ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags37g12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YC81_CAEEL (Q19981) Hypothetical protein F33C8.1 precursor 35 0.31
2CERU_HUMAN (P00450) Ceruloplasmin precursor (EC 1.16.3.1) (Ferro... 30 5.8
3AKR1_MORAP (Q9UVH3) Palmitoyltransferase AKR1 (EC 2.3.1.-) (Anky... 30 7.6
4SPAN_STRPU (P98068) SPAN protein precursor (EC 3.4.24.-) 30 10.0
5CERU_MOUSE (Q61147) Ceruloplasmin precursor (EC 1.16.3.1) (Ferro... 30 10.0

>YC81_CAEEL (Q19981) Hypothetical protein F33C8.1 precursor|
          Length = 1271

 Score = 34.7 bits (78), Expect = 0.31
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
 Frame = -3

Query: 709 ITERTSEQCFKIFKTKESVMVEKYNSVVNMWRRVAFMSKGL-RYGDAVKLMSSLEDASNG 533
           +T  +  +CF       S MV+ Y+     W  ++     L R+G +V ++     A  G
Sbjct: 530 VTAGSKSECF-------SNMVQSYDVACKQWSNMSTAPVDLKRFGHSVHVIGQKLYALGG 582

Query: 532 FSHAVNSTISSLHPAKCARQRKID 461
           F+  + S + +L PAKC+   + D
Sbjct: 583 FNGKMKSDVWTLSPAKCSSATRPD 606



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>CERU_HUMAN (P00450) Ceruloplasmin precursor (EC 1.16.3.1) (Ferroxidase)|
          Length = 1065

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
 Frame = -2

Query: 566 AHVVARGCF*WIFSCCELNHLKS--------TPCKMCSSKEN*RTARHDNH 438
           A++VA+    W+ SC  LNHLK+          C   SSK+N R  +H  H
Sbjct: 324 AYMVAQNPGEWMLSCQNLNHLKAGLQAFFQVQECNKSSSKDNIR-GKHVRH 373



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>AKR1_MORAP (Q9UVH3) Palmitoyltransferase AKR1 (EC 2.3.1.-) (Ankyrin|
           repeat-containing protein AKR1) (Fragment)
          Length = 559

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 9/91 (9%)
 Frame = -2

Query: 527 SCCELNHLKSTPCKMCSSKEN*RTARHDNH-PCFYSCF-------WVALVSFATKEAKAQ 372
           SC     L+S  CK C    N   A+ D+H P  Y+C        ++  ++         
Sbjct: 276 SCIAQRPLRSKHCKFC----NRCVAKFDHHCPWIYNCIGAKNHRAFLIFLALFLSSVPIY 331

Query: 371 DQLSIVIFN-LGTQFDMILVDACPMGDSLCG 282
             LS    + L   +  +  D C +GD+LCG
Sbjct: 332 AYLSFEYLHVLSPSYVPVSSDPCLLGDTLCG 362



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>SPAN_STRPU (P98068) SPAN protein precursor (EC 3.4.24.-)|
          Length = 616

 Score = 29.6 bits (65), Expect = 10.0
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +3

Query: 534 PLEASSSDDM--SFTASPYRNPLDIKATLLHMLTTELYFSTITL 659
           P++ SSS+ M  SFT+ P       KAT + ++ T   FST TL
Sbjct: 419 PVQISSSNQMMVSFTSDPSITRRGFKATYVIIIQTTTVFSTTTL 462



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>CERU_MOUSE (Q61147) Ceruloplasmin precursor (EC 1.16.3.1) (Ferroxidase)|
          Length = 1062

 Score = 29.6 bits (65), Expect = 10.0
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
 Frame = -2

Query: 566 AHVVARGCF*WIFSCCELNHLKS--------TPCKMCSSKEN*RTARHDNH 438
           A++VA+    W+ SC  LNHLK+          C   SSK+N R  +H  H
Sbjct: 323 AYMVAQNPGVWMLSCQNLNHLKAGLQAFFQVQDCNKPSSKDNIR-GKHVRH 372


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,111,128
Number of Sequences: 219361
Number of extensions: 1898921
Number of successful extensions: 4535
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4534
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7536258401
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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