ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags37g15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FAT2_HUMAN (Q9NYQ8) Protocadherin Fat 2 precursor (hFat2) (Multi... 31 3.0
2Y1969_ARCFU (O28310) Protein AF1969 30 6.7

>FAT2_HUMAN (Q9NYQ8) Protocadherin Fat 2 precursor (hFat2) (Multiple epidermal|
            growth factor-like domains 1)
          Length = 4349

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 22/46 (47%), Positives = 26/46 (56%)
 Frame = -2

Query: 325  GPTVEASAFRTVLALCAIALQHFHTKIMDDQAILKGEPPLTTELAV 188
            G T E S   TV  L   A QHFH K+   +A+ KG+PPLT E  V
Sbjct: 2326 GSTGEMS---TVQELDYEAQQHFHVKV---RAMDKGDPPLTGETLV 2365



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>Y1969_ARCFU (O28310) Protein AF1969|
          Length = 202

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = +2

Query: 140 ILHYVDEHQLLLQSKLDGQFSSKRG 214
           I HY++E ++L Q +LDG FS KRG
Sbjct: 21  IEHYLEERKIL-QKRLDGVFSQKRG 44


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,200,109
Number of Sequences: 219361
Number of extensions: 1838615
Number of successful extensions: 4775
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4772
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6598423128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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