| Clone Name | rbags37g11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_469230.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1647 Score = 402 bits (203), Expect = e-109 Identities = 356/407 (87%) Strand = Plus / Minus Query: 300 ttcagatccgagtcggcgacgaccaagacggagtccccaggtttcactgaacccttggac 359 |||||||| |||||||||||||||||||| | ||| |||| ||||||||||||||| ||| Sbjct: 1589 ttcagatcagagtcggcgacgaccaagactgtgtctccagatttcactgaacccttcgac 1530 Query: 360 ttgaggagcttgatggtttgcttgaagttatcgtccatgttatttgacagcgggagctgg 419 || | |||||||||||||| ||||||||||| ||||||||||||||||| || ||||| Sbjct: 1529 ttcataagcttgatggtttgattgaagttatcttccatgttatttgacagtggtagctga 1470 Query: 420 agcgggatcacaccccagtaaaggttcatgctctttctcgtgttggcgtcatcggtgaac 479 || || || || |||||||| ||||||||||||||||| | |||||| | ||| ||||| Sbjct: 1469 agtggaattactccccagtagaggttcatgctctttcttgagttggcattatcagtgaaa 1410 Query: 480 gcaaagatgggagggttgggccggttgcgtgataggagcgacgccatgtggccatgcttt 539 ||||| ||||||||||||||||||||||| || || |||||||||||||| |||| |||| Sbjct: 1409 gcaaaaatgggagggttgggccggttgcgcgaaagaagcgacgccatgtgaccatacttt 1350 Query: 540 gtgtagacgaagatggcgtccacggcaaggttgttcgccatttccacagcactgatgcaa 599 ||||| || |||||||| ||||| ||||||||||| |||||||| |||||||| ||||| Sbjct: 1349 gtgtaaacaaagatggcatccaccgcaaggttgtttgccatttctgcagcactggtgcaa 1290 Query: 600 atctgctccgaaatccggtcaggcagggctattgcaagctgatattgcggaagaagtcgt 659 || ||||| || |||| ||||||| |||||||||||||||| ||| ||||||||| Sbjct: 1289 atttgctctgagatcctatcaggcaaagctattgcaagctgatgttgtggaagaagtttc 1230 Query: 660 tgcatgttttcctcacggctccatgattccatcctctcactagcagc 706 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1229 tgcatgttttcctcacggctccatgattccatcctctcactagcagc 1183
>dbj|AK109881.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-C12, full insert sequence Length = 1806 Score = 402 bits (203), Expect = e-109 Identities = 356/407 (87%) Strand = Plus / Minus Query: 300 ttcagatccgagtcggcgacgaccaagacggagtccccaggtttcactgaacccttggac 359 |||||||| |||||||||||||||||||| | ||| |||| ||||||||||||||| ||| Sbjct: 1663 ttcagatcagagtcggcgacgaccaagactgtgtctccagatttcactgaacccttcgac 1604 Query: 360 ttgaggagcttgatggtttgcttgaagttatcgtccatgttatttgacagcgggagctgg 419 || | |||||||||||||| ||||||||||| ||||||||||||||||| || ||||| Sbjct: 1603 ttcataagcttgatggtttgattgaagttatcttccatgttatttgacagtggtagctga 1544 Query: 420 agcgggatcacaccccagtaaaggttcatgctctttctcgtgttggcgtcatcggtgaac 479 || || || || |||||||| ||||||||||||||||| | |||||| | ||| ||||| Sbjct: 1543 agtggaattactccccagtagaggttcatgctctttcttgagttggcattatcagtgaaa 1484 Query: 480 gcaaagatgggagggttgggccggttgcgtgataggagcgacgccatgtggccatgcttt 539 ||||| ||||||||||||||||||||||| || || |||||||||||||| |||| |||| Sbjct: 1483 gcaaaaatgggagggttgggccggttgcgcgaaagaagcgacgccatgtgaccatacttt 1424 Query: 540 gtgtagacgaagatggcgtccacggcaaggttgttcgccatttccacagcactgatgcaa 599 ||||| || |||||||| ||||| ||||||||||| |||||||| |||||||| ||||| Sbjct: 1423 gtgtaaacaaagatggcatccaccgcaaggttgtttgccatttctgcagcactggtgcaa 1364 Query: 600 atctgctccgaaatccggtcaggcagggctattgcaagctgatattgcggaagaagtcgt 659 || ||||| || |||| ||||||| |||||||||||||||| ||| ||||||||| Sbjct: 1363 atttgctctgagatcctatcaggcaaagctattgcaagctgatgttgtggaagaagtttc 1304 Query: 660 tgcatgttttcctcacggctccatgattccatcctctcactagcagc 706 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1303 tgcatgttttcctcacggctccatgattccatcctctcactagcagc 1257
>dbj|AK103388.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033127I24, full insert sequence Length = 1883 Score = 402 bits (203), Expect = e-109 Identities = 356/407 (87%) Strand = Plus / Minus Query: 300 ttcagatccgagtcggcgacgaccaagacggagtccccaggtttcactgaacccttggac 359 |||||||| |||||||||||||||||||| | ||| |||| ||||||||||||||| ||| Sbjct: 1664 ttcagatcagagtcggcgacgaccaagactgtgtctccagatttcactgaacccttcgac 1605 Query: 360 ttgaggagcttgatggtttgcttgaagttatcgtccatgttatttgacagcgggagctgg 419 || | |||||||||||||| ||||||||||| ||||||||||||||||| || ||||| Sbjct: 1604 ttcataagcttgatggtttgattgaagttatcttccatgttatttgacagtggtagctga 1545 Query: 420 agcgggatcacaccccagtaaaggttcatgctctttctcgtgttggcgtcatcggtgaac 479 || || || || |||||||| ||||||||||||||||| | |||||| | ||| ||||| Sbjct: 1544 agtggaattactccccagtagaggttcatgctctttcttgagttggcattatcagtgaaa 1485 Query: 480 gcaaagatgggagggttgggccggttgcgtgataggagcgacgccatgtggccatgcttt 539 ||||| ||||||||||||||||||||||| || || |||||||||||||| |||| |||| Sbjct: 1484 gcaaaaatgggagggttgggccggttgcgcgaaagaagcgacgccatgtgaccatacttt 1425 Query: 540 gtgtagacgaagatggcgtccacggcaaggttgttcgccatttccacagcactgatgcaa 599 ||||| || |||||||| ||||| ||||||||||| |||||||| |||||||| ||||| Sbjct: 1424 gtgtaaacaaagatggcatccaccgcaaggttgtttgccatttctgcagcactggtgcaa 1365 Query: 600 atctgctccgaaatccggtcaggcagggctattgcaagctgatattgcggaagaagtcgt 659 || ||||| || |||| ||||||| |||||||||||||||| ||| ||||||||| Sbjct: 1364 atttgctctgagatcctatcaggcaaagctattgcaagctgatgttgtggaagaagtttc 1305 Query: 660 tgcatgttttcctcacggctccatgattccatcctctcactagcagc 706 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1304 tgcatgttttcctcacggctccatgattccatcctctcactagcagc 1258
>gb|AY110008.1| Zea mays CL3258_1 mRNA sequence Length = 1061 Score = 287 bits (145), Expect = 2e-74 Identities = 375/452 (82%), Gaps = 6/452 (1%) Strand = Plus / Plus Query: 249 cggacctgaatggattggtacaccgatgatgtggcagcagcacaaggctgattcagatcc 308 |||||||||||||||||| ||||||| || ||||||||||| || || ||||| Sbjct: 179 cggacctgaatggattggaacaccga------ggtggcagcacaaggttggtttagatca 232 Query: 309 gagtcggcgacgaccaagacggagtccccaggtttcactgaacccttggacttgaggagc 368 || || | || |||||||| | ||| || ||||||||||||||||| ||| | | || Sbjct: 233 gaatctgataccaccaagaccgtgtctccgggtttcactgaacccttcgacctcatcagg 292 Query: 369 ttgatggtttgcttgaagttatcgtccatgttatttgacagcgggagctggagcgggatc 428 ||||||||| ||||||||||| |||||| ||||||||| || || || || || ||| Sbjct: 293 ctgatggttttgttgaagttatcctccatgctatttgacaatggtagatgaagtggaatc 352 Query: 429 acaccccagtaaaggttcatgctctttctcgtgttggcgtcatcggtgaacgcaaagatg 488 || |||||||| ||||||||||||||||| | ||||| | ||| |||||||| || ||| Sbjct: 353 actccccagtagaggttcatgctctttcttgaattggcattatcagtgaacgcgaatatg 412 Query: 489 ggagggttgggccggttgcgtgataggagcgacgccatgtggccatgctttgtgtagacg 548 ||||||||||| |||||||| ||||| || || |||||||| ||||||||||||||||| Sbjct: 413 ggagggttgggtcggttgcgcgatagaagtgatgccatgtgaccatgctttgtgtagaca 472 Query: 549 aagatggcgtccacggcaaggttgttcgccatttccacagcactgatgcaaatctgctcc 608 || ||||| ||||| ||||||||||| |||||||| ||||||| | ||||||||||||| Sbjct: 473 aatatggcatccacagcaaggttgtttgccatttctacagcacagctgcaaatctgctct 532 Query: 609 gaaatccggtcaggcagggctattgcaagctgatattgcggaagaagtcgttgcatgttt 668 || ||||||||||||| || ||||||||||||| | ||||||||| ||||||||| Sbjct: 533 gagatccggtcaggcaatgcaattgcaagctgatgccgtggaagaagtttctgcatgttt 592 Query: 669 tcctcacggctccatgattccatcctctcact 700 |||||||||||||||||||||||||| ||||| Sbjct: 593 tcctcacggctccatgattccatcctttcact 624
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 268 bits (135), Expect = 2e-68 Identities = 240/275 (87%) Strand = Plus / Plus Query: 300 ttcagatccgagtcggcgacgaccaagacggagtccccaggtttcactgaacccttggac 359 |||||||| |||||||||||||||||||| | ||| |||| ||||||||||||||| ||| Sbjct: 26235581 ttcagatcagagtcggcgacgaccaagactgtgtctccagatttcactgaacccttcgac 26235640 Query: 360 ttgaggagcttgatggtttgcttgaagttatcgtccatgttatttgacagcgggagctgg 419 || | |||||||||||||| ||||||||||| ||||||||||||||||| || ||||| Sbjct: 26235641 ttcataagcttgatggtttgattgaagttatcttccatgttatttgacagtggtagctga 26235700 Query: 420 agcgggatcacaccccagtaaaggttcatgctctttctcgtgttggcgtcatcggtgaac 479 || || || || |||||||| ||||||||||||||||| | |||||| | ||| ||||| Sbjct: 26235701 agtggaattactccccagtagaggttcatgctctttcttgagttggcattatcagtgaaa 26235760 Query: 480 gcaaagatgggagggttgggccggttgcgtgataggagcgacgccatgtggccatgcttt 539 ||||| ||||||||||||||||||||||| || || |||||||||||||| |||| |||| Sbjct: 26235761 gcaaaaatgggagggttgggccggttgcgcgaaagaagcgacgccatgtgaccatacttt 26235820 Query: 540 gtgtagacgaagatggcgtccacggcaaggttgtt 574 ||||| || |||||||| ||||| ||||||||||| Sbjct: 26235821 gtgtaaacaaagatggcatccaccgcaaggttgtt 26235855 Score = 139 bits (70), Expect = 1e-29 Identities = 115/130 (88%) Strand = Plus / Plus Query: 577 ccatttccacagcactgatgcaaatctgctccgaaatccggtcaggcagggctattgcaa 636 ||||||| |||||||| ||||||| ||||| || |||| ||||||| |||||||||| Sbjct: 26235986 ccatttctgcagcactggtgcaaatttgctctgagatcctatcaggcaaagctattgcaa 26236045 Query: 637 gctgatattgcggaagaagtcgttgcatgttttcctcacggctccatgattccatcctct 696 |||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 26236046 gctgatgttgtggaagaagtttctgcatgttttcctcacggctccatgattccatcctct 26236105 Query: 697 cactagcagc 706 |||||||||| Sbjct: 26236106 cactagcagc 26236115 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Minus Query: 353 cttggacttgaggagcttgatg 374 |||||||||||||||||||||| Sbjct: 33287942 cttggacttgaggagcttgatg 33287921
>gb|AC116369.5| Oryza sativa chromosome 3 BAC OSJNBb0113I20 genomic sequence, complete sequence Length = 122939 Score = 268 bits (135), Expect = 2e-68 Identities = 240/275 (87%) Strand = Plus / Plus Query: 300 ttcagatccgagtcggcgacgaccaagacggagtccccaggtttcactgaacccttggac 359 |||||||| |||||||||||||||||||| | ||| |||| ||||||||||||||| ||| Sbjct: 65040 ttcagatcagagtcggcgacgaccaagactgtgtctccagatttcactgaacccttcgac 65099 Query: 360 ttgaggagcttgatggtttgcttgaagttatcgtccatgttatttgacagcgggagctgg 419 || | |||||||||||||| ||||||||||| ||||||||||||||||| || ||||| Sbjct: 65100 ttcataagcttgatggtttgattgaagttatcttccatgttatttgacagtggtagctga 65159 Query: 420 agcgggatcacaccccagtaaaggttcatgctctttctcgtgttggcgtcatcggtgaac 479 || || || || |||||||| ||||||||||||||||| | |||||| | ||| ||||| Sbjct: 65160 agtggaattactccccagtagaggttcatgctctttcttgagttggcattatcagtgaaa 65219 Query: 480 gcaaagatgggagggttgggccggttgcgtgataggagcgacgccatgtggccatgcttt 539 ||||| ||||||||||||||||||||||| || || |||||||||||||| |||| |||| Sbjct: 65220 gcaaaaatgggagggttgggccggttgcgcgaaagaagcgacgccatgtgaccatacttt 65279 Query: 540 gtgtagacgaagatggcgtccacggcaaggttgtt 574 ||||| || |||||||| ||||| ||||||||||| Sbjct: 65280 gtgtaaacaaagatggcatccaccgcaaggttgtt 65314 Score = 139 bits (70), Expect = 1e-29 Identities = 115/130 (88%) Strand = Plus / Plus Query: 577 ccatttccacagcactgatgcaaatctgctccgaaatccggtcaggcagggctattgcaa 636 ||||||| |||||||| ||||||| ||||| || |||| ||||||| |||||||||| Sbjct: 65445 ccatttctgcagcactggtgcaaatttgctctgagatcctatcaggcaaagctattgcaa 65504 Query: 637 gctgatattgcggaagaagtcgttgcatgttttcctcacggctccatgattccatcctct 696 |||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 65505 gctgatgttgtggaagaagtttctgcatgttttcctcacggctccatgattccatcctct 65564 Query: 697 cactagcagc 706 |||||||||| Sbjct: 65565 cactagcagc 65574
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 268 bits (135), Expect = 2e-68 Identities = 240/275 (87%) Strand = Plus / Plus Query: 300 ttcagatccgagtcggcgacgaccaagacggagtccccaggtttcactgaacccttggac 359 |||||||| |||||||||||||||||||| | ||| |||| ||||||||||||||| ||| Sbjct: 26326890 ttcagatcagagtcggcgacgaccaagactgtgtctccagatttcactgaacccttcgac 26326949 Query: 360 ttgaggagcttgatggtttgcttgaagttatcgtccatgttatttgacagcgggagctgg 419 || | |||||||||||||| ||||||||||| ||||||||||||||||| || ||||| Sbjct: 26326950 ttcataagcttgatggtttgattgaagttatcttccatgttatttgacagtggtagctga 26327009 Query: 420 agcgggatcacaccccagtaaaggttcatgctctttctcgtgttggcgtcatcggtgaac 479 || || || || |||||||| ||||||||||||||||| | |||||| | ||| ||||| Sbjct: 26327010 agtggaattactccccagtagaggttcatgctctttcttgagttggcattatcagtgaaa 26327069 Query: 480 gcaaagatgggagggttgggccggttgcgtgataggagcgacgccatgtggccatgcttt 539 ||||| ||||||||||||||||||||||| || || |||||||||||||| |||| |||| Sbjct: 26327070 gcaaaaatgggagggttgggccggttgcgcgaaagaagcgacgccatgtgaccatacttt 26327129 Query: 540 gtgtagacgaagatggcgtccacggcaaggttgtt 574 ||||| || |||||||| ||||| ||||||||||| Sbjct: 26327130 gtgtaaacaaagatggcatccaccgcaaggttgtt 26327164 Score = 139 bits (70), Expect = 1e-29 Identities = 115/130 (88%) Strand = Plus / Plus Query: 577 ccatttccacagcactgatgcaaatctgctccgaaatccggtcaggcagggctattgcaa 636 ||||||| |||||||| ||||||| ||||| || |||| ||||||| |||||||||| Sbjct: 26327295 ccatttctgcagcactggtgcaaatttgctctgagatcctatcaggcaaagctattgcaa 26327354 Query: 637 gctgatattgcggaagaagtcgttgcatgttttcctcacggctccatgattccatcctct 696 |||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 26327355 gctgatgttgtggaagaagtttctgcatgttttcctcacggctccatgattccatcctct 26327414 Query: 697 cactagcagc 706 |||||||||| Sbjct: 26327415 cactagcagc 26327424 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Minus Query: 353 cttggacttgaggagcttgatg 374 |||||||||||||||||||||| Sbjct: 33378452 cttggacttgaggagcttgatg 33378431
>ref|XM_470004.1| Oryza sativa (japonica cultivar-group), mRNA Length = 678 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Minus Query: 353 cttggacttgaggagcttgatg 374 |||||||||||||||||||||| Sbjct: 672 cttggacttgaggagcttgatg 651
>gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 genomic sequence, complete sequence Length = 122815 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Minus Query: 353 cttggacttgaggagcttgatg 374 |||||||||||||||||||||| Sbjct: 44458 cttggacttgaggagcttgatg 44437
>gb|AY386265.1| Bovine papular stomatitis virus strain BV-AR02, complete genome Length = 134431 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Minus Query: 408 agcgggagctggagcgggatca 429 |||||||||||||||||||||| Sbjct: 116790 agcgggagctggagcgggatca 116769
>gb|AC100600.22| Mus musculus chromosome 9, clone RP23-157H17, complete sequence Length = 225538 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 163 atgcatgcacaaatacacaaa 183 ||||||||||||||||||||| Sbjct: 131357 atgcatgcacaaatacacaaa 131337
>emb|BX571774.9| Zebrafish DNA sequence from clone DKEY-250A19 in linkage group 9, complete sequence Length = 140812 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 577 ccatttccacagcactgatgc 597 ||||||||||||||||||||| Sbjct: 123056 ccatttccacagcactgatgc 123036
>emb|BX088727.14| Zebrafish DNA sequence from clone DKEY-218A22 in linkage group 2, complete sequence Length = 185178 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 gatcatatatctcacacactg 145 ||||||||||||||||||||| Sbjct: 43014 gatcatatatctcacacactg 42994
>ref|XM_324031.1| Neurospora crassa OR74A hypothetical protein (NCU04676.1) partial mRNA Length = 2202 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 479 cgcaaagatgggagggttgg 498 |||||||||||||||||||| Sbjct: 1632 cgcaaagatgggagggttgg 1613
>ref|XM_954126.1| Neurospora crassa OR74A hypothetical protein (NCU04676.1) partial mRNA Length = 2202 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 479 cgcaaagatgggagggttgg 498 |||||||||||||||||||| Sbjct: 1632 cgcaaagatgggagggttgg 1613
>emb|CR762392.5| Zebrafish DNA sequence from clone DKEY-265A11 in linkage group 8, complete sequence Length = 203490 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 catgcacaaatacacaaact 185 |||||||||||||||||||| Sbjct: 59367 catgcacaaatacacaaact 59348
>gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete sequence Length = 3281944 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 408 agcgggagctggagcgggat 427 |||||||||||||||||||| Sbjct: 1692013 agcgggagctggagcgggat 1692032
>gb|AC095504.7| Rattus norvegicus 2 BAC CH230-7P18 (Children's Hospital Oakland Research Institute) complete sequence Length = 227012 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 tgcatgcacaaatacacaaa 183 |||||||||||||||||||| Sbjct: 206652 tgcatgcacaaatacacaaa 206633
>gb|AC134407.6| Homo sapiens chromosome 17, clone RP11-855A2, complete sequence Length = 199875 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 167 atgcacaaatacacaaactgttct 190 ||||||||| |||||||||||||| Sbjct: 148794 atgcacaaacacacaaactgttct 148817
>emb|BX294013.1|NCX4G11 Neurospora crassa DNA linkage group V Cosmid contig X4G11 Length = 119154 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 479 cgcaaagatgggagggttgg 498 |||||||||||||||||||| Sbjct: 96448 cgcaaagatgggagggttgg 96467
>emb|AL831791.5| Zebrafish DNA sequence from clone DKEY-76P14 in linkage group 11 Contains a novel gene similar to human and rodent RRAD (Ras-related protein associated with diabetes), a novel gene, a novel gene similar to mouse PNP (purine-nucleoside phosphorylase), a novel gene similar to human and rodent SOX11 (SRY (sex determining region Y)-box 11) and a CpG island, complete sequence Length = 204498 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 gcatgcacaaatacacaaac 184 |||||||||||||||||||| Sbjct: 153608 gcatgcacaaatacacaaac 153589
>emb|CR932803.1| Mus musculus chromosome 2, clone GenSys-110A4 strain 129/Sv, complete sequence Length = 134122 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 620 aggcagggctattgcaagct 639 |||||||||||||||||||| Sbjct: 59189 aggcagggctattgcaagct 59208
>emb|AL928860.10| Mouse DNA sequence from clone RP23-5I15 on chromosome 2, complete sequence Length = 132808 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 620 aggcagggctattgcaagct 639 |||||||||||||||||||| Sbjct: 50958 aggcagggctattgcaagct 50977
>emb|BX571943.8| Zebrafish DNA sequence from clone DKEY-159C24 in linkage group 13, complete sequence Length = 193538 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 atgcacaaatacacaaactg 186 |||||||||||||||||||| Sbjct: 33209 atgcacaaatacacaaactg 33228
>gb|AC003036.1|AC003036 Homo sapiens Xp22 PAC RPCI1-108M6 (Roswell Park Cancer Center PAC library) complete sequence Length = 123203 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 acagttttcatggagatcaa 121 |||||||||||||||||||| Sbjct: 14047 acagttttcatggagatcaa 14028
>gb|AC123759.7| Mus musculus chromosome 3, clone RP24-303I14, complete sequence Length = 189387 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 aatgcatgcacaaatacaca 181 |||||||||||||||||||| Sbjct: 54749 aatgcatgcacaaatacaca 54730
>gb|AC102467.6| Mus musculus chromosome 1, clone RP24-348G21, complete sequence Length = 167344 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 aatgcatgcacaaatacaca 181 |||||||||||||||||||| Sbjct: 50107 aatgcatgcacaaatacaca 50126 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,776,544 Number of Sequences: 3902068 Number of extensions: 4776544 Number of successful extensions: 87967 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87760 Number of HSP's gapped (non-prelim): 207 length of query: 711 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 688 effective length of database: 17,143,297,704 effective search space: 11794588820352 effective search space used: 11794588820352 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)