ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags37h22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_479398.1| Oryza sativa (japonica cultivar-group), mRNA 204 2e-49
2ref|XM_506533.1| PREDICTED Oryza sativa (japonica cultivar-group... 204 2e-49
3dbj|AK104043.1| Oryza sativa (japonica cultivar-group) cDNA clon... 204 2e-49
4dbj|AK100911.1| Oryza sativa (japonica cultivar-group) cDNA clon... 204 2e-49
5dbj|AK100264.1| Oryza sativa (japonica cultivar-group) cDNA clon... 204 2e-49
6dbj|AK072927.1| Oryza sativa (japonica cultivar-group) cDNA clon... 204 2e-49
7dbj|AB042102.1| Oryza sativa SEC31 mRNA, complete cds 204 2e-49
8gb|AY596611.1| Saccharum officinarum clone SCCCCL4015D05, comple... 165 2e-37
9dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 153 8e-34
10dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic D... 153 8e-34
11emb|AL935181.5| Zebrafish DNA sequence from clone CH211-162K9, c... 46 0.13
12gb|AC113312.7| Mus musculus chromosome 7, clone RP23-440K7, comp... 44 0.52
13dbj|AK133737.1| Mus musculus 8 days embryo whole body cDNA, RIKE... 44 0.52
14dbj|AK163265.1| Mus musculus 2 cells egg cDNA, RIKEN full-length... 44 0.52
15dbj|AK158571.1| Mus musculus visual cortex cDNA, RIKEN full-leng... 44 0.52
16dbj|AK029831.1| Mus musculus adult male testis cDNA, RIKEN full-... 44 0.52
17dbj|AK018351.1| Mus musculus 12 days embryo female ovary cDNA, R... 44 0.52
18gb|AC122017.5| Mus musculus BAC clone RP24-361J4 from 7, complet... 44 0.52
19emb|CR548612.1| Paramecium tetraurelia macronuclear largest chro... 42 2.0
20gb|AC173452.3| Papio anubis clone RP41-379N3, complete sequence 42 2.0
21gb|AC159930.3| Papio anubis clone RP41-174M1, complete sequence 42 2.0
22gb|AC171175.1| Mus musculus chromosome 19, clone wi1-1715L8, com... 40 8.1
23gb|AC152065.4| Mus musculus BAC clone RP23-16D9 from chromosome ... 40 8.1
24ref|XM_609134.2| PREDICTED: Bos taurus similar to Inner nuclear ... 40 8.1
25gb|AC092129.3| Homo sapiens chromosome 16 clone RP11-140O8, comp... 40 8.1
26ref|XM_721292.1| Plasmodium yoelii yoelii str. 17XNL mechanosens... 40 8.1
27ref|XM_739742.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 8.1
28gb|AC140103.7| Medicago truncatula clone mth2-9i16, complete seq... 40 8.1
29gb|AE016828.2| Coxiella burnetii RSA 493, complete genome 40 8.1
30emb|AL606668.2|OSJN00083 Oryza sativa genomic DNA, chromosome 4,... 40 8.1
31emb|AL590146.2| Zebrafish DNA sequence from clone RP71-20I5 in l... 40 8.1
32emb|CR936324.2| Medicago truncatula chromosome 5 clone mth2-62a2... 40 8.1
33gb|AC117589.13| Mus musculus chromosome 18, clone RP23-222A8, co... 40 8.1
34emb|BX510315.6| Zebrafish DNA sequence from clone CH211-59I18 in... 40 8.1
35gb|AC162161.9| Medicago truncatula clone mth2-2g22, complete seq... 40 8.1
36gb|AC114497.1| Homo sapiens chromosome 1 clone RP11-568G23, comp... 40 8.1
37dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
38gb|AC132623.4| Mus musculus BAC clone RP23-123N23 from chromosom... 40 8.1
39gb|AC121253.3| Homo sapiens chromosome 3 clone RP11-208G16, comp... 40 8.1
40gb|AE001439.1| Helicobacter pylori J99, complete genome 40 8.1
41emb|AL110479.1|CEY105C5B Caenorhabditis elegans YAC Y105C5B, com... 40 8.1
42gb|AC109616.9| Mus musculus chromosome 19, clone RP23-449C1, com... 40 8.1
43emb|AL928830.10| Zebrafish DNA sequence from clone CH211-119E16,... 40 8.1
44gb|AC149598.2| Mus musculus BAC clone RP24-119N9 from 18, comple... 40 8.1 
>ref|XM_479398.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3881

 Score =  204 bits (103), Expect = 2e-49
 Identities = 211/247 (85%)
 Strand = Plus / Minus

                                                                        
Query: 346  tttacactctgaagctttgccttgtcttgatcatgcgcttcaatgatgagagccaaaagt 405
            |||||| ||||||  | ||||| ||||||||||| ||||||||||  |  ||||| ||||
Sbjct: 3465 tttacattctgaaattctgcctcgtcttgatcatacgcttcaatgcggcaagccagaagt 3406

                                                                        
Query: 406  tgcactcgtcccaatcactggtcgtcagaagaatctgaagttgcatcgcggtggcaaaat 465
            ||||||||||||| || || || |||||||| | |||||| |||||||| ||||||||||
Sbjct: 3405 tgcactcgtcccagtcgctcgttgtcagaagtacctgaaggtgcatcgcagtggcaaaat 3346

                                                                        
Query: 466  cactactatcaagtgcactgcacatctgaatgagttttgatgaaacatttggagatatat 525
            |||  ||||||||||||||||| | ||||||||||||||||||||| |||||||||||||
Sbjct: 3345 caccgctatcaagtgcactgcaaagctgaatgagttttgatgaaacgtttggagatatat 3286

                                                                        
Query: 526  ctccagtgttgagtttcgcaaataacgccccaatcttctttgagttgtcttcaatttcac 585
            | ||||  |||||||| |||||||  |  || |||||  ||||||||||||| |||||||
Sbjct: 3285 ccccagaattgagttttgcaaatagtgttccgatctttcttgagttgtcttcgatttcac 3226

                   
Query: 586  gtttttt 592
            |||||||
Sbjct: 3225 gtttttt 3219



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 308  gtgtatacagaactagctgc 327
            ||||||||||||||||||||
Sbjct: 3500 gtgtatacagaactagctgc 3481
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>ref|XM_506533.1| PREDICTED Oryza sativa (japonica cultivar-group), P0047B07.120 mRNA
          Length = 3906

 Score =  204 bits (103), Expect = 2e-49
 Identities = 211/247 (85%)
 Strand = Plus / Minus

                                                                        
Query: 346  tttacactctgaagctttgccttgtcttgatcatgcgcttcaatgatgagagccaaaagt 405
            |||||| ||||||  | ||||| ||||||||||| ||||||||||  |  ||||| ||||
Sbjct: 3527 tttacattctgaaattctgcctcgtcttgatcatacgcttcaatgcggcaagccagaagt 3468

                                                                        
Query: 406  tgcactcgtcccaatcactggtcgtcagaagaatctgaagttgcatcgcggtggcaaaat 465
            ||||||||||||| || || || |||||||| | |||||| |||||||| ||||||||||
Sbjct: 3467 tgcactcgtcccagtcgctcgttgtcagaagtacctgaaggtgcatcgcagtggcaaaat 3408

                                                                        
Query: 466  cactactatcaagtgcactgcacatctgaatgagttttgatgaaacatttggagatatat 525
            |||  ||||||||||||||||| | ||||||||||||||||||||| |||||||||||||
Sbjct: 3407 caccgctatcaagtgcactgcaaagctgaatgagttttgatgaaacgtttggagatatat 3348

                                                                        
Query: 526  ctccagtgttgagtttcgcaaataacgccccaatcttctttgagttgtcttcaatttcac 585
            | ||||  |||||||| |||||||  |  || |||||  ||||||||||||| |||||||
Sbjct: 3347 ccccagaattgagttttgcaaatagtgttccgatctttcttgagttgtcttcgatttcac 3288

                   
Query: 586  gtttttt 592
            |||||||
Sbjct: 3287 gtttttt 3281



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 308  gtgtatacagaactagctgc 327
            ||||||||||||||||||||
Sbjct: 3562 gtgtatacagaactagctgc 3543
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>dbj|AK104043.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-C10, full
            insert sequence
          Length = 2030

 Score =  204 bits (103), Expect = 2e-49
 Identities = 211/247 (85%)
 Strand = Plus / Minus

                                                                        
Query: 346  tttacactctgaagctttgccttgtcttgatcatgcgcttcaatgatgagagccaaaagt 405
            |||||| ||||||  | ||||| ||||||||||| ||||||||||  |  ||||| ||||
Sbjct: 1651 tttacattctgaaattctgcctcgtcttgatcatacgcttcaatgcggcaagccagaagt 1592

                                                                        
Query: 406  tgcactcgtcccaatcactggtcgtcagaagaatctgaagttgcatcgcggtggcaaaat 465
            ||||||||||||| || || || |||||||| | |||||| |||||||| ||||||||||
Sbjct: 1591 tgcactcgtcccagtcgctcgttgtcagaagtacctgaaggtgcatcgcagtggcaaaat 1532

                                                                        
Query: 466  cactactatcaagtgcactgcacatctgaatgagttttgatgaaacatttggagatatat 525
            |||  ||||||||||||||||| | ||||||||||||||||||||| |||||||||||||
Sbjct: 1531 caccgctatcaagtgcactgcaaagctgaatgagttttgatgaaacgtttggagatatat 1472

                                                                        
Query: 526  ctccagtgttgagtttcgcaaataacgccccaatcttctttgagttgtcttcaatttcac 585
            | ||||  |||||||| |||||||  |  || |||||  ||||||||||||| |||||||
Sbjct: 1471 ccccagaattgagttttgcaaatagtgttccgatctttcttgagttgtcttcgatttcac 1412

                   
Query: 586  gtttttt 592
            |||||||
Sbjct: 1411 gtttttt 1405



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 308  gtgtatacagaactagctgc 327
            ||||||||||||||||||||
Sbjct: 1686 gtgtatacagaactagctgc 1667
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>dbj|AK100911.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132O04, full
            insert sequence
          Length = 3881

 Score =  204 bits (103), Expect = 2e-49
 Identities = 211/247 (85%)
 Strand = Plus / Minus

                                                                        
Query: 346  tttacactctgaagctttgccttgtcttgatcatgcgcttcaatgatgagagccaaaagt 405
            |||||| ||||||  | ||||| ||||||||||| ||||||||||  |  ||||| ||||
Sbjct: 3465 tttacattctgaaattctgcctcgtcttgatcatacgcttcaatgcggcaagccagaagt 3406

                                                                        
Query: 406  tgcactcgtcccaatcactggtcgtcagaagaatctgaagttgcatcgcggtggcaaaat 465
            ||||||||||||| || || || |||||||| | |||||| |||||||| ||||||||||
Sbjct: 3405 tgcactcgtcccagtcgctcgttgtcagaagtacctgaaggtgcatcgcagtggcaaaat 3346

                                                                        
Query: 466  cactactatcaagtgcactgcacatctgaatgagttttgatgaaacatttggagatatat 525
            |||  ||||||||||||||||| | ||||||||||||||||||||| |||||||||||||
Sbjct: 3345 caccgctatcaagtgcactgcaaagctgaatgagttttgatgaaacgtttggagatatat 3286

                                                                        
Query: 526  ctccagtgttgagtttcgcaaataacgccccaatcttctttgagttgtcttcaatttcac 585
            | ||||  |||||||| |||||||  |  || |||||  ||||||||||||| |||||||
Sbjct: 3285 ccccagaattgagttttgcaaatagtgttccgatctttcttgagttgtcttcgatttcac 3226

                   
Query: 586  gtttttt 592
            |||||||
Sbjct: 3225 gtttttt 3219



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 308  gtgtatacagaactagctgc 327
            ||||||||||||||||||||
Sbjct: 3500 gtgtatacagaactagctgc 3481
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>dbj|AK100264.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064J03, full
            insert sequence
          Length = 2226

 Score =  204 bits (103), Expect = 2e-49
 Identities = 211/247 (85%)
 Strand = Plus / Minus

                                                                        
Query: 346  tttacactctgaagctttgccttgtcttgatcatgcgcttcaatgatgagagccaaaagt 405
            |||||| ||||||  | ||||| ||||||||||| ||||||||||  |  ||||| ||||
Sbjct: 1842 tttacattctgaaattctgcctcgtcttgatcatacgcttcaatgcggcaagccagaagt 1783

                                                                        
Query: 406  tgcactcgtcccaatcactggtcgtcagaagaatctgaagttgcatcgcggtggcaaaat 465
            ||||||||||||| || || || |||||||| | |||||| |||||||| ||||||||||
Sbjct: 1782 tgcactcgtcccagtcgctcgttgtcagaagtacctgaaggtgcatcgcagtggcaaaat 1723

                                                                        
Query: 466  cactactatcaagtgcactgcacatctgaatgagttttgatgaaacatttggagatatat 525
            |||  ||||||||||||||||| | ||||||||||||||||||||| |||||||||||||
Sbjct: 1722 caccgctatcaagtgcactgcaaagctgaatgagttttgatgaaacgtttggagatatat 1663

                                                                        
Query: 526  ctccagtgttgagtttcgcaaataacgccccaatcttctttgagttgtcttcaatttcac 585
            | ||||  |||||||| |||||||  |  || |||||  ||||||||||||| |||||||
Sbjct: 1662 ccccagaattgagttttgcaaatagtgttccgatctttcttgagttgtcttcgatttcac 1603

                   
Query: 586  gtttttt 592
            |||||||
Sbjct: 1602 gtttttt 1596



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 308  gtgtatacagaactagctgc 327
            ||||||||||||||||||||
Sbjct: 1877 gtgtatacagaactagctgc 1858
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>dbj|AK072927.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143H22, full
            insert sequence
          Length = 3905

 Score =  204 bits (103), Expect = 2e-49
 Identities = 211/247 (85%)
 Strand = Plus / Minus

                                                                        
Query: 346  tttacactctgaagctttgccttgtcttgatcatgcgcttcaatgatgagagccaaaagt 405
            |||||| ||||||  | ||||| ||||||||||| ||||||||||  |  ||||| ||||
Sbjct: 3526 tttacattctgaaattctgcctcgtcttgatcatacgcttcaatgcggcaagccagaagt 3467

                                                                        
Query: 406  tgcactcgtcccaatcactggtcgtcagaagaatctgaagttgcatcgcggtggcaaaat 465
            ||||||||||||| || || || |||||||| | |||||| |||||||| ||||||||||
Sbjct: 3466 tgcactcgtcccagtcgctcgttgtcagaagtacctgaaggtgcatcgcagtggcaaaat 3407

                                                                        
Query: 466  cactactatcaagtgcactgcacatctgaatgagttttgatgaaacatttggagatatat 525
            |||  ||||||||||||||||| | ||||||||||||||||||||| |||||||||||||
Sbjct: 3406 caccgctatcaagtgcactgcaaagctgaatgagttttgatgaaacgtttggagatatat 3347

                                                                        
Query: 526  ctccagtgttgagtttcgcaaataacgccccaatcttctttgagttgtcttcaatttcac 585
            | ||||  |||||||| |||||||  |  || |||||  ||||||||||||| |||||||
Sbjct: 3346 ccccagaattgagttttgcaaatagtgttccgatctttcttgagttgtcttcgatttcac 3287

                   
Query: 586  gtttttt 592
            |||||||
Sbjct: 3286 gtttttt 3280



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 308  gtgtatacagaactagctgc 327
            ||||||||||||||||||||
Sbjct: 3561 gtgtatacagaactagctgc 3542
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>dbj|AB042102.1| Oryza sativa SEC31 mRNA, complete cds
          Length = 3694

 Score =  204 bits (103), Expect = 2e-49
 Identities = 211/247 (85%)
 Strand = Plus / Minus

                                                                        
Query: 346  tttacactctgaagctttgccttgtcttgatcatgcgcttcaatgatgagagccaaaagt 405
            |||||| ||||||  | ||||| ||||||||||| ||||||||||  |  ||||| ||||
Sbjct: 3283 tttacattctgaaattctgcctcgtcttgatcatacgcttcaatgcggcaagccagaagt 3224

                                                                        
Query: 406  tgcactcgtcccaatcactggtcgtcagaagaatctgaagttgcatcgcggtggcaaaat 465
            ||||||||||||| || || || |||||||| | |||||| |||||||| ||||||||||
Sbjct: 3223 tgcactcgtcccagtcgctcgttgtcagaagtacctgaaggtgcatcgcagtggcaaaat 3164

                                                                        
Query: 466  cactactatcaagtgcactgcacatctgaatgagttttgatgaaacatttggagatatat 525
            |||  ||||||||||||||||| | ||||||||||||||||||||| |||||||||||||
Sbjct: 3163 caccgctatcaagtgcactgcaaagctgaatgagttttgatgaaacgtttggagatatat 3104

                                                                        
Query: 526  ctccagtgttgagtttcgcaaataacgccccaatcttctttgagttgtcttcaatttcac 585
            | ||||  |||||||| |||||||  |  || |||||  ||||||||||||| |||||||
Sbjct: 3103 ccccagaattgagttttgcaaatagtgttccgatctttcttgagttgtcttcgatttcac 3044

                   
Query: 586  gtttttt 592
            |||||||
Sbjct: 3043 gtttttt 3037



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 308  gtgtatacagaactagctgc 327
            ||||||||||||||||||||
Sbjct: 3318 gtgtatacagaactagctgc 3299
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>gb|AY596611.1| Saccharum officinarum clone SCCCCL4015D05, complete sequence
          Length = 1853

 Score =  165 bits (83), Expect = 2e-37
 Identities = 206/247 (83%)
 Strand = Plus / Minus

                                                                        
Query: 346  tttacactctgaagctttgccttgtcttgatcatgcgcttcaatgatgagagccaaaagt 405
            |||||| ||||||  | ||||| ||||||||||| ||||||||||  |  ||||| ||||
Sbjct: 1392 tttacattctgaaattctgcctcgtcttgatcatccgcttcaatgccgcaagccagaagt 1333

                                                                        
Query: 406  tgcactcgtcccaatcactggtcgtcagaagaatctgaagttgcatcgcggtggcaaaat 465
            ||||||| ||||||||||| ||||| |  || | ||| || ||||| || ||||||||||
Sbjct: 1332 tgcactcatcccaatcacttgtcgttaagagtacctggaggtgcattgcagtggcaaaat 1273

                                                                        
Query: 466  cactactatcaagtgcactgcacatctgaatgagttttgatgaaacatttggagatatat 525
            |||||  ||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 1272 cactagcatcaattgcactgcacaactgaatgagttttgatgaaacatttggagatatgt 1213

                                                                        
Query: 526  ctccagtgttgagtttcgcaaataacgccccaatcttctttgagttgtcttcaatttcac 585
            | ||| | || ||||| | ||| || ||||| || ||| |||| ||||| ||||||||||
Sbjct: 1212 cgccactatttagttttgaaaacaatgcccctattttccttgaattgtcctcaatttcac 1153

                   
Query: 586  gtttttt 592
            | |||||
Sbjct: 1152 gcttttt 1146
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  153 bits (77), Expect = 8e-34
 Identities = 134/153 (87%)
 Strand = Plus / Minus

                                                                            
Query: 440      ctgaagttgcatcgcggtggcaaaatcactactatcaagtgcactgcacatctgaatgag 499
                |||||| |||||||| |||||||||||||  ||||||||||||||||| | |||||||||
Sbjct: 27611305 ctgaaggtgcatcgcagtggcaaaatcaccgctatcaagtgcactgcaaagctgaatgag 27611246

                                                                            
Query: 500      ttttgatgaaacatttggagatatatctccagtgttgagtttcgcaaataacgccccaat 559
                |||||||||||| |||||||||||||| ||||  |||||||| |||||||  |  || ||
Sbjct: 27611245 ttttgatgaaacgtttggagatatatccccagaattgagttttgcaaatagtgttccgat 27611186

                                                 
Query: 560      cttctttgagttgtcttcaatttcacgtttttt 592
                |||  ||||||||||||| ||||||||||||||
Sbjct: 27611185 ctttcttgagttgtcttcgatttcacgtttttt 27611153



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 76/91 (83%)
 Strand = Plus / Minus

                                                                            
Query: 346      tttacactctgaagctttgccttgtcttgatcatgcgcttcaatgatgagagccaaaagt 405
                |||||| ||||||  | ||||| ||||||||||| ||||||||||  |  ||||| ||||
Sbjct: 27611878 tttacattctgaaattctgcctcgtcttgatcatacgcttcaatgcggcaagccagaagt 27611819

                                               
Query: 406      tgcactcgtcccaatcactggtcgtcagaag 436
                ||||||||||||| || || || ||||||||
Sbjct: 27611818 tgcactcgtcccagtcgctcgttgtcagaag 27611788



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 308      gtgtatacagaactagctgc 327
                ||||||||||||||||||||
Sbjct: 27611913 gtgtatacagaactagctgc 27611894
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>dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0047B07
          Length = 157797

 Score =  153 bits (77), Expect = 8e-34
 Identities = 134/153 (87%)
 Strand = Plus / Minus

                                                                         
Query: 440   ctgaagttgcatcgcggtggcaaaatcactactatcaagtgcactgcacatctgaatgag 499
             |||||| |||||||| |||||||||||||  ||||||||||||||||| | |||||||||
Sbjct: 68298 ctgaaggtgcatcgcagtggcaaaatcaccgctatcaagtgcactgcaaagctgaatgag 68239

                                                                         
Query: 500   ttttgatgaaacatttggagatatatctccagtgttgagtttcgcaaataacgccccaat 559
             |||||||||||| |||||||||||||| ||||  |||||||| |||||||  |  || ||
Sbjct: 68238 ttttgatgaaacgtttggagatatatccccagaattgagttttgcaaatagtgttccgat 68179

                                              
Query: 560   cttctttgagttgtcttcaatttcacgtttttt 592
             |||  ||||||||||||| ||||||||||||||
Sbjct: 68178 ctttcttgagttgtcttcgatttcacgtttttt 68146



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 76/91 (83%)
 Strand = Plus / Minus

                                                                         
Query: 346   tttacactctgaagctttgccttgtcttgatcatgcgcttcaatgatgagagccaaaagt 405
             |||||| ||||||  | ||||| ||||||||||| ||||||||||  |  ||||| ||||
Sbjct: 68871 tttacattctgaaattctgcctcgtcttgatcatacgcttcaatgcggcaagccagaagt 68812

                                            
Query: 406   tgcactcgtcccaatcactggtcgtcagaag 436
             ||||||||||||| || || || ||||||||
Sbjct: 68811 tgcactcgtcccagtcgctcgttgtcagaag 68781



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 308   gtgtatacagaactagctgc 327
             ||||||||||||||||||||
Sbjct: 68906 gtgtatacagaactagctgc 68887
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>emb|AL935181.5| Zebrafish DNA sequence from clone CH211-162K9, complete sequence
          Length = 156592

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 3     gtattttaaaggtccagactgat 25
             |||||||||||||||||||||||
Sbjct: 52054 gtattttaaaggtccagactgat 52076
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>gb|AC113312.7| Mus musculus chromosome 7, clone RP23-440K7, complete sequence
          Length = 215675

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 520   atatatctccagtgttgagttt 541
             ||||||||||||||||||||||
Sbjct: 30745 atatatctccagtgttgagttt 30766
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>dbj|AK133737.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:5730403H05 product:hypothetical
           protein, full insert sequence
          Length = 2860

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 520 atatatctccagtgttgagttt 541
           ||||||||||||||||||||||
Sbjct: 592 atatatctccagtgttgagttt 613
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>dbj|AK163265.1| Mus musculus 2 cells egg cDNA, RIKEN full-length enriched library,
           clone:B020007G14 product:unclassifiable, full insert
           sequence
          Length = 2268

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 520 atatatctccagtgttgagttt 541
           ||||||||||||||||||||||
Sbjct: 454 atatatctccagtgttgagttt 475
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>dbj|AK158571.1| Mus musculus visual cortex cDNA, RIKEN full-length enriched
           library, clone:K230015A11 product:hypothetical
           Arginine-rich region profile containing protein, full
           insert sequence
          Length = 3053

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 520 atatatctccagtgttgagttt 541
           ||||||||||||||||||||||
Sbjct: 783 atatatctccagtgttgagttt 804
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>dbj|AK029831.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4931406B08 product:unclassifiable, full
           insert sequence
          Length = 3128

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 520 atatatctccagtgttgagttt 541
           ||||||||||||||||||||||
Sbjct: 903 atatatctccagtgttgagttt 924
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>dbj|AK018351.1| Mus musculus 12 days embryo female ovary cDNA, RIKEN full-length
           enriched library, clone:6620401M08
           product:unclassifiable, full insert sequence
          Length = 2502

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 520 atatatctccagtgttgagttt 541
           ||||||||||||||||||||||
Sbjct: 614 atatatctccagtgttgagttt 635
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>gb|AC122017.5| Mus musculus BAC clone RP24-361J4 from 7, complete sequence
          Length = 158807

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 520  atatatctccagtgttgagttt 541
            ||||||||||||||||||||||
Sbjct: 7407 atatatctccagtgttgagttt 7386
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>emb|CR548612.1| Paramecium tetraurelia macronuclear largest chromosome, complete sequence
          Length = 984602

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 513    tttggagatatatctccagtg 533
              |||||||||||||||||||||
Sbjct: 868198 tttggagatatatctccagtg 868218
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>gb|AC173452.3| Papio anubis clone RP41-379N3, complete sequence
          Length = 93212

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 134   gcaaaggaacatggaaaaact 154
             |||||||||||||||||||||
Sbjct: 92089 gcaaaggaacatggaaaaact 92069
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>gb|AC159930.3| Papio anubis clone RP41-174M1, complete sequence
          Length = 163985

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 134  gcaaaggaacatggaaaaact 154
            |||||||||||||||||||||
Sbjct: 3477 gcaaaggaacatggaaaaact 3457
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>gb|AC171175.1| Mus musculus chromosome 19, clone wi1-1715L8, complete sequence
          Length = 37475

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 198   tttcagcaacaagaagctcc 217
             ||||||||||||||||||||
Sbjct: 32934 tttcagcaacaagaagctcc 32915
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>gb|AC152065.4| Mus musculus BAC clone RP23-16D9 from chromosome 12, complete sequence
          Length = 226392

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    ccaaaaccaacaacaccccc 114
             ||||||||||||||||||||
Sbjct: 42511 ccaaaaccaacaacaccccc 42492
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>ref|XM_609134.2| PREDICTED: Bos taurus similar to Inner nuclear membrane protein Man1
            (LEM domain containing protein 3) (LOC530659), mRNA
          Length = 4809

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 501  tttgatgaaacatttggaga 520
            ||||||||||||||||||||
Sbjct: 1555 tttgatgaaacatttggaga 1574
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>gb|AC092129.3| Homo sapiens chromosome 16 clone RP11-140O8, complete sequence
          Length = 190333

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 79    ttacaacttataatttccaa 98
             ||||||||||||||||||||
Sbjct: 92131 ttacaacttataatttccaa 92150
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>ref|XM_721292.1| Plasmodium yoelii yoelii str. 17XNL mechanosensitive ion channel
           (PY05855) partial mRNA
          Length = 5148

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 506 tgaaacatttggagatatat 525
           ||||||||||||||||||||
Sbjct: 195 tgaaacatttggagatatat 214
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>ref|XM_739742.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000804.04.0)
           partial mRNA
          Length = 2394

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 506 tgaaacatttggagatatat 525
           ||||||||||||||||||||
Sbjct: 195 tgaaacatttggagatatat 214
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>gb|AC140103.7| Medicago truncatula clone mth2-9i16, complete sequence
          Length = 96937

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 81    acaacttataatttccaaaa 100
             ||||||||||||||||||||
Sbjct: 72245 acaacttataatttccaaaa 72264
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>gb|AE016828.2| Coxiella burnetii RSA 493, complete genome
          Length = 1995281

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 388     atgatgagagccaaaagttg 407
               ||||||||||||||||||||
Sbjct: 1313450 atgatgagagccaaaagttg 1313431
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>emb|AL606668.2|OSJN00083 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064G10,
              complete sequence
          Length = 150206

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 496    tgagttttgatgaaacattt 515
              ||||||||||||||||||||
Sbjct: 103015 tgagttttgatgaaacattt 102996
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>emb|AL590146.2| Zebrafish DNA sequence from clone RP71-20I5 in linkage group 9 Contains
             a gene for a novel protein similar to human FLJ20730
             protein,  a gene for a novel protein similar to rat
             steroid sensitive gene-1 protein (SSG-1), a gene for a
             novel protein similar to vertebrate coagulation factor V
             and VIII, a gene for a novel protein similar to human
             G-protein coupled receptor RE2, a gene for a novel
             transcript and a CpG island, complete sequence
          Length = 121086

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 470   actatcaagtgcactgcaca 489
             ||||||||||||||||||||
Sbjct: 54924 actatcaagtgcactgcaca 54943
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>emb|CR936324.2| Medicago truncatula chromosome 5 clone mth2-62a22, COMPLETE SEQUENCE
          Length = 121881

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    aaatggaccagctagtatga 62
             ||||||||||||||||||||
Sbjct: 45289 aaatggaccagctagtatga 45270
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>gb|AC117589.13| Mus musculus chromosome 18, clone RP23-222A8, complete sequence
          Length = 211309

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 285   acaattttgacaatcagaaaaagg 308
             ||||||||||| ||||||||||||
Sbjct: 89220 acaattttgactatcagaaaaagg 89243
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>emb|BX510315.6| Zebrafish DNA sequence from clone CH211-59I18 in linkage group 24,
             complete sequence
          Length = 202562

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 300   agaaaaaggtgtatacagaa 319
             ||||||||||||||||||||
Sbjct: 93535 agaaaaaggtgtatacagaa 93554
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>gb|AC162161.9| Medicago truncatula clone mth2-2g22, complete sequence
          Length = 109841

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 90    aatttccaaaaccaacaaca 109
             ||||||||||||||||||||
Sbjct: 59862 aatttccaaaaccaacaaca 59843
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>gb|AC114497.1| Homo sapiens chromosome 1 clone RP11-568G23, complete sequence
          Length = 127715

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 494   aatgagttttgatgaaacat 513
             ||||||||||||||||||||
Sbjct: 53980 aatgagttttgatgaaacat 53999
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 496      tgagttttgatgaaacattt 515
                ||||||||||||||||||||
Sbjct: 34648894 tgagttttgatgaaacattt 34648875
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>gb|AC132623.4| Mus musculus BAC clone RP23-123N23 from chromosome 12, complete
             sequence
          Length = 195885

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 95    ccaaaaccaacaacaccccc 114
             ||||||||||||||||||||
Sbjct: 49841 ccaaaaccaacaacaccccc 49860
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>gb|AC121253.3| Homo sapiens chromosome 3 clone RP11-208G16, complete sequence
          Length = 142193

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   aggaacatggaaaaactatt 157
             ||||||||||||||||||||
Sbjct: 27432 aggaacatggaaaaactatt 27451
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>gb|AE001439.1| Helicobacter pylori J99, complete genome
          Length = 1643831

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 143    catggaaaaactattgagtc 162
              ||||||||||||||||||||
Sbjct: 685442 catggaaaaactattgagtc 685461
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>emb|AL110479.1|CEY105C5B Caenorhabditis elegans YAC Y105C5B, complete sequence
          Length = 321304

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 283    taacaattttgacaatcaga 302
              ||||||||||||||||||||
Sbjct: 106710 taacaattttgacaatcaga 106691
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>gb|AC109616.9| Mus musculus chromosome 19, clone RP23-449C1, complete sequence
          Length = 167801

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 198    tttcagcaacaagaagctcc 217
              ||||||||||||||||||||
Sbjct: 139473 tttcagcaacaagaagctcc 139492
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>emb|AL928830.10| Zebrafish DNA sequence from clone CH211-119E16, complete sequence
          Length = 182614

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 300   agaaaaaggtgtatacagaa 319
             ||||||||||||||||||||
Sbjct: 75526 agaaaaaggtgtatacagaa 75545
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>gb|AC149598.2| Mus musculus BAC clone RP24-119N9 from 18, complete sequence
          Length = 161955

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 285   acaattttgacaatcagaaaaagg 308
             ||||||||||| ||||||||||||
Sbjct: 36475 acaattttgactatcagaaaaagg 36452


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,078,946
Number of Sequences: 3902068
Number of extensions: 5078946
Number of successful extensions: 102870
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102677
Number of HSP's gapped (non-prelim): 183
length of query: 592
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 569
effective length of database: 17,143,297,704
effective search space: 9754536393576
effective search space used: 9754536393576
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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