ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags37h05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_482574.1| Oryza sativa (japonica cultivar-group), mRNA 210 4e-51
2dbj|AK104066.1| Oryza sativa (japonica cultivar-group) cDNA clon... 210 4e-51
3dbj|AK067548.1| Oryza sativa (japonica cultivar-group) cDNA clon... 210 4e-51
4dbj|AK061305.1| Oryza sativa (japonica cultivar-group) cDNA clon... 210 4e-51
5gb|AY105757.1| Zea mays PCO135246 mRNA sequence 192 1e-45
6dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 143 9e-31
7dbj|AP005757.2| Oryza sativa (japonica cultivar-group) genomic D... 143 9e-31
8gb|DQ222499.1| Solanum tuberosum clone 106A06 polypyrimidine tra... 115 2e-22
9gb|DQ252520.1| Solanum tuberosum clone 103F01 polypyrimidine tra... 115 2e-22
10gb|AC148485.10| Medicago truncatula clone mth2-46j5, complete se... 113 8e-22
11gb|AC122724.36| Medicago truncatula clone mth2-14m14, complete s... 113 8e-22
12gb|AC140033.3| Medicago truncatula clone mth2-24f11, complete se... 109 1e-20
13gb|AC140025.7| Medicago truncatula clone mth2-11i16, complete se... 109 1e-20
14dbj|AP004962.1| Lotus japonicus genomic DNA, chromosome 1, clone... 109 1e-20
15gb|AC008261.5|ATAC008261 Arabidopsis thaliana chromosome III BAC... 107 5e-20
16ref|NM_110980.2| Arabidopsis thaliana PTB (POLYPYRIMIDINE TRACT-... 105 2e-19
17gb|AF076924.1|AF076924 Arabidopsis thaliana polypyrimidine tract... 105 2e-19
18emb|BX825797.1|CNS0A7GJ Arabidopsis thaliana Full-length cDNA Co... 103 8e-19
19emb|BX822973.1|CNS0A5VG Arabidopsis thaliana Full-length cDNA Co... 98 5e-17
20ref|XM_470716.1| Oryza sativa (japonica cultivar-group), mRNA 92 3e-15
21dbj|AK101213.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 3e-15
22dbj|AK062562.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 3e-15
23emb|BX822327.1|CNS0A60G Arabidopsis thaliana Full-length cDNA Co... 90 1e-14
24gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 82 3e-12
25gb|AC084766.8| Oryza sativa chromosome 3 BAC OSJNBb0048D20 genom... 82 3e-12
26dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 82 3e-12
27dbj|AP003472.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 44 0.60
28dbj|AP000424.3| Homo sapiens genomic DNA, chromosome 8q23, clone... 44 0.60
29gb|AC069503.25| Homo sapiens 12 BAC RP11-87C12 (Roswell Park Can... 42 2.4
30emb|AL731549.11| Human DNA sequence from clone RP11-113I9 on chr... 42 2.4
31emb|AL157814.14| Human DNA sequence from clone RP11-285E18 on ch... 42 2.4
32gb|AC110795.4| Homo sapiens BAC clone RP11-628A4 from 4, complet... 42 2.4
33gb|AC021017.4|AC021017 Homo sapiens BAC clone RP11-382E10 from 8... 42 2.4
34gb|AC154656.2| Mus musculus BAC clone RP24-268M5 from chromosome... 42 2.4
35gb|AC079250.7| Homo sapiens BAC clone RP11-62I18 from 2, complet... 42 2.4
36emb|AL935195.14| Zebrafish DNA sequence from clone CH211-277C7 i... 42 2.4
37dbj|AP002992.4| Homo sapiens genomic DNA, chromosome 11 clone:CT... 42 2.4
38dbj|AP002813.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 2.4
39gb|BT020199.1| Arabidopsis thaliana At5g53180 mRNA, complete cds 40 9.4
40gb|AC163349.3| Mus musculus BAC clone RP23-188F5 from chromosome... 40 9.4
41gb|BT015760.1| Arabidopsis thaliana At5g53180 mRNA, complete cds 40 9.4
42gb|AY578717.1| Rivulus lyricauda tRNA-Ile gene, partial sequence... 40 9.4
43ref|NM_001039195.1| Mus musculus glutamate receptor, ionotropic,... 40 9.4
44ref|NM_013540.2| Mus musculus glutamate receptor, ionotropic, AM... 40 9.4
45gb|BC053509.1| Homo sapiens 5,10-methylenetetrahydrofolate reduc... 40 9.4
46ref|NM_005957.3| Homo sapiens 5,10-methylenetetrahydrofolate red... 40 9.4
47gb|BC044524.1| Danio rerio sb:cb825, mRNA (cDNA clone IMAGE:3818... 40 9.4
48gb|BC066193.1| Mus musculus glutamate receptor, ionotropic, AMPA... 40 9.4
49gb|BC018766.1| Homo sapiens 5,10-methylenetetrahydrofolate reduc... 40 9.4
50gb|BC011614.2| Homo sapiens 5,10-methylenetetrahydrofolate reduc... 40 9.4
51gb|AF398933.1| Homo sapiens methylenetetrahydrofolate reductase ... 40 9.4
52emb|AJ243941.1|PSP243941 Pseudomonas sp. strain HR199 partial va... 40 9.4
53gb|AC099609.8| Mus musculus chromosome 7, clone RP23-376D24, com... 40 9.4
54gb|AC111035.8| Mus musculus chromosome 3, clone RP24-507N18, com... 40 9.4
55emb|Z96074.4|HS399M14 Human DNA sequence from clone RP3-399M14 o... 40 9.4
56emb|AL953897.6| Human DNA sequence from clone RP11-56N19 on chro... 40 9.4
57emb|AL365190.16| Human DNA sequence from clone RP11-512H14 on ch... 40 9.4
58emb|AL035668.15|HS859D4 Human DNA sequence from clone RP5-859D4 ... 40 9.4
59emb|X57498.1|MMGLUR2 M.musculus mRNA for glutamate receptor 2 40 9.4
60gb|AC109583.2| Homo sapiens chromosome 3 clone RP11-427P5, compl... 40 9.4
61gb|AC022716.13| Homo sapiens chromosome 8, clone RP11-135I5, com... 40 9.4
62dbj|AK134772.1| Mus musculus adult male medulla oblongata cDNA, ... 40 9.4
63gb|AC007923.7| Homo sapiens chromosome 17, clone RP11-805L22, co... 40 9.4
64gb|AC084209.6| Homo sapiens BAC clone RP11-462C24 from 4, comple... 40 9.4
65dbj|AK134647.1| Mus musculus adult male medulla oblongata cDNA, ... 40 9.4
66dbj|AK134572.1| Mus musculus adult male medulla oblongata cDNA, ... 40 9.4
67gb|AC021242.10| Homo sapiens chromosome 8, clone RP11-375N15, co... 40 9.4
68dbj|AK141525.1| Mus musculus adult male hippocampus cDNA, RIKEN ... 40 9.4
69gb|AC106821.2| Homo sapiens chromosome 5 clone RP11-730N24, comp... 40 9.4
70dbj|AK163941.1| Mus musculus 0 day neonate cerebellum cDNA, RIKE... 40 9.4
71dbj|AK046861.1| Mus musculus 10 days neonate medulla oblongata c... 40 9.4
72gb|AC158545.2| Mus musculus 10 BAC RP24-401G4 (Roswell Park Canc... 40 9.4
73dbj|AK086614.1| Mus musculus 15 days embryo head cDNA, RIKEN ful... 40 9.4
74dbj|AK044574.1| Mus musculus adult retina cDNA, RIKEN full-lengt... 40 9.4
75dbj|AK043490.1| Mus musculus 7 days neonate cerebellum cDNA, RIK... 40 9.4
76dbj|AK014389.1| Mus musculus adult male brain cDNA, RIKEN full-l... 40 9.4
77dbj|AB111957.1| Mus musculus glur-2 mRNA for AMPA-selective glut... 40 9.4
78gb|AF260233.1|AF260233 Homo sapiens methylenetetrahydrofolate re... 40 9.4
79gb|AC084451.1|AC084451 Caenorhabditis briggsae cosmid CB023N02, ... 40 9.4
80gb|AC079905.28| Homo sapiens 12 BAC RP11-813P10 (Roswell Park Ca... 40 9.4
81gb|AC007340.8| Homo sapiens chromosome 16 clone RP11-358O5, comp... 40 9.4
82gb|AC099627.10| Mus musculus chromosome 7, clone RP24-69E5, comp... 40 9.4
83gb|BC048248.1| Mus musculus glutamate receptor, ionotropic, AMPA... 40 9.4
84gb|AF040249.1|AF040249 Homo sapiens bone morphogenetic protein 2... 40 9.4
85gb|AF129404.1|AF129404 Buchnera aphidicola natural-host Melaphis... 40 9.4
86gb|AC161468.2| Gallus gallus BAC clone CH261-94J19 from chromoso... 40 9.4
87gb|AC164569.3| Gallus gallus BAC clone CH261-138K23 from chromos... 40 9.4
88gb|L32191.1|MUSGLURB03 Mus musculus AMPA receptor subunit (GluR-... 40 9.4
89dbj|AB209113.1| Homo sapiens mRNA for 5,10-methylenetetrahydrofo... 40 9.4
90gb|AC131263.6| Homo sapiens chromosome 11, clone RP11-348A11, co... 40 9.4 
>ref|XM_482574.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1814

 Score =  210 bits (106), Expect = 4e-51
 Identities = 162/181 (89%)
 Strand = Plus / Minus

                                                                        
Query: 506  gtgtagtccctgctcctctcgtcatgtgccttcacattcagatcagtatgacgagagtat 565
            |||||||| ||||| ||||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct: 1204 gtgtagtctctgcttctctcatcatgtgcctttacattgagatcagtatgacgagagtat 1145

                                                                        
Query: 566  gacagatgaagcttacagtaaccaccatcatatatgcaatgtccctccagagcttgttta 625
            ||||||||||||||||||||||| |||||||||||||| || || |||| ||||||||||
Sbjct: 1144 gacagatgaagcttacagtaacctccatcatatatgcagtgcccttccaaagcttgttta 1085

                                                                        
Query: 626  gcaactcctgctgttgntatatctggatactgaatcagagcctgcattccaccattcttc 685
            |||||| |||| ||||  || |||||||| ||||| |  |||||||||||||||||||||
Sbjct: 1084 gcaactgctgccgttgtgatgtctggatattgaattaaggcctgcattccaccattcttc 1025

             
Query: 686  t 686
            |
Sbjct: 1024 t 1024



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 370  ctgcatgttaggattccaggttggcacttgtccgacag 407
            ||||||||| |||||||| | |||||||||||| ||||
Sbjct: 1370 ctgcatgtttggattccaagctggcacttgtccaacag 1333
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>dbj|AK104066.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-C05, full
           insert sequence
          Length = 1209

 Score =  210 bits (106), Expect = 4e-51
 Identities = 162/181 (89%)
 Strand = Plus / Minus

                                                                       
Query: 506 gtgtagtccctgctcctctcgtcatgtgccttcacattcagatcagtatgacgagagtat 565
           |||||||| ||||| ||||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct: 612 gtgtagtctctgcttctctcatcatgtgcctttacattgagatcagtatgacgagagtat 553

                                                                       
Query: 566 gacagatgaagcttacagtaaccaccatcatatatgcaatgtccctccagagcttgttta 625
           ||||||||||||||||||||||| |||||||||||||| || || |||| ||||||||||
Sbjct: 552 gacagatgaagcttacagtaacctccatcatatatgcagtgcccttccaaagcttgttta 493

                                                                       
Query: 626 gcaactcctgctgttgntatatctggatactgaatcagagcctgcattccaccattcttc 685
           |||||| |||| ||||  || |||||||| ||||| |  |||||||||||||||||||||
Sbjct: 492 gcaactgctgccgttgtgatgtctggatattgaattaaggcctgcattccaccattcttc 433

            
Query: 686 t 686
           |
Sbjct: 432 t 432



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 370 ctgcatgttaggattccaggttggcacttgtccgacag 407
           ||||||||| |||||||| | |||||||||||| ||||
Sbjct: 778 ctgcatgtttggattccaagctggcacttgtccaacag 741
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>dbj|AK067548.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107I22, full
            insert sequence
          Length = 1814

 Score =  210 bits (106), Expect = 4e-51
 Identities = 162/181 (89%)
 Strand = Plus / Minus

                                                                        
Query: 506  gtgtagtccctgctcctctcgtcatgtgccttcacattcagatcagtatgacgagagtat 565
            |||||||| ||||| ||||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct: 1204 gtgtagtctctgcttctctcatcatgtgcctttacattgagatcagtatgacgagagtat 1145

                                                                        
Query: 566  gacagatgaagcttacagtaaccaccatcatatatgcaatgtccctccagagcttgttta 625
            ||||||||||||||||||||||| |||||||||||||| || || |||| ||||||||||
Sbjct: 1144 gacagatgaagcttacagtaacctccatcatatatgcagtgcccttccaaagcttgttta 1085

                                                                        
Query: 626  gcaactcctgctgttgntatatctggatactgaatcagagcctgcattccaccattcttc 685
            |||||| |||| ||||  || |||||||| ||||| |  |||||||||||||||||||||
Sbjct: 1084 gcaactgctgccgttgtgatgtctggatattgaattaaggcctgcattccaccattcttc 1025

             
Query: 686  t 686
            |
Sbjct: 1024 t 1024



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 370  ctgcatgttaggattccaggttggcacttgtccgacag 407
            ||||||||| |||||||| | |||||||||||| ||||
Sbjct: 1370 ctgcatgtttggattccaagctggcacttgtccaacag 1333
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>dbj|AK061305.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-H05, full
           insert sequence
          Length = 1216

 Score =  210 bits (106), Expect = 4e-51
 Identities = 162/181 (89%)
 Strand = Plus / Minus

                                                                       
Query: 506 gtgtagtccctgctcctctcgtcatgtgccttcacattcagatcagtatgacgagagtat 565
           |||||||| ||||| ||||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct: 612 gtgtagtctctgcttctctcatcatgtgcctttacattgagatcagtatgacgagagtat 553

                                                                       
Query: 566 gacagatgaagcttacagtaaccaccatcatatatgcaatgtccctccagagcttgttta 625
           ||||||||||||||||||||||| |||||||||||||| || || |||| ||||||||||
Sbjct: 552 gacagatgaagcttacagtaacctccatcatatatgcagtgcccttccaaagcttgttta 493

                                                                       
Query: 626 gcaactcctgctgttgntatatctggatactgaatcagagcctgcattccaccattcttc 685
           |||||| |||| ||||  || |||||||| ||||| |  |||||||||||||||||||||
Sbjct: 492 gcaactgctgccgttgtgatgtctggatattgaattaaggcctgcattccaccattcttc 433

            
Query: 686 t 686
           |
Sbjct: 432 t 432



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 370 ctgcatgttaggattccaggttggcacttgtccgacag 407
           ||||||||| |||||||| | |||||||||||| ||||
Sbjct: 778 ctgcatgtttggattccaagctggcacttgtccaacag 741
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>gb|AY105757.1| Zea mays PCO135246 mRNA sequence
          Length = 925

 Score =  192 bits (97), Expect = 1e-45
 Identities = 118/125 (94%)
 Strand = Plus / Minus

                                                                       
Query: 506 gtgtagtccctgctcctctcgtcatgtgccttcacattcagatcagtatgacgagagtat 565
           |||||||| ||||| ||||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct: 279 gtgtagtctctgcttctctcatcatgtgcctttacattgagatcagtatgacgagagtat 220

                                                                       
Query: 566 gacagatgaagcttacagtaaccaccatcatatatgcaatgtccctccagagcttgttta 625
           |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 219 gacagatgaagcttacagtaaccaccatcatatatgcagtgtccctccaaagcttgttta 160

                
Query: 626 gcaac 630
           |||||
Sbjct: 159 gcaac 155



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                   
Query: 647 tctggatactgaatcagagcctgcattccaccattcttct 686
           |||||||| || || |||||||||||||||||||||||||
Sbjct: 68  tctggatattggattagagcctgcattccaccattcttct 29
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  143 bits (72), Expect = 9e-31
 Identities = 99/108 (91%)
 Strand = Plus / Plus

                                                                            
Query: 534      ccttcacattcagatcagtatgacgagagtatgacagatgaagcttacagtaaccaccat 593
                |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 21167138 cctttacattgagatcagtatgacgagagtatgacagatgaagcttacagtaacctccat 21167197

                                                                
Query: 594      catatatgcaatgtccctccagagcttgtttagcaactcctgctgttg 641
                |||||||||| || || |||| |||||||||||||||| |||| ||||
Sbjct: 21167198 catatatgcagtgcccttccaaagcttgtttagcaactgctgccgttg 21167245



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                       
Query: 648      ctggatactgaatcagagcctgcattccaccattcttct 686
                ||||||| ||||| |  ||||||||||||||||||||||
Sbjct: 21168127 ctggatattgaattaaggcctgcattccaccattcttct 21168165



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                      
Query: 370      ctgcatgttaggattccaggttggcacttgtccgacag 407
                ||||||||| |||||||| | |||||||||||| ||||
Sbjct: 21166698 ctgcatgtttggattccaagctggcacttgtccaacag 21166735
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>dbj|AP005757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0413H11
          Length = 147655

 Score =  143 bits (72), Expect = 9e-31
 Identities = 99/108 (91%)
 Strand = Plus / Plus

                                                                          
Query: 534    ccttcacattcagatcagtatgacgagagtatgacagatgaagcttacagtaaccaccat 593
              |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 138348 cctttacattgagatcagtatgacgagagtatgacagatgaagcttacagtaacctccat 138407

                                                              
Query: 594    catatatgcaatgtccctccagagcttgtttagcaactcctgctgttg 641
              |||||||||| || || |||| |||||||||||||||| |||| ||||
Sbjct: 138408 catatatgcagtgcccttccaaagcttgtttagcaactgctgccgttg 138455



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                     
Query: 648    ctggatactgaatcagagcctgcattccaccattcttct 686
              ||||||| ||||| |  ||||||||||||||||||||||
Sbjct: 139337 ctggatattgaattaaggcctgcattccaccattcttct 139375



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                    
Query: 370    ctgcatgttaggattccaggttggcacttgtccgacag 407
              ||||||||| |||||||| | |||||||||||| ||||
Sbjct: 137908 ctgcatgtttggattccaagctggcacttgtccaacag 137945
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>gb|DQ222499.1| Solanum tuberosum clone 106A06 polypyrimidine tract-binding-like
            mRNA, complete cds
          Length = 1710

 Score =  115 bits (58), Expect = 2e-22
 Identities = 70/74 (94%)
 Strand = Plus / Minus

                                                                        
Query: 539  acattcagatcagtatgacgagagtatgacagatgaagcttacagtaaccaccatcatat 598
            ||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||
Sbjct: 1031 acattcagatcagtatgacgagagtatgatagatgaagcttacaatagccaccatcatat 972

                          
Query: 599  atgcaatgtccctc 612
            ||||| ||||||||
Sbjct: 971  atgcagtgtccctc 958
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>gb|DQ252520.1| Solanum tuberosum clone 103F01 polypyrimidine tract-binding
            protein-like mRNA, complete cds
          Length = 1721

 Score =  115 bits (58), Expect = 2e-22
 Identities = 70/74 (94%)
 Strand = Plus / Minus

                                                                        
Query: 539  acattcagatcagtatgacgagagtatgacagatgaagcttacagtaaccaccatcatat 598
            ||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||
Sbjct: 1022 acattcagatcagtatgacgagagtatgatagatgaagcttacaatagccaccatcatat 963

                          
Query: 599  atgcaatgtccctc 612
            ||||| ||||||||
Sbjct: 962  atgcagtgtccctc 949
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>gb|AC148485.10| Medicago truncatula clone mth2-46j5, complete sequence
          Length = 111045

 Score =  113 bits (57), Expect = 8e-22
 Identities = 75/81 (92%)
 Strand = Plus / Plus

                                                                         
Query: 534   ccttcacattcagatcagtatgacgagagtatgacagatgaagcttacagtaaccaccat 593
             |||| ||||| ||||||||||||||||||||||  |||||||||||||| || |||||||
Sbjct: 57987 ccttaacattgagatcagtatgacgagagtatgttagatgaagcttacaatagccaccat 58046

                                  
Query: 594   catatatgcaatgtccctcca 614
             |||||||||||||||||||||
Sbjct: 58047 catatatgcaatgtccctcca 58067
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>gb|AC122724.36| Medicago truncatula clone mth2-14m14, complete sequence
          Length = 122740

 Score =  113 bits (57), Expect = 8e-22
 Identities = 75/81 (92%)
 Strand = Plus / Minus

                                                                          
Query: 534    ccttcacattcagatcagtatgacgagagtatgacagatgaagcttacagtaaccaccat 593
              |||| ||||| ||||||||||||||||||||||  |||||||||||||| || |||||||
Sbjct: 115981 ccttaacattgagatcagtatgacgagagtatgttagatgaagcttacaatagccaccat 115922

                                   
Query: 594    catatatgcaatgtccctcca 614
              |||||||||||||||||||||
Sbjct: 115921 catatatgcaatgtccctcca 115901
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>gb|AC140033.3| Medicago truncatula clone mth2-24f11, complete sequence
          Length = 120384

 Score =  109 bits (55), Expect = 1e-20
 Identities = 73/79 (92%)
 Strand = Plus / Minus

                                                                         
Query: 534   ccttcacattcagatcagtatgacgagagtatgacagatgaagcttacagtaaccaccat 593
             |||| ||||| ||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct: 76398 cctttacattgagatcagtatgacgagagtatgatagatgaagcttacaatagccaccat 76339

                                
Query: 594   catatatgcaatgtccctc 612
             ||||||||||||| |||||
Sbjct: 76338 catatatgcaatgcccctc 76320
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>gb|AC140025.7| Medicago truncatula clone mth2-11i16, complete sequence
          Length = 130592

 Score =  109 bits (55), Expect = 1e-20
 Identities = 73/79 (92%)
 Strand = Plus / Minus

                                                                         
Query: 534   ccttcacattcagatcagtatgacgagagtatgacagatgaagcttacagtaaccaccat 593
             |||| ||||| ||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct: 25851 cctttacattgagatcagtatgacgagagtatgatagatgaagcttacaatagccaccat 25792

                                
Query: 594   catatatgcaatgtccctc 612
             ||||||||||||| |||||
Sbjct: 25791 catatatgcaatgcccctc 25773
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>dbj|AP004962.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT28H14, TM0141,
             complete sequence
          Length = 100810

 Score =  109 bits (55), Expect = 1e-20
 Identities = 73/79 (92%)
 Strand = Plus / Plus

                                                                         
Query: 534   ccttcacattcagatcagtatgacgagagtatgacagatgaagcttacagtaaccaccat 593
             |||||||||| ||||||||||||||||| ||||  |||||||||||||| || |||||||
Sbjct: 30355 ccttcacattgagatcagtatgacgagaatatgttagatgaagcttacaatagccaccat 30414

                                
Query: 594   catatatgcaatgtccctc 612
             |||||||||||||||||||
Sbjct: 30415 catatatgcaatgtccctc 30433
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>gb|AC008261.5|ATAC008261 Arabidopsis thaliana chromosome III BAC T4P13 genomic sequence,
             complete sequence
          Length = 93735

 Score =  107 bits (54), Expect = 5e-20
 Identities = 104/121 (85%)
 Strand = Plus / Plus

                                                                         
Query: 529   atgtgccttcacattcagatcagtatgacgagagtatgacagatgaagcttacagtaacc 588
             |||| |||| ||||||||||||||||||||||||||||| ||  ||||||||||||| ||
Sbjct: 43201 atgtaccttaacattcagatcagtatgacgagagtatgatagtcgaagcttacagtagcc 43260

                                                                         
Query: 589   accatcatatatgcaatgtccctccagagcttgtttagcaactcctgctgttgntatatc 648
             ||| ||||| ||||| ||||| ||||| |||| ||| || | | ||||||||| ||||||
Sbjct: 43261 accgtcataaatgcagtgtccttccagtgcttctttggccattgctgctgttggtatatc 43320

              
Query: 649   t 649
             |
Sbjct: 43321 t 43321
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>ref|NM_110980.2| Arabidopsis thaliana PTB (POLYPYRIMIDINE TRACT-BINDING); RNA binding
            / nucleic acid binding AT3G01150 (PTB) mRNA, complete cds
          Length = 1457

 Score =  105 bits (53), Expect = 2e-19
 Identities = 100/116 (86%)
 Strand = Plus / Minus

                                                                        
Query: 533  gccttcacattcagatcagtatgacgagagtatgacagatgaagcttacagtaaccacca 592
            ||||| ||||||||||||||||||||||||||||| ||  ||||||||||||| ||||| 
Sbjct: 1081 gccttaacattcagatcagtatgacgagagtatgatagtcgaagcttacagtagccaccg 1022

                                                                    
Query: 593  tcatatatgcaatgtccctccagagcttgtttagcaactcctgctgttgntatatc 648
            ||||| ||||| ||||| ||||| |||| ||| || | | ||||||||| ||||||
Sbjct: 1021 tcataaatgcagtgtccttccagtgcttctttggccattgctgctgttggtatatc 966
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>gb|AF076924.1|AF076924 Arabidopsis thaliana polypyrimidine tract-binding protein homolog
            (PTB) mRNA, complete cds
          Length = 1425

 Score =  105 bits (53), Expect = 2e-19
 Identities = 100/116 (86%)
 Strand = Plus / Minus

                                                                        
Query: 533  gccttcacattcagatcagtatgacgagagtatgacagatgaagcttacagtaaccacca 592
            ||||| ||||||||||||||||||||||||||||| ||  ||||||||||||| ||||| 
Sbjct: 1037 gccttaacattcagatcagtatgacgagagtatgatagtcgaagcttacagtagccaccg 978

                                                                    
Query: 593  tcatatatgcaatgtccctccagagcttgtttagcaactcctgctgttgntatatc 648
            ||||| ||||| ||||| ||||| |||| ||| || | | ||||||||| ||||||
Sbjct: 977  tcataaatgcagtgtccttccagtgcttctttggccattgctgctgttggtatatc 922
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>emb|BX825797.1|CNS0A7GJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTSIL62ZH11 of Silique of strain col-0 of Arabidopsis
            thaliana (thale cress)
          Length = 1433

 Score =  103 bits (52), Expect = 8e-19
 Identities = 99/115 (86%)
 Strand = Plus / Minus

                                                                        
Query: 534  ccttcacattcagatcagtatgacgagagtatgacagatgaagcttacagtaaccaccat 593
            |||| ||||||||||||||||||||||||||||| ||  ||||||||||||| ||||| |
Sbjct: 1063 ccttaacattcagatcagtatgacgagagtatgatagtcgaagcttacagtagccaccgt 1004

                                                                   
Query: 594  catatatgcaatgtccctccagagcttgtttagcaactcctgctgttgntatatc 648
            |||| ||||| ||||| ||||| |||| ||| || | | ||||||||| ||||||
Sbjct: 1003 cataaatgcagtgtccttccagtgcttctttggccattgctgctgttggtatatc 949
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>emb|BX822973.1|CNS0A5VG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB78ZB08 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1475

 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 99/116 (85%)
 Strand = Plus / Minus

                                                                        
Query: 533  gccttcacattcagatcagtatgacgagagtatgacagatgaagcttacagtaaccacca 592
            ||||| ||||||||||||||||||||||||||||| ||  ||||||||||||| ||||| 
Sbjct: 1139 gccttaacattcagatcagtatgacgagagtatgatagtcgaagcttacagtagccaccg 1080

                                                                    
Query: 593  tcatatatgcaatgtccctccagagcttgtttagcaactcctgctgttgntatatc 648
            ||||| ||||| ||||| |||||  ||| ||| || | | ||||||||| ||||||
Sbjct: 1079 tcataaatgcagtgtccttccagtacttctttggccattgctgctgttggtatatc 1024
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>ref|XM_470716.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1541

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 129/157 (82%)
 Strand = Plus / Minus

                                                                       
Query: 530 tgtgccttcacattcagatcagtatgacgagagtatgacagatgaagcttacagtaacca 589
           |||||||| ||||| ||||||||||||||||| |||||||| || ||||||||||| |||
Sbjct: 998 tgtgcctttacattgagatcagtatgacgagaatatgacaggtggagcttacagtagcca 939

                                                                       
Query: 590 ccatcatatatgcaatgtccctccagagcttgtttagcaactcctgctgttgntatatct 649
           ||||| || |||||||| || ||||  ||||  || ||||||   ||||| | || ||| 
Sbjct: 938 ccatcgtagatgcaatgcccttccaatgcttccttcgcaactgaagctgtagttacatca 879

                                                
Query: 650 ggatactgaatcagagcctgcattccaccattcttct 686
           || |||||||||| ||| ||  ||||||| |||||||
Sbjct: 878 gggtactgaatcaaagcttgtgttccaccgttcttct 842
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>dbj|AK101213.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033031B03, full
            insert sequence
          Length = 1748

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 129/157 (82%)
 Strand = Plus / Minus

                                                                        
Query: 530  tgtgccttcacattcagatcagtatgacgagagtatgacagatgaagcttacagtaacca 589
            |||||||| ||||| ||||||||||||||||| |||||||| || ||||||||||| |||
Sbjct: 1173 tgtgcctttacattgagatcagtatgacgagaatatgacaggtggagcttacagtagcca 1114

                                                                        
Query: 590  ccatcatatatgcaatgtccctccagagcttgtttagcaactcctgctgttgntatatct 649
            ||||| || |||||||| || ||||  ||||  || ||||||   ||||| | || ||| 
Sbjct: 1113 ccatcgtagatgcaatgcccttccaatgcttccttcgcaactgaagctgtagttacatca 1054

                                                 
Query: 650  ggatactgaatcagagcctgcattccaccattcttct 686
            || |||||||||| ||| ||  ||||||| |||||||
Sbjct: 1053 gggtactgaatcaaagcttgtgttccaccgttcttct 1017
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>dbj|AK062562.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-E01, full
            insert sequence
          Length = 1672

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 129/157 (82%)
 Strand = Plus / Minus

                                                                        
Query: 530  tgtgccttcacattcagatcagtatgacgagagtatgacagatgaagcttacagtaacca 589
            |||||||| ||||| ||||||||||||||||| |||||||| || ||||||||||| |||
Sbjct: 1128 tgtgcctttacattgagatcagtatgacgagaatatgacaggtggagcttacagtagcca 1069

                                                                        
Query: 590  ccatcatatatgcaatgtccctccagagcttgtttagcaactcctgctgttgntatatct 649
            ||||| || |||||||| || ||||  ||||  || ||||||   ||||| | || ||| 
Sbjct: 1068 ccatcgtagatgcaatgcccttccaatgcttccttcgcaactgaagctgtagttacatca 1009

                                                 
Query: 650  ggatactgaatcagagcctgcattccaccattcttct 686
            || |||||||||| ||| ||  ||||||| |||||||
Sbjct: 1008 gggtactgaatcaaagcttgtgttccaccgttcttct 972
to top
>emb|BX822327.1|CNS0A60G Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB29ZE06 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1407

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 98/116 (84%)
 Strand = Plus / Minus

                                                                        
Query: 533  gccttcacattcagatcagtatgacgagagtatgacagatgaagcttacagtaaccacca 592
            ||||| ||||||||||||||||||||||||||||| ||  ||||||||||||| ||||| 
Sbjct: 1072 gccttaacattcagatcagtatgacgagagtatgatagtcgaagcttacagtagccaccg 1013

                                                                    
Query: 593  tcatatatgcaatgtccctccagagcttgtttagcaactcctgctgttgntatatc 648
            ||||| ||||| | ||| ||||| |||| ||| || | | ||||||| | ||||||
Sbjct: 1012 tcataaatgcagtttccttccagtgcttctttggccattgctgctgtgggtatatc 957
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 65/73 (89%)
 Strand = Plus / Minus

                                                                            
Query: 534      ccttcacattcagatcagtatgacgagagtatgacagatgaagcttacagtaaccaccat 593
                |||| ||||| ||||||||||||||||| |||||||| || ||||||||||| |||||||
Sbjct: 14721029 cctttacattgagatcagtatgacgagaatatgacaggtggagcttacagtagccaccat 14720970

                             
Query: 594      catatatgcaatg 606
                | || ||||||||
Sbjct: 14720969 cgtagatgcaatg 14720957
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>gb|AC084766.8| Oryza sativa chromosome 3 BAC OSJNBb0048D20 genomic sequence, complete
             sequence
          Length = 130306

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 65/73 (89%)
 Strand = Plus / Minus

                                                                         
Query: 534   ccttcacattcagatcagtatgacgagagtatgacagatgaagcttacagtaaccaccat 593
             |||| ||||| ||||||||||||||||| |||||||| || ||||||||||| |||||||
Sbjct: 59941 cctttacattgagatcagtatgacgagaatatgacaggtggagcttacagtagccaccat 59882

                          
Query: 594   catatatgcaatg 606
             | || ||||||||
Sbjct: 59881 cgtagatgcaatg 59869
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 65/73 (89%)
 Strand = Plus / Minus

                                                                            
Query: 534      ccttcacattcagatcagtatgacgagagtatgacagatgaagcttacagtaaccaccat 593
                |||| ||||| ||||||||||||||||| |||||||| || ||||||||||| |||||||
Sbjct: 14715563 cctttacattgagatcagtatgacgagaatatgacaggtggagcttacagtagccaccat 14715504

                             
Query: 594      catatatgcaatg 606
                | || ||||||||
Sbjct: 14715503 cgtagatgcaatg 14715491
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>dbj|AP003472.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB173C10, complete
             sequence
          Length = 103804

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 653   tactgaatcagagcctgcattc 674
             ||||||||||||||||||||||
Sbjct: 70601 tactgaatcagagcctgcattc 70622
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>dbj|AP000424.3| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1615E4
          Length = 177274

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 653  tactgaatcagagcctgcattc 674
            ||||||||||||||||||||||
Sbjct: 3111 tactgaatcagagcctgcattc 3132
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>gb|AC069503.25| Homo sapiens 12 BAC RP11-87C12 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 186580

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 585   aaccaccatcatatatgcaat 605
             |||||||||||||||||||||
Sbjct: 80446 aaccaccatcatatatgcaat 80426
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>emb|AL731549.11| Human DNA sequence from clone RP11-113I9 on chromosome 10 Contains part
             of the gene for alpha-catenin-like protein (MGC26194)
             (VR22), complete sequence
          Length = 81853

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 653   tactgaatcagagcctgcatt 673
             |||||||||||||||||||||
Sbjct: 32751 tactgaatcagagcctgcatt 32771
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>emb|AL157814.14| Human DNA sequence from clone RP11-285E18 on chromosome 13q22.1-22.3
             Contains a novel gene, complete sequence
          Length = 111350

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 653   tactgaatcagagcctgcatt 673
             |||||||||||||||||||||
Sbjct: 85308 tactgaatcagagcctgcatt 85328
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>gb|AC110795.4| Homo sapiens BAC clone RP11-628A4 from 4, complete sequence
          Length = 75296

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 653   tactgaatcagagcctgcatt 673
             |||||||||||||||||||||
Sbjct: 29219 tactgaatcagagcctgcatt 29199
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>gb|AC021017.4|AC021017 Homo sapiens BAC clone RP11-382E10 from 8, complete sequence
          Length = 182988

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 205   aggcagagcagcaggggctgt 225
             |||||||||||||||||||||
Sbjct: 52894 aggcagagcagcaggggctgt 52874
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>gb|AC154656.2| Mus musculus BAC clone RP24-268M5 from chromosome 16, complete sequence
          Length = 166376

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 534    ccttcacattcagatcagtat 554
              |||||||||||||||||||||
Sbjct: 129736 ccttcacattcagatcagtat 129716
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>gb|AC079250.7| Homo sapiens BAC clone RP11-62I18 from 2, complete sequence
          Length = 82938

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 653   tactgaatcagagcctgcatt 673
             |||||||||||||||||||||
Sbjct: 42811 tactgaatcagagcctgcatt 42791
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>emb|AL935195.14| Zebrafish DNA sequence from clone CH211-277C7 in linkage group 14,
              complete sequence
          Length = 194053

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 576    gcttacagtaaccaccatcat 596
              |||||||||||||||||||||
Sbjct: 123152 gcttacagtaaccaccatcat 123172
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>dbj|AP002992.4| Homo sapiens genomic DNA, chromosome 11 clone:CTD-2655K5, complete
              sequence
          Length = 191589

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 653    tactgaatcagagcctgcatt 673
              |||||||||||||||||||||
Sbjct: 110591 tactgaatcagagcctgcatt 110611
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>dbj|AP002813.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-856M9, complete
             sequence
          Length = 187516

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 653   tactgaatcagagcctgcatt 673
             |||||||||||||||||||||
Sbjct: 48364 tactgaatcagagcctgcatt 48384
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>gb|BT020199.1| Arabidopsis thaliana At5g53180 mRNA, complete cds
          Length = 1290

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 575 agcttacagtaaccaccatcatatatgcaatgtccctcca 614
           ||||||||  |||||||||| || || |||||||||||||
Sbjct: 947 agcttacaaaaaccaccatcgtagatacaatgtccctcca 908
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>gb|AC163349.3| Mus musculus BAC clone RP23-188F5 from chromosome 3, complete sequence
          Length = 226848

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 234    gtgccatctgttgtgaagcttggt 257
              ||||||||||||| ||||||||||
Sbjct: 210299 gtgccatctgttgggaagcttggt 210322
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>gb|BT015760.1| Arabidopsis thaliana At5g53180 mRNA, complete cds
          Length = 1392

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 575  agcttacagtaaccaccatcatatatgcaatgtccctcca 614
            ||||||||  |||||||||| || || |||||||||||||
Sbjct: 1010 agcttacaaaaaccaccatcgtagatacaatgtccctcca 971
to top
>gb|AY578717.1| Rivulus lyricauda tRNA-Ile gene, partial sequence; tRNA-Gln and
           tRNA-Met genes, complete sequence; NADH dehydrogenase
           subunit 2 gene, complete cds; tRNA-Trp, tRNA-Ala,
           tRNA-Asn, tRNA-Cys, and tRNA-Tyr genes, complete
           sequence; and cytochrome oxidase subunit I gene, partial
           cds; mitochondrial
          Length = 1617

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 165 gaatagctcattttgggaag 184
           ||||||||||||||||||||
Sbjct: 960 gaatagctcattttgggaag 941
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>ref|NM_001039195.1| Mus musculus glutamate receptor, ionotropic, AMPA2 (alpha 2)
           (Gria2), mRNA
          Length = 3491

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 234 gtgccatctgttgtgaagcttggt 257
           ||||||||||||| ||||||||||
Sbjct: 769 gtgccatctgttgggaagcttggt 746
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>ref|NM_013540.2| Mus musculus glutamate receptor, ionotropic, AMPA2 (alpha 2)
           (Gria2), mRNA
          Length = 6841

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 234 gtgccatctgttgtgaagcttggt 257
           ||||||||||||| ||||||||||
Sbjct: 769 gtgccatctgttgggaagcttggt 746
to top
>gb|BC053509.1| Homo sapiens 5,10-methylenetetrahydrofolate reductase (NADPH), mRNA
            (cDNA clone MGC:59799 IMAGE:6374885), complete cds
          Length = 6099

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 432  aaaaaccagcaggtgtggtg 451
            ||||||||||||||||||||
Sbjct: 5950 aaaaaccagcaggtgtggtg 5969
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>ref|NM_005957.3| Homo sapiens 5,10-methylenetetrahydrofolate reductase (NADPH)
            (MTHFR), mRNA
          Length = 7105

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 432  aaaaaccagcaggtgtggtg 451
            ||||||||||||||||||||
Sbjct: 6083 aaaaaccagcaggtgtggtg 6102
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>gb|BC044524.1| Danio rerio sb:cb825, mRNA (cDNA clone IMAGE:3818635), partial cds
          Length = 1621

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 169 agctcattttgggaagtacattgg 192
           |||| |||||||||||||||||||
Sbjct: 540 agctgattttgggaagtacattgg 563
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>gb|BC066193.1| Mus musculus glutamate receptor, ionotropic, AMPA2 (alpha 2), mRNA
           (cDNA clone IMAGE:30102011), containing frame-shift
           errors
          Length = 3679

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 234 gtgccatctgttgtgaagcttggt 257
           ||||||||||||| ||||||||||
Sbjct: 557 gtgccatctgttgggaagcttggt 534
to top
>gb|BC018766.1| Homo sapiens 5,10-methylenetetrahydrofolate reductase (NADPH), mRNA
            (cDNA clone IMAGE:4299889), complete cds
          Length = 1363

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 432  aaaaaccagcaggtgtggtg 451
            ||||||||||||||||||||
Sbjct: 1215 aaaaaccagcaggtgtggtg 1234
to top
>gb|BC011614.2| Homo sapiens 5,10-methylenetetrahydrofolate reductase (NADPH), mRNA
            (cDNA clone IMAGE:3949285), partial cds
          Length = 1737

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 432  aaaaaccagcaggtgtggtg 451
            ||||||||||||||||||||
Sbjct: 1022 aaaaaccagcaggtgtggtg 1041
to top
>gb|AF398933.1| Homo sapiens methylenetetrahydrofolate reductase (MTHFR) gene, 3' UTR
          Length = 4948

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 432  aaaaaccagcaggtgtggtg 451
            ||||||||||||||||||||
Sbjct: 3928 aaaaaccagcaggtgtggtg 3947
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>emb|AJ243941.1|PSP243941 Pseudomonas sp. strain HR199 partial vanB, fdh, gcs, ehyA and ehyB
            genes
          Length = 6500

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 200  gcatgaggcagagcagcagg 219
            ||||||||||||||||||||
Sbjct: 6085 gcatgaggcagagcagcagg 6104
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>gb|AC099609.8| Mus musculus chromosome 7, clone RP23-376D24, complete sequence
          Length = 226284

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   gcatgaggcagagcagcagg 219
             ||||||||||||||||||||
Sbjct: 21646 gcatgaggcagagcagcagg 21665
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>gb|AC111035.8| Mus musculus chromosome 3, clone RP24-507N18, complete sequence
          Length = 147759

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 234   gtgccatctgttgtgaagcttggt 257
             ||||||||||||| ||||||||||
Sbjct: 99468 gtgccatctgttgggaagcttggt 99491
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>emb|Z96074.4|HS399M14 Human DNA sequence from clone RP3-399M14 on chromosome Xq26.1-26.3,
             complete sequence
          Length = 155661

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 569   agatgaagcttacagtaaccaccatcatatat 600
             |||||||||||| ||||| ||| |||||||||
Sbjct: 34534 agatgaagcttaaagtaagcacgatcatatat 34503
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>emb|AL953897.6| Human DNA sequence from clone RP11-56N19 on chromosome 1 Contains the
             3' end of a novel gene, the AGTRAP gene for angiotensin II
             receptor-associated protein, two novel genes, the MTHFR
             gene for 5,10-methylenetetrahydrofolate reductase (NADPH),
             the 5' end of the CLCN6 gene for chloride channel 6 and a
             CpG island, complete sequence
          Length = 102509

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 432   aaaaaccagcaggtgtggtg 451
             ||||||||||||||||||||
Sbjct: 72776 aaaaaccagcaggtgtggtg 72757
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>emb|AL365190.16| Human DNA sequence from clone RP11-512H14 on chromosome 9 Contains
            the 5' end of the TLE1 gene for transducin-like enhancer
            of split 1 (E(sp1) homolog, Drosophila) (ESG, GRG1), the
            5' end of a novel gene and two CpG isalnds, complete
            sequence
          Length = 89468

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 586  accaccatcatatatgcaat 605
            ||||||||||||||||||||
Sbjct: 3494 accaccatcatatatgcaat 3513
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>emb|AL035668.15|HS859D4 Human DNA sequence from clone RP5-859D4 on chromosome 20p12.1-13 Contains
              the BMP2 gene for bone morphogenetic protein 2, a novel
              gene and a CpG island, complete sequence
          Length = 173308

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 653    tactgaatcagagcctgcat 672
              ||||||||||||||||||||
Sbjct: 128638 tactgaatcagagcctgcat 128657
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>emb|X57498.1|MMGLUR2 M.musculus mRNA for glutamate receptor 2
          Length = 3125

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 234 gtgccatctgttgtgaagcttggt 257
           ||||||||||||| ||||||||||
Sbjct: 564 gtgccatctgttgggaagcttggt 541
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>gb|AC109583.2| Homo sapiens chromosome 3 clone RP11-427P5, complete sequence
          Length = 177251

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 432  aaaaaccagcaggtgtggtg 451
            ||||||||||||||||||||
Sbjct: 4978 aaaaaccagcaggtgtggtg 4997
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>gb|AC022716.13| Homo sapiens chromosome 8, clone RP11-135I5, complete sequence
          Length = 163495

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 586   accaccatcatatatgcaat 605
             ||||||||||||||||||||
Sbjct: 40720 accaccatcatatatgcaat 40739
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>dbj|AK134772.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length
           enriched library, clone:6330555N22 product:glutamate
           receptor, ionotropic, AMPA2 (alpha 2), full insert
           sequence
          Length = 3554

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 234 gtgccatctgttgtgaagcttggt 257
           ||||||||||||| ||||||||||
Sbjct: 340 gtgccatctgttgggaagcttggt 317
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>gb|AC007923.7| Homo sapiens chromosome 17, clone RP11-805L22, complete sequence
          Length = 180270

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 654   actgaatcagagcctgcatt 673
             ||||||||||||||||||||
Sbjct: 41362 actgaatcagagcctgcatt 41343
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>gb|AC084209.6| Homo sapiens BAC clone RP11-462C24 from 4, complete sequence
          Length = 151980

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 586   accaccatcatatatgcaat 605
             ||||||||||||||||||||
Sbjct: 11919 accaccatcatatatgcaat 11938
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>dbj|AK134647.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length
           enriched library, clone:6330512I20 product:glutamate
           receptor, ionotropic, AMPA2 (alpha 2), full insert
           sequence
          Length = 3036

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 234 gtgccatctgttgtgaagcttggt 257
           ||||||||||||| ||||||||||
Sbjct: 215 gtgccatctgttgggaagcttggt 192
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>dbj|AK134572.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length
           enriched library, clone:6330416L02 product:glutamate
           receptor, ionotropic, AMPA2 (alpha 2), full insert
           sequence
          Length = 3630

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 234 gtgccatctgttgtgaagcttggt 257
           ||||||||||||| ||||||||||
Sbjct: 700 gtgccatctgttgggaagcttggt 677
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>gb|AC021242.10| Homo sapiens chromosome 8, clone RP11-375N15, complete sequence
          Length = 196152

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 667    ctgcattccaccattcttct 686
              ||||||||||||||||||||
Sbjct: 131765 ctgcattccaccattcttct 131784
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>dbj|AK141525.1| Mus musculus adult male hippocampus cDNA, RIKEN full-length
           enriched library, clone:C630004I22 product:glutamate
           receptor, ionotropic, AMPA2 (alpha 2), full insert
           sequence
          Length = 3675

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 234 gtgccatctgttgtgaagcttggt 257
           ||||||||||||| ||||||||||
Sbjct: 744 gtgccatctgttgggaagcttggt 721
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>gb|AC106821.2| Homo sapiens chromosome 5 clone RP11-730N24, complete sequence
          Length = 151355

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 586    accaccatcatatatgcaat 605
              ||||||||||||||||||||
Sbjct: 104297 accaccatcatatatgcaat 104278
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>dbj|AK163941.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:C230080H02 product:glutamate
           receptor, ionotropic, AMPA2 (alpha 2), full insert
           sequence
          Length = 1979

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 234 gtgccatctgttgtgaagcttggt 257
           ||||||||||||| ||||||||||
Sbjct: 762 gtgccatctgttgggaagcttggt 739
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>dbj|AK046861.1| Mus musculus 10 days neonate medulla oblongata cDNA, RIKEN
           full-length enriched library, clone:B830034M19
           product:glutamate receptor, ionotropic, AMPA2 (alpha 2),
           full insert sequence
          Length = 3463

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 234 gtgccatctgttgtgaagcttggt 257
           ||||||||||||| ||||||||||
Sbjct: 769 gtgccatctgttgggaagcttggt 746
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>gb|AC158545.2| Mus musculus 10 BAC RP24-401G4 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 203847

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 538    cacattcagatcagtatgac 557
              ||||||||||||||||||||
Sbjct: 133434 cacattcagatcagtatgac 133415
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>dbj|AK086614.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched
           library, clone:D930041G16 product:glutamate receptor,
           ionotropic, AMPA2 (alpha 2), full insert sequence
          Length = 2720

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 234 gtgccatctgttgtgaagcttggt 257
           ||||||||||||| ||||||||||
Sbjct: 703 gtgccatctgttgggaagcttggt 680
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>dbj|AK044574.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library,
           clone:A930024H12 product:glutamate receptor, ionotropic,
           AMPA2 (alpha 2), full insert sequence
          Length = 3436

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 234 gtgccatctgttgtgaagcttggt 257
           ||||||||||||| ||||||||||
Sbjct: 701 gtgccatctgttgggaagcttggt 678
to top
>dbj|AK043490.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:A730099J24 product:glutamate
           receptor, ionotropic, AMPA2 (alpha 2), full insert
           sequence
          Length = 3465

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 234 gtgccatctgttgtgaagcttggt 257
           ||||||||||||| ||||||||||
Sbjct: 742 gtgccatctgttgggaagcttggt 719
to top
>dbj|AK014389.1| Mus musculus adult male brain cDNA, RIKEN full-length enriched
           library, clone:3526401L07 product:glutamate receptor,
           ionotropic, AMPA2 (alpha 2), full insert sequence
          Length = 3506

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 234 gtgccatctgttgtgaagcttggt 257
           ||||||||||||| ||||||||||
Sbjct: 814 gtgccatctgttgggaagcttggt 791
to top
>dbj|AB111957.1| Mus musculus glur-2 mRNA for AMPA-selective glutamate receptor 2
           flip type, complete cds
          Length = 2652

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 234 gtgccatctgttgtgaagcttggt 257
           ||||||||||||| ||||||||||
Sbjct: 362 gtgccatctgttgggaagcttggt 339
to top
>gb|AF260233.1|AF260233 Homo sapiens methylenetetrahydrofolate reductase (MTHFR) gene, exon
            11 and 3' UTR, alternatively spliced
          Length = 5069

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 432  aaaaaccagcaggtgtggtg 451
            ||||||||||||||||||||
Sbjct: 3935 aaaaaccagcaggtgtggtg 3954
to top
>gb|AC084451.1|AC084451 Caenorhabditis briggsae cosmid CB023N02, complete sequence
          Length = 79813

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 282   ttgatccgatcactggaaag 301
             ||||||||||||||||||||
Sbjct: 77405 ttgatccgatcactggaaag 77386
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>gb|AC079905.28| Homo sapiens 12 BAC RP11-813P10 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 189456

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 586   accaccatcatatatgcaat 605
             ||||||||||||||||||||
Sbjct: 22084 accaccatcatatatgcaat 22103
to top
>gb|AC007340.8| Homo sapiens chromosome 16 clone RP11-358O5, complete sequence
          Length = 172833

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 586   accaccatcatatatgcaat 605
             ||||||||||||||||||||
Sbjct: 48291 accaccatcatatatgcaat 48272
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>gb|AC099627.10| Mus musculus chromosome 7, clone RP24-69E5, complete sequence
          Length = 244051

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 200  gcatgaggcagagcagcagg 219
            ||||||||||||||||||||
Sbjct: 2001 gcatgaggcagagcagcagg 1982
to top
>gb|BC048248.1| Mus musculus glutamate receptor, ionotropic, AMPA2 (alpha 2), mRNA
           (cDNA clone MGC:54603 IMAGE:6494013), complete cds
          Length = 4799

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 234 gtgccatctgttgtgaagcttggt 257
           ||||||||||||| ||||||||||
Sbjct: 628 gtgccatctgttgggaagcttggt 605
to top
>gb|AF040249.1|AF040249 Homo sapiens bone morphogenetic protein 2 (BMP-2) gene, complete cds
          Length = 16133

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 653   tactgaatcagagcctgcat 672
             ||||||||||||||||||||
Sbjct: 11076 tactgaatcagagcctgcat 11095
to top
>gb|AF129404.1|AF129404 Buchnera aphidicola natural-host Melaphis rhois alpha subunit of
            membrane-bound ATP synthase (atpA) gene, partial cds;
            gamma subunit of membrane-bound ATP synthase (atpG) gene,
            complete cds; and beta subunit of membrane-bound ATP
            synthase (atpD) gene, partial cds
          Length = 2056

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 95   cttacaatgcagttccaaaa 114
            ||||||||||||||||||||
Sbjct: 1671 cttacaatgcagttccaaaa 1690
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>gb|AC161468.2| Gallus gallus BAC clone CH261-94J19 from chromosome unknown, complete
              sequence
          Length = 238361

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 221    gctgtgccatattgtgccat 240
              ||||||||||||||||||||
Sbjct: 160610 gctgtgccatattgtgccat 160591
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>gb|AC164569.3| Gallus gallus BAC clone CH261-138K23 from chromosome unknown, complete
              sequence
          Length = 248284

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 221    gctgtgccatattgtgccat 240
              ||||||||||||||||||||
Sbjct: 229616 gctgtgccatattgtgccat 229635
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>gb|L32191.1|MUSGLURB03 Mus musculus AMPA receptor subunit (GluR-B) gene, exon 3
          Length = 240

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 234 gtgccatctgttgtgaagcttggt 257
           ||||||||||||| ||||||||||
Sbjct: 133 gtgccatctgttgggaagcttggt 110
to top
>dbj|AB209113.1| Homo sapiens mRNA for 5,10-methylenetetrahydrofolate reductase
            (NADPH) variant protein
          Length = 5953

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 432  aaaaaccagcaggtgtggtg 451
            ||||||||||||||||||||
Sbjct: 4928 aaaaaccagcaggtgtggtg 4947
to top
>gb|AC131263.6| Homo sapiens chromosome 11, clone RP11-348A11, complete sequence
          Length = 179568

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 652   atactgaatcagagcctgca 671
             ||||||||||||||||||||
Sbjct: 10472 atactgaatcagagcctgca 10453


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,736,327
Number of Sequences: 3902068
Number of extensions: 5736327
Number of successful extensions: 98679
Number of sequences better than 10.0: 90
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98444
Number of HSP's gapped (non-prelim): 235
length of query: 686
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 663
effective length of database: 17,143,297,704
effective search space: 11366006377752
effective search space used: 11366006377752
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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