||||||| ||||||||| ||||||||||| |||| |||||||| Sbjct: 102617 ccttggcactgcccaggtcatcccagagtctcaagatttttgctgggcagga 102566 Score = 60.0 bits (30), Expect = 8e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 375 ggagaagcactctctgttgagctcctcccactcactcccgatcagcgcccgcatgtgccc 434 |||||||||||| | |||||||||||||||||| | | |||||||| ||||| |||| | Sbjct: 103223 ggagaagcactcccggttgagctcctcccactcgcccgcgatcagccgccgcacgtgctc 103164 Query: 435 ctccgc 440 |||||| Sbjct: 103163 ctccgc 103158
>gb|AY928082.1| Zea mays cultivar B73 terpene synthase 3 (TPS3) mRNA, complete cds Length = 1725 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 377 agaagcactctctgttgagctcctcccactcactcccgatcagcgcccgcatgtgc 432 |||||||||| |||||||||||| ||||||| ||| ||||||| | ||||||||| Sbjct: 1588 agaagcactccctgttgagctccacccactccctcgcgatcaggccgcgcatgtgc 1533
>ref|NM_197111.1| Oryza sativa (japonica cultivar-group) putative monoterpene synthase (OSJNBb0049A16.6), mRNA Length = 1407 Score = 48.1 bits (24), Expect = 0.031 Identities = 27/28 (96%) Strand = Plus / Minus Query: 463 aggtacaactccttgtatgatccgtcca 490 ||||||||||||||||||||||| |||| Sbjct: 1175 aggtacaactccttgtatgatccatcca 1148 Score = 44.1 bits (22), Expect = 0.49 Identities = 45/53 (84%) Strand = Plus / Minus Query: 508 tccttggcactgcccatgtcatcccaaagtctcaagatntttgacgggcagga 560 |||||||| |||| ||||||||||| ||||| ||||| |||| |||||||| Sbjct: 1142 tccttggcgttgcctatgtcatcccagagtctgaagatttttgctgggcagga 1090
>gb|AC146481.2| Oryza sativa chromosome 10 B1288B10 genomic sequence, complete sequence Length = 58734 Score = 48.1 bits (24), Expect = 0.031 Identities = 27/28 (96%) Strand = Plus / Plus Query: 463 aggtacaactccttgtatgatccgtcca 490 ||||||||||||||||||||||| |||| Sbjct: 29890 aggtacaactccttgtatgatccatcca 29917 Score = 42.1 bits (21), Expect = 1.9 Identities = 44/52 (84%) Strand = Plus / Plus Query: 509 ccttggcactgcccatgtcatcccaaagtctcaagatntttgacgggcagga 560 ||||||| |||| ||||||||||| ||||| ||||| |||| |||||||| Sbjct: 30209 ccttggcgttgcctatgtcatcccagagtctgaagatttttgctgggcagga 30260
>gb|AC090120.8| Oryza sativa chromosome 10 BAC OSJNBb0049A16 genomic sequence, complete sequence Length = 129585 Score = 48.1 bits (24), Expect = 0.031 Identities = 27/28 (96%) Strand = Plus / Minus Query: 463 aggtacaactccttgtatgatccgtcca 490 ||||||||||||||||||||||| |||| Sbjct: 3276 aggtacaactccttgtatgatccatcca 3249 Score = 42.1 bits (21), Expect = 1.9 Identities = 44/52 (84%) Strand = Plus / Minus Query: 509 ccttggcactgcccatgtcatcccaaagtctcaagatntttgacgggcagga 560 ||||||| |||| ||||||||||| ||||| ||||| |||| |||||||| Sbjct: 2957 ccttggcgttgcctatgtcatcccagagtctgaagatttttgctgggcagga 2906
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 48.1 bits (24), Expect = 0.031 Identities = 27/28 (96%) Strand = Plus / Plus Query: 463 aggtacaactccttgtatgatccgtcca 490 ||||||||||||||||||||||| |||| Sbjct: 18057757 aggtacaactccttgtatgatccatcca 18057784 Score = 42.1 bits (21), Expect = 1.9 Identities = 44/52 (84%) Strand = Plus / Plus Query: 509 ccttggcactgcccatgtcatcccaaagtctcaagatntttgacgggcagga 560 ||||||| |||| ||||||||||| ||||| ||||| |||| |||||||| Sbjct: 18058076 ccttggcgttgcctatgtcatcccagagtctgaagatttttgctgggcagga 18058127
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 48.1 bits (24), Expect = 0.031 Identities = 27/28 (96%) Strand = Plus / Plus Query: 463 aggtacaactccttgtatgatccgtcca 490 ||||||||||||||||||||||| |||| Sbjct: 18067010 aggtacaactccttgtatgatccatcca 18067037 Score = 42.1 bits (21), Expect = 1.9 Identities = 44/52 (84%) Strand = Plus / Plus Query: 509 ccttggcactgcccatgtcatcccaaagtctcaagatntttgacgggcagga 560 ||||||| |||| ||||||||||| ||||| ||||| |||| |||||||| Sbjct: 18067329 ccttggcgttgcctatgtcatcccagagtctgaagatttttgctgggcagga 18067380
>gb|AC147095.2| Pan troglodytes BAC clone RP43-51E22 from 7, complete sequence Length = 152510 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Plus Query: 194 tttgctctggttctgtcatcctctag 219 |||||||| ||||||||||||||||| Sbjct: 45525 tttgctctagttctgtcatcctctag 45550
>gb|AC073109.2| Homo sapiens BAC clone RP11-502P9 from 7, complete sequence Length = 158340 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Plus Query: 194 tttgctctggttctgtcatcctctag 219 |||||||| ||||||||||||||||| Sbjct: 132530 tttgctctagttctgtcatcctctag 132555
>gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta H, complete genome Length = 1751377 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 257 tccttatgtactcctcaaggac 278 |||||||||||||||||||||| Sbjct: 1106500 tccttatgtactcctcaaggac 1106479
>emb|AL596025.22| Mouse DNA sequence from clone RP23-215H18 on chromosome 11 Contains a novel gene and the 3' end of a gene that is a possible ortholog of human dynein axonemal heavy polypeptide 9 (DNAH9), complete sequence Length = 190066 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 183 aaaaccccagctttgctctgg 203 ||||||||||||||||||||| Sbjct: 113516 aaaaccccagctttgctctgg 113536
>gb|AC114666.31| Mus musculus chromosome 5, clone RP24-175N6, complete sequence Length = 193158 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 ttctgtcatcctctagattc 223 |||||||||||||||||||| Sbjct: 2826 ttctgtcatcctctagattc 2807
>gb|AC165975.4| Mus musculus BAC clone RP23-3L23 from chromosome 5, complete sequence Length = 259091 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 ttctgtcatcctctagattc 223 |||||||||||||||||||| Sbjct: 186163 ttctgtcatcctctagattc 186144
>gb|AC136843.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0094M06, complete sequence Length = 135583 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 105 tagtcaatgttagaaaagtttgac 128 |||||||||||| ||||||||||| Sbjct: 55862 tagtcaatgttataaaagtttgac 55885
>gb|AC135398.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0079N13, complete sequence Length = 140946 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 105 tagtcaatgttagaaaagtttgac 128 |||||||||||| ||||||||||| Sbjct: 134958 tagtcaatgttataaaagtttgac 134981
>gb|AC115361.5| Mus musculus BAC clone RP24-76P12 from chromosome 8, complete sequence Length = 235095 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 catgattcataacaggagca 256 |||||||||||||||||||| Sbjct: 9012 catgattcataacaggagca 9031
>emb|AL606748.9| Human DNA sequence from clone RP13-43E11 on chromosome Xp21.1-21.3 Contains the 5' end of the SRPX gene for a chromosome X sushi-repeat-containing protein, a novel gene, the RPGR gene for retinitis pigmentosa GTPase regulator, the 5' end of the OTC gene for ornithine carbamoyltransferase and two CpG islands, complete sequence Length = 141577 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 gggaaaaccccagctttgct 199 |||||||||||||||||||| Sbjct: 37331 gggaaaaccccagctttgct 37350
>emb|AL391726.8| Human DNA sequence from clone RP11-86O4 on chromosome 6 Contains part of the gene for androgen induced protein (AIG-1) (CGI-103) (includes FLJ10485), complete sequence Length = 121029 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 aaatttccacttcaccacta 89 |||||||||||||||||||| Sbjct: 26054 aaatttccacttcaccacta 26035
>emb|AL136228.8| Human DNA sequence from clone RP1-66H9 on chromosome 6 Contains two CpG islands, complete sequence Length = 92460 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 cccagctttgctctggttct 207 |||||||||||||||||||| Sbjct: 51981 cccagctttgctctggttct 52000
>emb|BX294143.1| Pirellula sp. strain 1 complete genome; segment 11/24 Length = 303250 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 410 tcccgatcagcgcccgcatgtgcc 433 ||||||||||||||||||| |||| Sbjct: 226494 tcccgatcagcgcccgcatttgcc 226517
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 105 tagtcaatgttagaaaagtttgac 128 |||||||||||| ||||||||||| Sbjct: 15883264 tagtcaatgttataaaagtttgac 15883287
>gb|AY943953.1| Streptomyces sp. FQ1 plasmid pFP1, complete sequence Length = 39360 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 363 gaaggcccgcctggagaagc 382 |||||||||||||||||||| Sbjct: 3569 gaaggcccgcctggagaagc 3588
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 105 tagtcaatgttagaaaagtttgac 128 |||||||||||| ||||||||||| Sbjct: 15970640 tagtcaatgttataaaagtttgac 15970663
>gb|AC142414.3| Mus musculus BAC clone RP23-372N15 from 8, complete sequence Length = 192261 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 catgattcataacaggagca 256 |||||||||||||||||||| Sbjct: 116891 catgattcataacaggagca 116872 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,627,158 Number of Sequences: 3902068 Number of extensions: 3627158 Number of successful extensions: 70391 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70237 Number of HSP's gapped (non-prelim): 154 length of query: 560 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 537 effective length of database: 17,143,297,704 effective search space: 9205950867048 effective search space used: 9205950867048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)