ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags37h15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ECE1_BOVIN (P42891) Endothelin-converting enzyme 1 (EC 3.4.24.71... 30 6.2
2GP158_MOUSE (Q8C419) Probable G-protein coupled receptor 158 pre... 30 6.2
3IF3C_ORYSA (Q94HF1) Eukaryotic translation initiation factor 3 s... 30 8.1

>ECE1_BOVIN (P42891) Endothelin-converting enzyme 1 (EC 3.4.24.71) (ECE-1)|
          Length = 754

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = -3

Query: 387 IISHDHTTPYLPE--SGDSKSSNSGLLDILPRGVQVP 283
           + SH HT+P+     S DSK+SNS ++ +   G+ +P
Sbjct: 211 VTSHYHTSPFFSVYVSADSKNSNSNVIQVDQSGLGLP 247



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>GP158_MOUSE (Q8C419) Probable G-protein coupled receptor 158 precursor|
          Length = 1200

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = -3

Query: 357  LPESGDSKSSNSGLLDILPRGVQVPVNSHEILYTLYDNLDFPVPPLREALLSNSVTMRSS 178
            L + GD +   S  +DI+P       NSH+ L +  +   +   PL +     SVT+ +S
Sbjct: 1128 LNQMGDQEKQTSSSVDIIPGSCNSSNNSHQPLTSRAEVCPWEFEPLEQPNAERSVTLPAS 1187



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>IF3C_ORYSA (Q94HF1) Eukaryotic translation initiation factor 3 subunit 12|
           (eIF-3 p25) (eIF3k)
          Length = 226

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 20/72 (27%), Positives = 33/72 (45%)
 Frame = -3

Query: 423 HNIVRQQHKSEGIISHDHTTPYLPESGDSKSSNSGLLDILPRGVQVPVNSHEILYTLYDN 244
           H  + +Q K+  ++SH   T    +  D  S N  +LD++P G +  + S+ I       
Sbjct: 92  HVQMEEQFKTLIVLSHYLETARFRQFWDEASKNRNILDVVP-GFEQAIQSYAIHVLSLTY 150

Query: 243 LDFPVPPLREAL 208
              P P L EA+
Sbjct: 151 QKVPRPVLAEAI 162


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,318,047
Number of Sequences: 219361
Number of extensions: 1839702
Number of successful extensions: 4421
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4416
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6143359464
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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