ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags37h06 |
|---|---|
| Clone Library Name | barley_pub |
>HHEX_MOUSE (P43120) Homeobox protein PRH (Hematopoietically expressed| homeobox) (Homeobox protein HEX) Length = 271 Score = 33.5 bits (75), Expect = 0.13 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%) Frame = +2 Query: 137 NNGFKHLITGFRTWVHQDPSCHPTLSPKADQALTGSLGKSACSG--YPSPST 286 N+ F L++ +RT V++ HP S AL + G S G YP P T Sbjct: 56 NSSFTSLVSSYRTPVYEPTPVHPAFSHHPAAALAAAYGPSGFGGPLYPFPRT 107
>DPOL_HPBDC (P30028) P protein [Includes: DNA-directed DNA polymerase (EC| 2.7.7.7); RNA-directed DNA polymerase (EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4)] Length = 787 Score = 33.1 bits (74), Expect = 0.17 Identities = 14/36 (38%), Positives = 23/36 (63%) Frame = -1 Query: 356 WKWLTGQEQPPEXVNSNPVFAAIKSKVTDNLSKHSS 249 WK+LT + P+ ++ PV A +K+K DN+ +H S Sbjct: 130 WKYLTPAKFWPKSISYFPVQAGVKAKYPDNVMQHES 165
>HHEX_HUMAN (Q03014) Homeobox protein PRH (Hematopoietically expressed| homeobox) (Homeobox protein HEX) Length = 270 Score = 32.0 bits (71), Expect = 0.37 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%) Frame = +2 Query: 137 NNGFKHLITGFRTWVHQDPSCHPTLSPKADQALTGSLGKSACSG--YPSPST 286 N+ F L++ +RT V++ HP S + AL + G G YP P T Sbjct: 55 NSSFTSLVSPYRTPVYEPTPIHPAFSHHSAAALAAAYGPGGFGGPLYPFPRT 106
>DPOL_HPBDW (P17193) P protein [Includes: DNA-directed DNA polymerase (EC| 2.7.7.7); RNA-directed DNA polymerase (EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4)] Length = 788 Score = 32.0 bits (71), Expect = 0.37 Identities = 13/36 (36%), Positives = 23/36 (63%) Frame = -1 Query: 356 WKWLTGQEQPPEXVNSNPVFAAIKSKVTDNLSKHSS 249 WK+LT + P+ ++ PV A +K+K DN+ +H + Sbjct: 130 WKYLTPAKFWPKSISYFPVQAGVKAKYPDNVMQHEA 165
>DPOL_HPBDB (P17192) P protein [Includes: DNA-directed DNA polymerase (EC| 2.7.7.7); RNA-directed DNA polymerase (EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4)] Length = 788 Score = 32.0 bits (71), Expect = 0.37 Identities = 13/36 (36%), Positives = 23/36 (63%) Frame = -1 Query: 356 WKWLTGQEQPPEXVNSNPVFAAIKSKVTDNLSKHSS 249 WK+LT + P+ ++ PV A +K+K DN+ +H + Sbjct: 130 WKYLTPAKFWPKSISYFPVQAGVKAKYPDNVMQHEA 165
>DPOL_HPBDU (P03162) P protein [Includes: DNA-directed DNA polymerase (EC| 2.7.7.7); RNA-directed DNA polymerase (EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4)] Length = 836 Score = 30.8 bits (68), Expect = 0.83 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = -1 Query: 356 WKWLTGQEQPPEXVNSNPVFAAIKSKVTDNLSKHSS 249 WK+LT + P+ ++ PV +K K DN+ +H S Sbjct: 180 WKYLTPAKFWPKSISYFPVQVGVKPKYPDNVMQHES 215
>Y1541_METCA (Q608F1) Hypothetical UPF0350 protein MCA1541| Length = 83 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/35 (40%), Positives = 22/35 (62%) Frame = -1 Query: 380 LDLENPDLWKWLTGQEQPPEXVNSNPVFAAIKSKV 276 LDL++ DLW+ LTG +P +P AA+ +K+ Sbjct: 45 LDLQDADLWRCLTGLARP-----EDPALAALAAKL 74
>PICO_DROME (Q9V7S5) Putative inorganic phosphate cotransporter| Length = 529 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Frame = +2 Query: 167 FRTWVHQDPSCHPTLSPKADQALTGSL-GKSACSGYPSP 280 F +VH+DPS HPT+ + + + SL G P P Sbjct: 248 FLIFVHEDPSSHPTIDEREKKYINDSLWGTDVVKSPPIP 286
>Y2079_XANAC (Q8PKT3) Hypothetical UPF0350 protein XAC2079| Length = 109 Score = 28.5 bits (62), Expect = 4.1 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = -1 Query: 380 LDLENPDLWKWLTGQEQPPEXVNS 309 LD E+ LW+W G E P+ N+ Sbjct: 75 LDCEDDKLWRWFMGYEACPDAANA 98
>PAM1_YEAST (P37304) Protein PAM1| Length = 830 Score = 28.5 bits (62), Expect = 4.1 Identities = 20/68 (29%), Positives = 31/68 (45%) Frame = -1 Query: 380 LDLENPDLWKWLTGQEQPPEXVNSNPVFAAIKSKVTDNLSKHSSPETRSAPGQPWVRGWD 201 L+L+ L + Q++PP+ V S P +N +K +P +S+ QP Sbjct: 507 LELQRKALQQQQQYQQRPPKQVYSGPSGTPTSG---NNNNKSYNPNRKSSYSQPQHVAMM 563 Query: 200 DKRGLDGP 177 RGL GP Sbjct: 564 TSRGLHGP 571
>Y2306_XANOR (Q5H0G1) Hypothetical UPF0350 protein XOO2306| Length = 107 Score = 28.1 bits (61), Expect = 5.4 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = -1 Query: 380 LDLENPDLWKWLTGQEQPPEXVNS 309 LD E+ LW+W G E P+ N+ Sbjct: 73 LDCEDDKLWRWFMGYEACPDVANA 96
>KCRU_MOUSE (P30275) Creatine kinase, ubiquitous mitochondrial precursor (EC| 2.7.3.2) (U-MtCK) (Mia-CK) (Acidic-type mitochondrial creatine kinase) Length = 418 Score = 28.1 bits (61), Expect = 5.4 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = -2 Query: 253 LPQRPGQRLVSLG*EGGMTRGVLMDPST 170 L RPG RL++L G +T G+L+ P + Sbjct: 9 LSARPGLRLLALAGAGSLTAGILLRPES 36
>CRF1_YARLI (P45815) Copper resistance protein CRF1| Length = 411 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/52 (28%), Positives = 25/52 (48%) Frame = -1 Query: 374 LENPDLWKWLTGQEQPPEXVNSNPVFAAIKSKVTDNLSKHSSPETRSAPGQP 219 L + +LW + G + P V +NP +A S + S +++PE QP Sbjct: 332 LSSWNLWGGVGGSDAPEMSVAANPSASASASSIQTPPSSNATPEWVQGQQQP 383
>Y3533_METJA (Q60290) Hypothetical protein MJECL33| Length = 408 Score = 27.3 bits (59), Expect = 9.2 Identities = 18/62 (29%), Positives = 28/62 (45%) Frame = -1 Query: 380 LDLENPDLWKWLTGQEQPPEXVNSNPVFAAIKSKVTDNLSKHSSPETRSAPGQPWVRGWD 201 +D +NP WK T Q+ N + + IKS++ DNL + + +VRG Sbjct: 94 IDAKNPRFWKLYTLQKSEESDKYFNKLISPIKSRL-DNLWMPTGDLEKFLKKADYVRGLS 152 Query: 200 DK 195 K Sbjct: 153 TK 154
>Y2128_XANCP (Q8P8V6) Hypothetical UPF0350 protein XCC2128| Length = 86 Score = 27.3 bits (59), Expect = 9.2 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = -1 Query: 380 LDLENPDLWKWLTGQEQPPEXVNS 309 LD E+ LW+W G E P+ N+ Sbjct: 52 LDCEDDKLWRWFMGYEACPDADNA 75
>Y1986_XANC8 (Q4UV74) Hypothetical UPF0350 protein XC_1986| Length = 86 Score = 27.3 bits (59), Expect = 9.2 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = -1 Query: 380 LDLENPDLWKWLTGQEQPPEXVNS 309 LD E+ LW+W G E P+ N+ Sbjct: 52 LDCEDDKLWRWFMGYEACPDADNA 75
>SUIS_RABIT (P07768) Sucrase-isomaltase, intestinal [Contains: Sucrase (EC| 3.2.1.48); Isomaltase (EC 3.2.1.10)] Length = 1826 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = +3 Query: 189 TPLVIPPSHPRLTRR*PGLWGRVLAQVIRHLRLNGS 296 T L PP P LT+R GL R + H+ +GS Sbjct: 1412 TELNYPPYFPELTKRTDGLHFRTMCMETEHILSDGS 1447 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,920,129 Number of Sequences: 219361 Number of extensions: 1088298 Number of successful extensions: 2933 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2643 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2933 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 1396778976 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
