| Clone Name | rbags37g21 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_196498.1| Oryza sativa (japonica cultivar-group) putative class III chitinase (OSJNBa0032I20.10), mRNA Length = 861 Score = 123 bits (62), Expect = 8e-25 Identities = 161/194 (82%) Strand = Plus / Minus Query: 263 agtggttggcgacgatctgctgcgcctgggtctcatacttaaacccgtaggggctctttt 322 |||||||||||||||||| ||| |||| |||||| |||| |||| |||| ||| Sbjct: 859 agtggttggcgacgatctcctgagccttggtctcgtactcaaacttgtagctgctgacca 800 Query: 323 tagagctatccgctgagaagatgaagatccccggcagcttgccctgccgctggagctcct 382 | |||||||||||||| ||||||| | |||||||||||| ||||||||||| | ||||| Sbjct: 799 tggagctatccgctgaccagatgaacaaccccggcagcttcccctgccgctgcaactcct 740 Query: 383 tggccgcgctgatcccttgatccggcgagagcaggccggtgacgtcgccggtcttgaagc 442 | || || |||||| || |||||||||||||| |||||||||| ||||||||||||| Sbjct: 739 tcgcgccggcgatcccctgctccggcgagagcagcccggtgacgttcccggtcttgaagc 680 Query: 443 tggcgagcaacttg 456 ||||||||| |||| Sbjct: 679 tggcgagcagcttg 666 Score = 91.7 bits (46), Expect = 3e-15 Identities = 76/86 (88%) Strand = Plus / Minus Query: 517 acgttggtgttggcgccgtagccgtagaactggaagttgacatagtcgatgacgccggag 576 |||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||| | Sbjct: 614 acgtcggtgttggcgccgtagccgtagaactggaagttgacgtagtcgatcacgccggcg 555 Query: 577 tacttcctccagagaggctggtagta 602 || || ||| || ||||||||||| Sbjct: 554 tagcgccgccacagcggctggtagta 529
>gb|AC016780.6| Genomic Sequence For Oryza sativa (japonica cultivar-group) cultivar Nipponbare Clone OSJNBa0061K21 From Chromosome 10, complete sequence Length = 112721 Score = 123 bits (62), Expect = 8e-25 Identities = 161/194 (82%) Strand = Plus / Minus Query: 263 agtggttggcgacgatctgctgcgcctgggtctcatacttaaacccgtaggggctctttt 322 |||||||||||||||||| ||| |||| |||||| |||| |||| |||| ||| Sbjct: 16425 agtggttggcgacgatctcctgagccttggtctcgtactcaaacttgtagctgctgacca 16366 Query: 323 tagagctatccgctgagaagatgaagatccccggcagcttgccctgccgctggagctcct 382 | |||||||||||||| ||||||| | |||||||||||| ||||||||||| | ||||| Sbjct: 16365 tggagctatccgctgaccagatgaacaaccccggcagcttcccctgccgctgcaactcct 16306 Query: 383 tggccgcgctgatcccttgatccggcgagagcaggccggtgacgtcgccggtcttgaagc 442 | || || |||||| || |||||||||||||| |||||||||| ||||||||||||| Sbjct: 16305 tcgcgccggcgatcccctgctccggcgagagcagcccggtgacgttcccggtcttgaagc 16246 Query: 443 tggcgagcaacttg 456 ||||||||| |||| Sbjct: 16245 tggcgagcagcttg 16232 Score = 97.6 bits (49), Expect = 4e-17 Identities = 91/105 (86%) Strand = Plus / Minus Query: 352 cccggcagcttgccctgccgctggagctccttggccgcgctgatcccttgatccggcgag 411 ||||||||||| ||||||||||| | |||||| || || |||||| || |||||| || Sbjct: 28788 cccggcagcttcccctgccgctgcaactccttcgctccggcgatcccctgctccggccag 28729 Query: 412 agcaggccggtgacgtcgccggtcttgaagctggcgagcaacttg 456 ||||| |||| ||||||||||||||||||||||||||||| |||| Sbjct: 28728 agcagcccggcgacgtcgccggtcttgaagctggcgagcaccttg 28684 Score = 91.7 bits (46), Expect = 3e-15 Identities = 76/86 (88%) Strand = Plus / Minus Query: 517 acgttggtgttggcgccgtagccgtagaactggaagttgacatagtcgatgacgccggag 576 |||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||| | Sbjct: 16180 acgtcggtgttggcgccgtagccgtagaactggaagttgacgtagtcgatcacgccggcg 16121 Query: 577 tacttcctccagagaggctggtagta 602 || || ||| || ||||||||||| Sbjct: 16120 tagcgccgccacagcggctggtagta 16095 Score = 67.9 bits (34), Expect = 4e-08 Identities = 73/86 (84%) Strand = Plus / Minus Query: 517 acgttggtgttggcgccgtagccgtagaactggaagttgacatagtcgatgacgccggag 576 |||| ||||||| |||||||||||||||||||||||||||| |||||| ||||||| | Sbjct: 28632 acgtcggtgttgtcgccgtagccgtagaactggaagttgacgaggtcgatcacgccggcg 28573 Query: 577 tacttcctccagagaggctggtagta 602 || || ||| || ||||||||||| Sbjct: 28572 tagcgccgccacagcggctggtagta 28547
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 123 bits (62), Expect = 8e-25 Identities = 161/194 (82%) Strand = Plus / Minus Query: 263 agtggttggcgacgatctgctgcgcctgggtctcatacttaaacccgtaggggctctttt 322 |||||||||||||||||| ||| |||| |||||| |||| |||| |||| ||| Sbjct: 14076787 agtggttggcgacgatctcctgagccttggtctcgtactcaaacttgtagctgctgacca 14076728 Query: 323 tagagctatccgctgagaagatgaagatccccggcagcttgccctgccgctggagctcct 382 | |||||||||||||| ||||||| | |||||||||||| ||||||||||| | ||||| Sbjct: 14076727 tggagctatccgctgaccagatgaacaaccccggcagcttcccctgccgctgcaactcct 14076668 Query: 383 tggccgcgctgatcccttgatccggcgagagcaggccggtgacgtcgccggtcttgaagc 442 | || || |||||| || |||||||||||||| |||||||||| ||||||||||||| Sbjct: 14076667 tcgcgccggcgatcccctgctccggcgagagcagcccggtgacgttcccggtcttgaagc 14076608 Query: 443 tggcgagcaacttg 456 ||||||||| |||| Sbjct: 14076607 tggcgagcagcttg 14076594 Score = 97.6 bits (49), Expect = 4e-17 Identities = 91/105 (86%) Strand = Plus / Minus Query: 352 cccggcagcttgccctgccgctggagctccttggccgcgctgatcccttgatccggcgag 411 ||||||||||| ||||||||||| | |||||| || || |||||| || |||||| || Sbjct: 14089150 cccggcagcttcccctgccgctgcaactccttcgctccggcgatcccctgctccggccag 14089091 Query: 412 agcaggccggtgacgtcgccggtcttgaagctggcgagcaacttg 456 ||||| |||| ||||||||||||||||||||||||||||| |||| Sbjct: 14089090 agcagcccggcgacgtcgccggtcttgaagctggcgagcaccttg 14089046 Score = 91.7 bits (46), Expect = 3e-15 Identities = 76/86 (88%) Strand = Plus / Minus Query: 517 acgttggtgttggcgccgtagccgtagaactggaagttgacatagtcgatgacgccggag 576 |||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||| | Sbjct: 14076542 acgtcggtgttggcgccgtagccgtagaactggaagttgacgtagtcgatcacgccggcg 14076483 Query: 577 tacttcctccagagaggctggtagta 602 || || ||| || ||||||||||| Sbjct: 14076482 tagcgccgccacagcggctggtagta 14076457 Score = 67.9 bits (34), Expect = 4e-08 Identities = 73/86 (84%) Strand = Plus / Minus Query: 517 acgttggtgttggcgccgtagccgtagaactggaagttgacatagtcgatgacgccggag 576 |||| ||||||| |||||||||||||||||||||||||||| |||||| ||||||| | Sbjct: 14088994 acgtcggtgttgtcgccgtagccgtagaactggaagttgacgaggtcgatcacgccggcg 14088935 Query: 577 tacttcctccagagaggctggtagta 602 || || ||| || ||||||||||| Sbjct: 14088934 tagcgccgccacagcggctggtagta 14088909 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 527 tggcgccgtagccgtagaactggaagttgacatagtcgat 566 ||||||||||| |||||||||||||||||| |||||||| Sbjct: 14045504 tggcgccgtaggcgtagaactggaagttgatgtagtcgat 14045465
>gb|AF296279.1|AF296279 Oryza sativa subsp. japonica class III chitinase (chib1) gene, complete cds Length = 1038 Score = 123 bits (62), Expect = 8e-25 Identities = 161/194 (82%) Strand = Plus / Minus Query: 263 agtggttggcgacgatctgctgcgcctgggtctcatacttaaacccgtaggggctctttt 322 |||||||||||||||||| ||| |||| |||||| |||| |||| |||| ||| Sbjct: 910 agtggttggcgacgatctcctgagccttggtctcgtactcaaacttgtagctgctgacca 851 Query: 323 tagagctatccgctgagaagatgaagatccccggcagcttgccctgccgctggagctcct 382 | |||||||||||||| ||||||| | |||||||||||| ||||||||||| | ||||| Sbjct: 850 tggagctatccgctgaccagatgaacaaccccggcagcttcccctgccgctgcaactcct 791 Query: 383 tggccgcgctgatcccttgatccggcgagagcaggccggtgacgtcgccggtcttgaagc 442 | || || |||||| || |||||||||||||| |||||||||| ||||||||||||| Sbjct: 790 tcgcgccggcgatcccctgctccggcgagagcagcccggtgacgttcccggtcttgaagc 731 Query: 443 tggcgagcaacttg 456 ||||||||| |||| Sbjct: 730 tggcgagcagcttg 717 Score = 91.7 bits (46), Expect = 3e-15 Identities = 76/86 (88%) Strand = Plus / Minus Query: 517 acgttggtgttggcgccgtagccgtagaactggaagttgacatagtcgatgacgccggag 576 |||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||| | Sbjct: 665 acgtcggtgttggcgccgtagccgtagaactggaagttgacgtagtcgatcacgccggcg 606 Query: 577 tacttcctccagagaggctggtagta 602 || || ||| || ||||||||||| Sbjct: 605 tagcgccgccacagcggctggtagta 580
>gb|AF229187.1|AF229187 Oryza sativa subsp. japonica BAC clone nbxb0032I20, complete sequence Length = 144651 Score = 123 bits (62), Expect = 8e-25 Identities = 161/194 (82%) Strand = Plus / Minus Query: 263 agtggttggcgacgatctgctgcgcctgggtctcatacttaaacccgtaggggctctttt 322 |||||||||||||||||| ||| |||| |||||| |||| |||| |||| ||| Sbjct: 92916 agtggttggcgacgatctcctgagccttggtctcgtactcaaacttgtagctgctgacca 92857 Query: 323 tagagctatccgctgagaagatgaagatccccggcagcttgccctgccgctggagctcct 382 | |||||||||||||| ||||||| | |||||||||||| ||||||||||| | ||||| Sbjct: 92856 tggagctatccgctgaccagatgaacaaccccggcagcttcccctgccgctgcaactcct 92797 Query: 383 tggccgcgctgatcccttgatccggcgagagcaggccggtgacgtcgccggtcttgaagc 442 | || || |||||| || |||||||||||||| |||||||||| ||||||||||||| Sbjct: 92796 tcgcgccggcgatcccctgctccggcgagagcagcccggtgacgttcccggtcttgaagc 92737 Query: 443 tggcgagcaacttg 456 ||||||||| |||| Sbjct: 92736 tggcgagcagcttg 92723 Score = 97.6 bits (49), Expect = 4e-17 Identities = 91/105 (86%) Strand = Plus / Minus Query: 352 cccggcagcttgccctgccgctggagctccttggccgcgctgatcccttgatccggcgag 411 ||||||||||| ||||||||||| | |||||| || || |||||| || |||||| || Sbjct: 105279 cccggcagcttcccctgccgctgcaactccttcgctccggcgatcccctgctccggccag 105220 Query: 412 agcaggccggtgacgtcgccggtcttgaagctggcgagcaacttg 456 ||||| |||| ||||||||||||||||||||||||||||| |||| Sbjct: 105219 agcagcccggcgacgtcgccggtcttgaagctggcgagcaccttg 105175 Score = 91.7 bits (46), Expect = 3e-15 Identities = 76/86 (88%) Strand = Plus / Minus Query: 517 acgttggtgttggcgccgtagccgtagaactggaagttgacatagtcgatgacgccggag 576 |||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||| | Sbjct: 92671 acgtcggtgttggcgccgtagccgtagaactggaagttgacgtagtcgatcacgccggcg 92612 Query: 577 tacttcctccagagaggctggtagta 602 || || ||| || ||||||||||| Sbjct: 92611 tagcgccgccacagcggctggtagta 92586 Score = 67.9 bits (34), Expect = 4e-08 Identities = 73/86 (84%) Strand = Plus / Minus Query: 517 acgttggtgttggcgccgtagccgtagaactggaagttgacatagtcgatgacgccggag 576 |||| ||||||| |||||||||||||||||||||||||||| |||||| ||||||| | Sbjct: 105123 acgtcggtgttgtcgccgtagccgtagaactggaagttgacgaggtcgatcacgccggcg 105064 Query: 577 tacttcctccagagaggctggtagta 602 || || ||| || ||||||||||| Sbjct: 105063 tagcgccgccacagcggctggtagta 105038 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 527 tggcgccgtagccgtagaactggaagttgacatagtcgat 566 ||||||||||| |||||||||||||||||| |||||||| Sbjct: 61633 tggcgccgtaggcgtagaactggaagttgatgtagtcgat 61594
>dbj|AK104397.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-C10, full insert sequence Length = 989 Score = 123 bits (62), Expect = 8e-25 Identities = 161/194 (82%) Strand = Plus / Minus Query: 263 agtggttggcgacgatctgctgcgcctgggtctcatacttaaacccgtaggggctctttt 322 |||||||||||||||||| ||| |||| |||||| |||| |||| |||| ||| Sbjct: 915 agtggttggcgacgatctcctgagccttggtctcgtactcaaacttgtagctgctgacca 856 Query: 323 tagagctatccgctgagaagatgaagatccccggcagcttgccctgccgctggagctcct 382 | |||||||||||||| ||||||| | |||||||||||| ||||||||||| | ||||| Sbjct: 855 tggagctatccgctgaccagatgaacaaccccggcagcttcccctgccgctgcaactcct 796 Query: 383 tggccgcgctgatcccttgatccggcgagagcaggccggtgacgtcgccggtcttgaagc 442 | || || |||||| || |||||||||||||| |||||||||| ||||||||||||| Sbjct: 795 tcgcgccggcgatcccctgctccggcgagagcagcccggtgacgttcccggtcttgaagc 736 Query: 443 tggcgagcaacttg 456 ||||||||| |||| Sbjct: 735 tggcgagcagcttg 722 Score = 91.7 bits (46), Expect = 3e-15 Identities = 76/86 (88%) Strand = Plus / Minus Query: 517 acgttggtgttggcgccgtagccgtagaactggaagttgacatagtcgatgacgccggag 576 |||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||| | Sbjct: 670 acgtcggtgttggcgccgtagccgtagaactggaagttgacgtagtcgatcacgccggcg 611 Query: 577 tacttcctccagagaggctggtagta 602 || || ||| || ||||||||||| Sbjct: 610 tagcgccgccacagcggctggtagta 585
>dbj|AK104202.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-C04, full insert sequence Length = 1053 Score = 123 bits (62), Expect = 8e-25 Identities = 161/194 (82%) Strand = Plus / Minus Query: 263 agtggttggcgacgatctgctgcgcctgggtctcatacttaaacccgtaggggctctttt 322 |||||||||||||||||| ||| |||| |||||| |||| |||| |||| ||| Sbjct: 915 agtggttggcgacgatctcctgagccttggtctcgtactcaaacttgtagctgctgacca 856 Query: 323 tagagctatccgctgagaagatgaagatccccggcagcttgccctgccgctggagctcct 382 | |||||||||||||| ||||||| | |||||||||||| ||||||||||| | ||||| Sbjct: 855 tggagctatccgctgaccagatgaacaaccccggcagcttcccctgccgctgcaactcct 796 Query: 383 tggccgcgctgatcccttgatccggcgagagcaggccggtgacgtcgccggtcttgaagc 442 | || || |||||| || |||||||||||||| |||||||||| ||||||||||||| Sbjct: 795 tcgcgccggcgatcccctgctccggcgagagcagcccggtgacgttcccggtcttgaagc 736 Query: 443 tggcgagcaacttg 456 ||||||||| |||| Sbjct: 735 tggcgagcagcttg 722 Score = 91.7 bits (46), Expect = 3e-15 Identities = 76/86 (88%) Strand = Plus / Minus Query: 517 acgttggtgttggcgccgtagccgtagaactggaagttgacatagtcgatgacgccggag 576 |||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||| | Sbjct: 670 acgtcggtgttggcgccgtagccgtagaactggaagttgacgtagtcgatcacgccggcg 611 Query: 577 tacttcctccagagaggctggtagta 602 || || ||| || ||||||||||| Sbjct: 610 tagcgccgccacagcggctggtagta 585
>dbj|AK104100.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-G07, full insert sequence Length = 1026 Score = 123 bits (62), Expect = 8e-25 Identities = 161/194 (82%) Strand = Plus / Minus Query: 263 agtggttggcgacgatctgctgcgcctgggtctcatacttaaacccgtaggggctctttt 322 |||||||||||||||||| ||| |||| |||||| |||| |||| |||| ||| Sbjct: 915 agtggttggcgacgatctcctgagccttggtctcgtactcaaacttgtagctgctgacca 856 Query: 323 tagagctatccgctgagaagatgaagatccccggcagcttgccctgccgctggagctcct 382 | |||||||||||||| ||||||| | |||||||||||| ||||||||||| | ||||| Sbjct: 855 tggagctatccgctgaccagatgaacaaccccggcagcttcccctgccgctgcaactcct 796 Query: 383 tggccgcgctgatcccttgatccggcgagagcaggccggtgacgtcgccggtcttgaagc 442 | || || |||||| || |||||||||||||| |||||||||| ||||||||||||| Sbjct: 795 tcgcgccggcgatcccctgctccggcgagagcagcccggtgacgttcccggtcttgaagc 736 Query: 443 tggcgagcaacttg 456 ||||||||| |||| Sbjct: 735 tggcgagcagcttg 722 Score = 91.7 bits (46), Expect = 3e-15 Identities = 76/86 (88%) Strand = Plus / Minus Query: 517 acgttggtgttggcgccgtagccgtagaactggaagttgacatagtcgatgacgccggag 576 |||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||| | Sbjct: 670 acgtcggtgttggcgccgtagccgtagaactggaagttgacgtagtcgatcacgccggcg 611 Query: 577 tacttcctccagagaggctggtagta 602 || || ||| || ||||||||||| Sbjct: 610 tagcgccgccacagcggctggtagta 585
>dbj|AK059767.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-G07, full insert sequence Length = 1069 Score = 123 bits (62), Expect = 8e-25 Identities = 161/194 (82%) Strand = Plus / Minus Query: 263 agtggttggcgacgatctgctgcgcctgggtctcatacttaaacccgtaggggctctttt 322 |||||||||||||||||| ||| |||| |||||| |||| |||| |||| ||| Sbjct: 915 agtggttggcgacgatctcctgagccttggtctcgtactcaaacttgtagctgctgacca 856 Query: 323 tagagctatccgctgagaagatgaagatccccggcagcttgccctgccgctggagctcct 382 | |||||||||||||| ||||||| | |||||||||||| ||||||||||| | ||||| Sbjct: 855 tggagctatccgctgaccagatgaacaaccccggcagcttcccctgccgctgcaactcct 796 Query: 383 tggccgcgctgatcccttgatccggcgagagcaggccggtgacgtcgccggtcttgaagc 442 | || || |||||| || |||||||||||||| |||||||||| ||||||||||||| Sbjct: 795 tcgcgccggcgatcccctgctccggcgagagcagcccggtgacgttcccggtcttgaagc 736 Query: 443 tggcgagcaacttg 456 ||||||||| |||| Sbjct: 735 tggcgagcagcttg 722 Score = 91.7 bits (46), Expect = 3e-15 Identities = 76/86 (88%) Strand = Plus / Minus Query: 517 acgttggtgttggcgccgtagccgtagaactggaagttgacatagtcgatgacgccggag 576 |||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||| | Sbjct: 670 acgtcggtgttggcgccgtagccgtagaactggaagttgacgtagtcgatcacgccggcg 611 Query: 577 tacttcctccagagaggctggtagta 602 || || ||| || ||||||||||| Sbjct: 610 tagcgccgccacagcggctggtagta 585
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 123 bits (62), Expect = 8e-25 Identities = 161/194 (82%) Strand = Plus / Minus Query: 263 agtggttggcgacgatctgctgcgcctgggtctcatacttaaacccgtaggggctctttt 322 |||||||||||||||||| ||| |||| |||||| |||| |||| |||| ||| Sbjct: 14085029 agtggttggcgacgatctcctgagccttggtctcgtactcaaacttgtagctgctgacca 14084970 Query: 323 tagagctatccgctgagaagatgaagatccccggcagcttgccctgccgctggagctcct 382 | |||||||||||||| ||||||| | |||||||||||| ||||||||||| | ||||| Sbjct: 14084969 tggagctatccgctgaccagatgaacaaccccggcagcttcccctgccgctgcaactcct 14084910 Query: 383 tggccgcgctgatcccttgatccggcgagagcaggccggtgacgtcgccggtcttgaagc 442 | || || |||||| || |||||||||||||| |||||||||| ||||||||||||| Sbjct: 14084909 tcgcgccggcgatcccctgctccggcgagagcagcccggtgacgttcccggtcttgaagc 14084850 Query: 443 tggcgagcaacttg 456 ||||||||| |||| Sbjct: 14084849 tggcgagcagcttg 14084836 Score = 97.6 bits (49), Expect = 4e-17 Identities = 91/105 (86%) Strand = Plus / Minus Query: 352 cccggcagcttgccctgccgctggagctccttggccgcgctgatcccttgatccggcgag 411 ||||||||||| ||||||||||| | |||||| || || |||||| || |||||| || Sbjct: 14097392 cccggcagcttcccctgccgctgcaactccttcgctccggcgatcccctgctccggccag 14097333 Query: 412 agcaggccggtgacgtcgccggtcttgaagctggcgagcaacttg 456 ||||| |||| ||||||||||||||||||||||||||||| |||| Sbjct: 14097332 agcagcccggcgacgtcgccggtcttgaagctggcgagcaccttg 14097288 Score = 91.7 bits (46), Expect = 3e-15 Identities = 76/86 (88%) Strand = Plus / Minus Query: 517 acgttggtgttggcgccgtagccgtagaactggaagttgacatagtcgatgacgccggag 576 |||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||| | Sbjct: 14084784 acgtcggtgttggcgccgtagccgtagaactggaagttgacgtagtcgatcacgccggcg 14084725 Query: 577 tacttcctccagagaggctggtagta 602 || || ||| || ||||||||||| Sbjct: 14084724 tagcgccgccacagcggctggtagta 14084699 Score = 67.9 bits (34), Expect = 4e-08 Identities = 73/86 (84%) Strand = Plus / Minus Query: 517 acgttggtgttggcgccgtagccgtagaactggaagttgacatagtcgatgacgccggag 576 |||| ||||||| |||||||||||||||||||||||||||| |||||| ||||||| | Sbjct: 14097236 acgtcggtgttgtcgccgtagccgtagaactggaagttgacgaggtcgatcacgccggcg 14097177 Query: 577 tacttcctccagagaggctggtagta 602 || || ||| || ||||||||||| Sbjct: 14097176 tagcgccgccacagcggctggtagta 14097151 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 527 tggcgccgtagccgtagaactggaagttgacatagtcgat 566 ||||||||||| |||||||||||||||||| |||||||| Sbjct: 14053746 tggcgccgtaggcgtagaactggaagttgatgtagtcgat 14053707
>ref|NM_196501.1| Oryza sativa (japonica cultivar-group) putative class III chitinase (OSJNBa0032I20.12), mRNA Length = 867 Score = 97.6 bits (49), Expect = 4e-17 Identities = 91/105 (86%) Strand = Plus / Minus Query: 352 cccggcagcttgccctgccgctggagctccttggccgcgctgatcccttgatccggcgag 411 ||||||||||| ||||||||||| | |||||| || || |||||| || |||||| || Sbjct: 776 cccggcagcttcccctgccgctgcaactccttcgctccggcgatcccctgctccggccag 717 Query: 412 agcaggccggtgacgtcgccggtcttgaagctggcgagcaacttg 456 ||||| |||| ||||||||||||||||||||||||||||| |||| Sbjct: 716 agcagcccggcgacgtcgccggtcttgaagctggcgagcaccttg 672 Score = 67.9 bits (34), Expect = 4e-08 Identities = 73/86 (84%) Strand = Plus / Minus Query: 517 acgttggtgttggcgccgtagccgtagaactggaagttgacatagtcgatgacgccggag 576 |||| ||||||| |||||||||||||||||||||||||||| |||||| ||||||| | Sbjct: 620 acgtcggtgttgtcgccgtagccgtagaactggaagttgacgaggtcgatcacgccggcg 561 Query: 577 tacttcctccagagaggctggtagta 602 || || ||| || ||||||||||| Sbjct: 560 tagcgccgccacagcggctggtagta 535
>dbj|AK119555.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-E12, full insert sequence Length = 1089 Score = 97.6 bits (49), Expect = 4e-17 Identities = 91/105 (86%) Strand = Plus / Minus Query: 352 cccggcagcttgccctgccgctggagctccttggccgcgctgatcccttgatccggcgag 411 ||||||||||| ||||||||||| | |||||| || || |||||| || |||||| || Sbjct: 800 cccggcagcttcccctgccgctgcaactccttcgctccggcgatcccctgctccggccag 741 Query: 412 agcaggccggtgacgtcgccggtcttgaagctggcgagcaacttg 456 ||||| |||| ||||||||||||||||||||||||||||| |||| Sbjct: 740 agcagcccggcgacgtcgccggtcttgaagctggcgagcaccttg 696 Score = 67.9 bits (34), Expect = 4e-08 Identities = 73/86 (84%) Strand = Plus / Minus Query: 517 acgttggtgttggcgccgtagccgtagaactggaagttgacatagtcgatgacgccggag 576 |||| ||||||| |||||||||||||||||||||||||||| |||||| ||||||| | Sbjct: 644 acgtcggtgttgtcgccgtagccgtagaactggaagttgacgaggtcgatcacgccggcg 585 Query: 577 tacttcctccagagaggctggtagta 602 || || ||| || ||||||||||| Sbjct: 584 tagcgccgccacagcggctggtagta 559
>dbj|AK104292.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-F06, full insert sequence Length = 1108 Score = 97.6 bits (49), Expect = 4e-17 Identities = 91/105 (86%) Strand = Plus / Minus Query: 352 cccggcagcttgccctgccgctggagctccttggccgcgctgatcccttgatccggcgag 411 ||||||||||| ||||||||||| | |||||| || || |||||| || |||||| || Sbjct: 795 cccggcagcttcccctgccgctgcaactccttcgctccggcgatcccctgctccggccag 736 Query: 412 agcaggccggtgacgtcgccggtcttgaagctggcgagcaacttg 456 ||||| |||| ||||||||||||||||||||||||||||| |||| Sbjct: 735 agcagcccggcgacgtcgccggtcttgaagctggcgagcaccttg 691 Score = 67.9 bits (34), Expect = 4e-08 Identities = 73/86 (84%) Strand = Plus / Minus Query: 517 acgttggtgttggcgccgtagccgtagaactggaagttgacatagtcgatgacgccggag 576 |||| ||||||| |||||||||||||||||||||||||||| |||||| ||||||| | Sbjct: 639 acgtcggtgttgtcgccgtagccgtagaactggaagttgacgaggtcgatcacgccggcg 580 Query: 577 tacttcctccagagaggctggtagta 602 || || ||| || ||||||||||| Sbjct: 579 tagcgccgccacagcggctggtagta 554
>dbj|AK104222.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-E05, full insert sequence Length = 1069 Score = 97.6 bits (49), Expect = 4e-17 Identities = 91/105 (86%) Strand = Plus / Minus Query: 352 cccggcagcttgccctgccgctggagctccttggccgcgctgatcccttgatccggcgag 411 ||||||||||| ||||||||||| | |||||| || || |||||| || |||||| || Sbjct: 800 cccggcagcttcccctgccgctgcaactccttcgctccggcgatcccctgctccggccag 741 Query: 412 agcaggccggtgacgtcgccggtcttgaagctggcgagcaacttg 456 ||||| |||| ||||||||||||||||||||||||||||| |||| Sbjct: 740 agcagcccggcgacgtcgccggtcttgaagctggcgagcaccttg 696 Score = 67.9 bits (34), Expect = 4e-08 Identities = 73/86 (84%) Strand = Plus / Minus Query: 517 acgttggtgttggcgccgtagccgtagaactggaagttgacatagtcgatgacgccggag 576 |||| ||||||| |||||||||||||||||||||||||||| |||||| ||||||| | Sbjct: 644 acgtcggtgttgtcgccgtagccgtagaactggaagttgacgaggtcgatcacgccggcg 585 Query: 577 tacttcctccagagaggctggtagta 602 || || ||| || ||||||||||| Sbjct: 584 tagcgccgccacagcggctggtagta 559
>dbj|AK099101.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023025I19, full insert sequence Length = 1068 Score = 97.6 bits (49), Expect = 4e-17 Identities = 91/105 (86%) Strand = Plus / Minus Query: 352 cccggcagcttgccctgccgctggagctccttggccgcgctgatcccttgatccggcgag 411 ||||||||||| ||||||||||| | |||||| || || |||||| || |||||| || Sbjct: 799 cccggcagcttcccctgccgctgcaactccttcgctccggcgatcccctgctccggccag 740 Query: 412 agcaggccggtgacgtcgccggtcttgaagctggcgagcaacttg 456 ||||| |||| ||||||||||||||||||||||||||||| |||| Sbjct: 739 agcagcccggcgacgtcgccggtcttgaagctggcgagcaccttg 695 Score = 67.9 bits (34), Expect = 4e-08 Identities = 73/86 (84%) Strand = Plus / Minus Query: 517 acgttggtgttggcgccgtagccgtagaactggaagttgacatagtcgatgacgccggag 576 |||| ||||||| |||||||||||||||||||||||||||| |||||| ||||||| | Sbjct: 643 acgtcggtgttgtcgccgtagccgtagaactggaagttgacgaggtcgatcacgccggcg 584 Query: 577 tacttcctccagagaggctggtagta 602 || || ||| || ||||||||||| Sbjct: 583 tagcgccgccacagcggctggtagta 558
>dbj|AK060033.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H08, full insert sequence Length = 1134 Score = 97.6 bits (49), Expect = 4e-17 Identities = 91/105 (86%) Strand = Plus / Minus Query: 352 cccggcagcttgccctgccgctggagctccttggccgcgctgatcccttgatccggcgag 411 ||||||||||| ||||||||||| | |||||| || || |||||| || |||||| || Sbjct: 800 cccggcagcttcccctgccgctgcaactccttcgctccggcgatcccctgctccggccag 741 Query: 412 agcaggccggtgacgtcgccggtcttgaagctggcgagcaacttg 456 ||||| |||| ||||||||||||||||||||||||||||| |||| Sbjct: 740 agcagcccggcgacgtcgccggtcttgaagctggcgagcaccttg 696 Score = 67.9 bits (34), Expect = 4e-08 Identities = 73/86 (84%) Strand = Plus / Minus Query: 517 acgttggtgttggcgccgtagccgtagaactggaagttgacatagtcgatgacgccggag 576 |||| ||||||| |||||||||||||||||||||||||||| |||||| ||||||| | Sbjct: 644 acgtcggtgttgtcgccgtagccgtagaactggaagttgacgaggtcgatcacgccggcg 585 Query: 577 tacttcctccagagaggctggtagta 602 || || ||| || ||||||||||| Sbjct: 584 tagcgccgccacagcggctggtagta 559
>ref|NM_196494.1| Oryza sativa (japonica cultivar-group) putative class III chitinase RCB4 (OSJNBa0032I20.7), mRNA Length = 924 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 527 tggcgccgtagccgtagaactggaagttgacatagtcgat 566 ||||||||||| |||||||||||||||||| |||||||| Sbjct: 661 tggcgccgtaggcgtagaactggaagttgatgtagtcgat 622
>gb|AF350426.1| Oryza sativa (japonica cultivar-group) class III chitinase RCB4 (Rcb4) mRNA, complete cds Length = 1158 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 527 tggcgccgtagccgtagaactggaagttgacatagtcgat 566 ||||||||||| |||||||||||||||||| |||||||| Sbjct: 713 tggcgccgtaggcgtagaactggaagttgatgtagtcgat 674
>gb|AF330230.1| Oryza sativa chitinase mRNA, partial cds Length = 941 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 527 tggcgccgtagccgtagaactggaagttgacatagtcgat 566 ||||||||||| |||||||||||||||||| |||||||| Sbjct: 586 tggcgccgtaggcgtagaactggaagttgatgtagtcgat 547
>dbj|AK071453.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093F02, full insert sequence Length = 1211 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 527 tggcgccgtagccgtagaactggaagttgacatagtcgat 566 ||||||||||| |||||||||||||||||| |||||||| Sbjct: 714 tggcgccgtaggcgtagaactggaagttgatgtagtcgat 675
>dbj|AK061215.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-E04, full insert sequence Length = 1096 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 527 tggcgccgtagccgtagaactggaagttgacatagtcgat 566 ||||||||||| |||||||||||||||||| |||||||| Sbjct: 599 tggcgccgtaggcgtagaactggaagttgatgtagtcgat 560
>gb|AC108856.20| Mus musculus chromosome 8, clone RP24-355A11, complete sequence Length = 203330 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 39 catacatgcatacagacatacttcaca 65 ||||||| ||||||||||||||||||| Sbjct: 31950 catacatacatacagacatacttcaca 31976
>gb|AC164292.4| Mus musculus BAC clone RP24-177C20 from chromosome 3, complete sequence Length = 185822 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 51 cagacatacttcacactcacac 72 |||||||||||||||||||||| Sbjct: 13256 cagacatacttcacactcacac 13235
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 425 cgtcgccggtcttgaagctggc 446 |||||||||||||||||||||| Sbjct: 2612813 cgtcgccggtcttgaagctggc 2612834
>gb|AC107667.12| Mus musculus chromosome 3, clone RP23-187C2, complete sequence Length = 229632 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 51 cagacatacttcacactcacac 72 |||||||||||||||||||||| Sbjct: 142428 cagacatacttcacactcacac 142407
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 ggcgacgatctgctgcgcctgg 291 |||||||||||||||||||||| Sbjct: 776411 ggcgacgatctgctgcgcctgg 776390
>gb|CP000081.1| Leishmania major chromosome 35, complete sequence Length = 2090491 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 362 tgccctgccgctggagctccttggccgcgctga 394 |||||| ||||||||||||| || ||||||||| Sbjct: 255580 tgccctcccgctggagctccatgtccgcgctga 255612 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 362 tgccctgccgctggagctccttggccgcgctga 394 |||||| ||||||||||||| || ||||||||| Sbjct: 159256 tgccctcccgctggagctccatgtccgcgctga 159288
>gb|AY019589.1| Oryza sativa microsatellite MRG1914 containing (AT)X39, genomic sequence Length = 278 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 190 tgtacgtatatatgctgtatgcagc 214 ||||||||||||| ||||||||||| Sbjct: 77 tgtacgtatatatactgtatgcagc 53
>gb|AY018256.1| Oryza sativa microsatellite MRG0581 containing (AT)X14, genomic sequence Length = 228 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 190 tgtacgtatatatgctgtatgcagc 214 ||||||||||||| ||||||||||| Sbjct: 77 tgtacgtatatatactgtatgcagc 53
>gb|AC136149.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0060B06, complete sequence Length = 162568 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 190 tgtacgtatatatgctgtatgcagc 214 ||||||||||||| ||||||||||| Sbjct: 26026 tgtacgtatatatactgtatgcagc 26050
>ref|XM_838068.1| Leishmania major strain Friedlin proteophosphoglycan (LMJ_0984) partial mRNA Length = 4308 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 362 tgccctgccgctggagctccttggccgcgctga 394 |||||| ||||||||||||| || ||||||||| Sbjct: 1454 tgccctcccgctggagctccatgtccgcgctga 1486
>ref|XM_838071.1| Leishmania major strain Friedlin proteophosphoglycan (LMJ_0987) partial mRNA Length = 7278 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 362 tgccctgccgctggagctccttggccgcgctga 394 |||||| ||||||||||||| || ||||||||| Sbjct: 1313 tgccctcccgctggagctccatgtccgcgctga 1345
>emb|BX548045.6| Zebrafish DNA sequence from clone DKEY-224A6 in linkage group 17, complete sequence Length = 185946 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 39 catacatgcatacagacatac 59 ||||||||||||||||||||| Sbjct: 56215 catacatgcatacagacatac 56195
>gb|AC137693.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OJ1111_B01, complete sequence Length = 136068 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 190 tgtacgtatatatgctgtatgcagc 214 ||||||||||||| ||||||||||| Sbjct: 8007 tgtacgtatatatactgtatgcagc 7983
>gb|AC108409.8| Mus musculus chromosome 19, clone RP23-84G7, complete sequence Length = 270854 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 39 catacatgcatacagacatac 59 ||||||||||||||||||||| Sbjct: 54120 catacatgcatacagacatac 54100
>gb|AC171134.2| Helobdella robusta clone CH306-1A5, complete sequence Length = 95814 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 39 catacatgcatacagacatac 59 ||||||||||||||||||||| Sbjct: 18169 catacatgcatacagacatac 18149
>emb|AL645971.12| Mouse DNA sequence from clone RP23-378J19 on chromosome 11 Vontains the 5' end of the gene for novel protein similar to human RAP1 GTPase activating protein 1 RAP1GA1,,a novel gene and three CpG islands, complete sequence Length = 102898 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 42 acatgcatacagacatacttcacac 66 ||||||||||| ||||||||||||| Sbjct: 48978 acatgcatacacacatacttcacac 48954
>emb|CR847800.4| Zebrafish DNA sequence from clone DKEY-182M5 in linkage group 14, complete sequence Length = 187193 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 39 catacatgcatacagacatac 59 ||||||||||||||||||||| Sbjct: 72566 catacatgcatacagacatac 72586
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 530 cgccgtagccgtagaactgga 550 ||||||||||||||||||||| Sbjct: 784271 cgccgtagccgtagaactgga 784291
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome Length = 2696255 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 397 ccttgatccggcgagagcagg 417 ||||||||||||||||||||| Sbjct: 627842 ccttgatccggcgagagcagg 627862
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 190 tgtacgtatatatgctgtatgcagc 214 ||||||||||||| ||||||||||| Sbjct: 20483232 tgtacgtatatatactgtatgcagc 20483256
>gb|AC153535.4| Mus musculus 10 BAC RP23-398N22 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 200061 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 39 catacatgcatacagacatac 59 ||||||||||||||||||||| Sbjct: 6081 catacatgcatacagacatac 6061
>dbj|BS000134.1| Pan troglodytes chromosome 22 clone:PTB-292C11, map 22, complete sequences Length = 139978 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 39 catacatgcatacagacatac 59 ||||||||||||||||||||| Sbjct: 108750 catacatgcatacagacatac 108770
>dbj|BS000228.1| Pan troglodytes chromosome 22 clone:RP43-139F08, map 22, complete sequences Length = 160535 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 39 catacatgcatacagacatac 59 ||||||||||||||||||||| Sbjct: 14648 catacatgcatacagacatac 14668
>dbj|AP001746.1| Homo sapiens genomic DNA, chromosome 21q, section 90/105 Length = 340000 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 39 catacatgcatacagacatac 59 ||||||||||||||||||||| Sbjct: 244832 catacatgcatacagacatac 244852 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 39 catacatgcatacagacatac 59 ||||||||||||||||||||| Sbjct: 244741 catacatgcatacagacatac 244761
>emb|AL772379.11| Mouse DNA sequence from clone RP23-170D24 on chromosome 2, complete sequence Length = 99774 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 39 catacatgcatacagacatac 59 ||||||||||||||||||||| Sbjct: 15971 catacatgcatacagacatac 15951
>emb|BX000474.13| Mouse DNA sequence from clone RP24-80C21 on chromosome 2, complete sequence Length = 205184 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 39 catacatgcatacagacatac 59 ||||||||||||||||||||| Sbjct: 199035 catacatgcatacagacatac 199055
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 190 tgtacgtatatatgctgtatgcagc 214 ||||||||||||| ||||||||||| Sbjct: 20793467 tgtacgtatatatactgtatgcagc 20793491
>emb|AL662818.16| Mouse DNA sequence from clone RP23-266O8 on chromosome 4, complete sequence Length = 137323 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 38 ccatacatgcatacagacata 58 ||||||||||||||||||||| Sbjct: 59863 ccatacatgcatacagacata 59883
>gb|AC155715.24| Mus musculus 10 BAC RP24-118H2 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 174860 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 39 catacatgcatacagacatac 59 ||||||||||||||||||||| Sbjct: 171354 catacatgcatacagacatac 171334
>emb|AJ243459.1|LMA243459 Leishmania major partial ppg1 gene for proteophosphoglycan Length = 3281 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 362 tgccctgccgctggagctccttggccgcgctga 394 |||||| ||||||||||||| || ||||||||| Sbjct: 1975 tgccctcccgctggagctccatgtccgcgctga 2007
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome Length = 2695903 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 397 ccttgatccggcgagagcagg 417 ||||||||||||||||||||| Sbjct: 992964 ccttgatccggcgagagcagg 992944
>dbj|AP001624.1| Homo sapiens genomic DNA, chromosome 21, clone:KB994G8, MX1-D21S171 region, complete sequence Length = 108500 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 39 catacatgcatacagacatac 59 ||||||||||||||||||||| Sbjct: 11799 catacatgcatacagacatac 11819 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 39 catacatgcatacagacatac 59 ||||||||||||||||||||| Sbjct: 11708 catacatgcatacagacatac 11728
>dbj|AP001623.1| Homo sapiens genomic DNA, chromosome 21, clone:KB169B4, MX1-D21S171 region, complete sequence Length = 157739 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 39 catacatgcatacagacatac 59 ||||||||||||||||||||| Sbjct: 141346 catacatgcatacagacatac 141366 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 39 catacatgcatacagacatac 59 ||||||||||||||||||||| Sbjct: 141255 catacatgcatacagacatac 141275
>gb|AE010356.1| Methanopyrus kandleri AV19 section 55 of 157 of the complete genome Length = 9829 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 420 ggtgacgtcgccggtcttgaagct 443 ||||||||||||||||| |||||| Sbjct: 4105 ggtgacgtcgccggtctggaagct 4128
>gb|AC160127.2| Mus musculus BAC clone RP23-295O2 from chromosome 9, complete sequence Length = 205289 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 catacatgcatacagacata 58 |||||||||||||||||||| Sbjct: 187033 catacatgcatacagacata 187014
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome Length = 2364842 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 537 gccgtagaactggaagttga 556 |||||||||||||||||||| Sbjct: 627683 gccgtagaactggaagttga 627664
>gb|DQ233256.1| Homo sapiens complement factor H (CFH) gene, complete cds Length = 99185 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 catacatgcatacagacata 58 |||||||||||||||||||| Sbjct: 78837 catacatgcatacagacata 78818
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 gacgatctgctgcgcctggg 292 |||||||||||||||||||| Sbjct: 4430582 gacgatctgctgcgcctggg 4430601
>gb|U28992.1| Caenorhabditis elegans cosmid T05C1, complete sequence Length = 34000 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 cgctgagaagatgaagatcc 352 |||||||||||||||||||| Sbjct: 31046 cgctgagaagatgaagatcc 31027
>gb|AC010124.6| Drosophila melanogaster clone BACR06O03, complete sequence Length = 193483 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 534 gtagccgtagaactggaagt 553 |||||||||||||||||||| Sbjct: 49797 gtagccgtagaactggaagt 49778
>ref|XM_600317.2| PREDICTED: Bos taurus similar to KARP-1 binding protein 1 (LOC522044), mRNA Length = 7216 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 cgctgagaagatgaagatcc 352 |||||||||||||||||||| Sbjct: 5856 cgctgagaagatgaagatcc 5875
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 gcaggccggtgacgtcgccg 432 |||||||||||||||||||| Sbjct: 3271003 gcaggccggtgacgtcgccg 3270984
>emb|CT025598.9| Mouse DNA sequence from clone RP23-218L3 on chromosome 13, complete sequence Length = 228266 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 catacatgcatacagacata 58 |||||||||||||||||||| Sbjct: 218764 catacatgcatacagacata 218745
>gb|AC091623.2| Sus scrofa clone RP44-183E24, complete sequence Length = 200062 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 236 cgcaaacatggttcggatccagca 259 ||||||||||| |||||||||||| Sbjct: 199253 cgcaaacatggctcggatccagca 199276
>gb|U39472.1| Caenorhabditis elegans cosmid B0304, complete sequence Length = 42282 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 cgctgagaagatgaagatcc 352 |||||||||||||||||||| Sbjct: 738 cgctgagaagatgaagatcc 719
>emb|AL356441.16| Human DNA sequence from clone RP11-306I1 on chromosome 1 Contains the 5' end of a novel gene (FLJ35813), a ribosomal protein S2 (RPS2) pseudogene, a novel gene, the 5' end of the MGST3 gene for microsomal glutathione S-transferase 3 and a CpG island, complete sequence Length = 75914 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 aacccgtaggggctcttttt 323 |||||||||||||||||||| Sbjct: 20756 aacccgtaggggctcttttt 20775
>emb|AL049744.8|HSJ177P10 Human DNA sequence from clone RP1-177P10 on chromosome 1q31.2-32.1 Contains the HF1 gene for H factor 1 (complement) protein, complete sequence Length = 150626 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 catacatgcatacagacata 58 |||||||||||||||||||| Sbjct: 43428 catacatgcatacagacata 43447
>gb|AC159882.2| Mus musculus BAC clone RP24-480A4 from chromosome 9, complete sequence Length = 178827 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 catacatgcatacagacata 58 |||||||||||||||||||| Sbjct: 11592 catacatgcatacagacata 11573
>emb|BX640421.1| Bordetella pertussis strain Tohama I, complete genome; segment 11/12 Length = 349726 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 tgacgtcgccggtcttgaag 441 |||||||||||||||||||| Sbjct: 276336 tgacgtcgccggtcttgaag 276355
>emb|AL672013.9| Mouse DNA sequence from clone RP23-32G8 on chromosome 11 Contains the 3' end of the Ebf1 gene for early B-cell factor 1 and a novel gene, complete sequence Length = 207905 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 38 ccatacatgcatacagacatactt 61 ||||||||||||||| |||||||| Sbjct: 123638 ccatacatgcatacacacatactt 123661
>emb|BX537141.17| Zebrafish DNA sequence from clone DKEY-9E8 in linkage group 2, complete sequence Length = 264534 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 catacatgcatacagacata 58 |||||||||||||||||||| Sbjct: 155326 catacatgcatacagacata 155307
>dbj|AP007167.1| Aspergillus oryzae RIB40 genomic DNA, SC020 Length = 1824958 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 atacatgcatacagacatac 59 |||||||||||||||||||| Sbjct: 267449 atacatgcatacagacatac 267468
>ref|NM_141706.1| Drosophila melanogaster Arginine methyltransferase 4 CG5358-RA (Art4), mRNA Length = 2702 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 534 gtagccgtagaactggaagt 553 |||||||||||||||||||| Sbjct: 826 gtagccgtagaactggaagt 807
>gb|AC147653.5| Pan troglodytes BAC clone RP43-145M20 from chromosome 7, complete sequence Length = 192464 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 40 atacatgcatacagacatacttca 63 ||||||||||||| |||||||||| Sbjct: 189103 atacatgcatacatacatacttca 189080
>ref|NM_062395.2| Caenorhabditis elegans T05C1.4b (T05C1.4) mRNA, complete cds Length = 3492 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 cgctgagaagatgaagatcc 352 |||||||||||||||||||| Sbjct: 1155 cgctgagaagatgaagatcc 1174
>ref|NM_062394.3| Caenorhabditis elegans T05C1.4a (T05C1.4) mRNA, complete cds Length = 3761 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 cgctgagaagatgaagatcc 352 |||||||||||||||||||| Sbjct: 1155 cgctgagaagatgaagatcc 1174
>gb|AF249204.1|AF249204 Doto eireana 18S ribosomal RNA gene, complete sequence Length = 2015 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 471 tgggtagttgcgcgcctgct 490 |||||||||||||||||||| Sbjct: 501 tgggtagttgcgcgcctgct 482
>gb|AF548445.1| Uncultured bacterium plasmid pAK206 unknown genes Length = 2851 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 gttggcgacgatctgctgcg 286 |||||||||||||||||||| Sbjct: 1922 gttggcgacgatctgctgcg 1903
>gb|AC009183.5|AC009183 Drosophila melanogaster, chromosome 3R, region 85F-85F, BAC clone BACR39F04, complete sequence Length = 192055 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 534 gtagccgtagaactggaagt 553 |||||||||||||||||||| Sbjct: 6601 gtagccgtagaactggaagt 6620
>gb|BT004851.1| Drosophila melanogaster RE68504 full insert cDNA Length = 2746 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 534 gtagccgtagaactggaagt 553 |||||||||||||||||||| Sbjct: 826 gtagccgtagaactggaagt 807
>gb|AC175538.1| Mus musculus BAC clone RP24-476A4 from chromosome 13, complete sequence Length = 191199 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 catacatgcatacagacata 58 |||||||||||||||||||| Sbjct: 98765 catacatgcatacagacata 98746
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 422 tgacgtcgccggtcttgaag 441 |||||||||||||||||||| Sbjct: 2775874 tgacgtcgccggtcttgaag 2775855
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 405 cggcgagagcaggccggtga 424 |||||||||||||||||||| Sbjct: 3297383 cggcgagagcaggccggtga 3297402
>gb|AE003685.5| Drosophila melanogaster chromosome 3R, section 23 of 118 of the complete sequence Length = 241476 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 534 gtagccgtagaactggaagt 553 |||||||||||||||||||| Sbjct: 65216 gtagccgtagaactggaagt 65235
>emb|AL845434.11| Mouse DNA sequence from clone RP23-211O3 on chromosome 2, complete sequence Length = 131971 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 acatgcatacagacatactt 61 |||||||||||||||||||| Sbjct: 76790 acatgcatacagacatactt 76771
>emb|AL670882.5| Mouse DNA sequence from clone RP23-286G19 on chromosome X, complete sequence Length = 194517 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 atacatgcatacagacatac 59 |||||||||||||||||||| Sbjct: 145787 atacatgcatacagacatac 145806
>gb|AC095023.2| Sus scrofa clone RP44-405I2, complete sequence Length = 51739 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 236 cgcaaacatggttcggatccagca 259 ||||||||||| |||||||||||| Sbjct: 1770 cgcaaacatggctcggatccagca 1793 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,050,979 Number of Sequences: 3902068 Number of extensions: 4050979 Number of successful extensions: 82664 Number of sequences better than 10.0: 88 Number of HSP's better than 10.0 without gapping: 88 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81673 Number of HSP's gapped (non-prelim): 991 length of query: 652 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 629 effective length of database: 17,143,297,704 effective search space: 10783134255816 effective search space used: 10783134255816 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)