ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags37g21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CHIT1_TULBA (Q9SLP4) Chitinase 1 precursor (EC 3.2.1.14) (Tulip ... 106 5e-23
2CHIT2_TULBA (Q7M443) Chitinase 2 (EC 3.2.1.14) (Tulip bulb chiti... 100 5e-21
3RL25_ANAMM (Q5P9A5) 50S ribosomal protein L25 (General stress pr... 31 3.6
4DDC_HUMAN (P20711) Aromatic-L-amino-acid decarboxylase (EC 4.1.1... 31 3.6

>CHIT1_TULBA (Q9SLP4) Chitinase 1 precursor (EC 3.2.1.14) (Tulip bulb|
           chitinase-1) (TBC-1)
          Length = 314

 Score =  106 bits (265), Expect = 5e-23
 Identities = 57/113 (50%), Positives = 75/113 (66%), Gaps = 1/113 (0%)
 Frame = -3

Query: 602 YYQPLWRKYSGVIDYVNFQFYGYGANTNVEYYMQFYNEQARNYPGSGGSKLLASFKTGDV 423
           +YQ LW KY   IDYVNFQFY Y A T+VE +++++ EQ+ NY    G K+L SF T D 
Sbjct: 193 HYQALWEKYGHQIDYVNFQFYAYSARTSVEQFLKYFEEQSSNY---HGGKVLVSFST-DS 248

Query: 422 TGLLSPDQG-ISAAKELQRQGKLPGIFIFSADSSKKSPYGFKYETQAQQIVAN 267
           +G L PD G   A   L++QGKL GIF++SAD S  S   F+YE QAQ ++A+
Sbjct: 249 SGGLKPDNGFFRACSILKKQGKLHGIFVWSADDSLMSNNVFRYEMQAQSMLAS 301



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>CHIT2_TULBA (Q7M443) Chitinase 2 (EC 3.2.1.14) (Tulip bulb chitinase-2) (TBC-2)|
          Length = 275

 Score =  100 bits (248), Expect = 5e-21
 Identities = 52/112 (46%), Positives = 70/112 (62%)
 Frame = -3

Query: 602 YYQPLWRKYSGVIDYVNFQFYGYGANTNVEYYMQFYNEQARNYPGSGGSKLLASFKTGDV 423
           +YQ LW KY   IDYVNFQFY Y +  +VE +++++  Q  NYP   G K+L SF T + 
Sbjct: 167 HYQALWEKYGHQIDYVNFQFYVYSSRMSVEQFLKYFEMQRSNYP---GGKVLVSFSTDNS 223

Query: 422 TGLLSPDQGISAAKELQRQGKLPGIFIFSADSSKKSPYGFKYETQAQQIVAN 267
            GL   +    A   L++QGKL GIF++SAD S  S   FKYE QAQ ++A+
Sbjct: 224 GGLKPRNGFFDACSILKKQGKLHGIFVWSADDSLMSNDVFKYEMQAQSLLAS 275



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>RL25_ANAMM (Q5P9A5) 50S ribosomal protein L25 (General stress protein CTC)|
          Length = 218

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 575 SGVIDYVNFQFYGYGANTNVEYYMQFYNEQ 486
           SG + +V+FQF   GA   VE  + F NEQ
Sbjct: 88  SGAVSHVDFQFVDRGAEIKVEVPLVFLNEQ 117



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>DDC_HUMAN (P20711) Aromatic-L-amino-acid decarboxylase (EC 4.1.1.28) (AADC)|
           (DOPA decarboxylase) (DDC)
          Length = 480

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +2

Query: 101 SRVPHRCLFKLEYVHDIYLVPVHIRDTWRFVRIYAVCSKVV 223
           ++V    L ++     I+LVP H+RD  +FV  +A+CS+ V
Sbjct: 417 NKVNEALLQRINSAKKIHLVPCHLRD--KFVLRFAICSRTV 455


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,063,762
Number of Sequences: 219361
Number of extensions: 1504995
Number of successful extensions: 5297
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5294
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6143359464
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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