ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags37g11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_469230.1| Oryza sativa (japonica cultivar-group), mRNA 402 e-109
2dbj|AK109881.1| Oryza sativa (japonica cultivar-group) cDNA clon... 402 e-109
3dbj|AK103388.1| Oryza sativa (japonica cultivar-group) cDNA clon... 402 e-109
4gb|AY110008.1| Zea mays CL3258_1 mRNA sequence 287 2e-74
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 268 2e-68
6gb|AC116369.5| Oryza sativa chromosome 3 BAC OSJNBb0113I20 genom... 268 2e-68
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 268 2e-68
8ref|XM_470004.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.62
9gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 genom... 44 0.62
10gb|AY386265.1| Bovine papular stomatitis virus strain BV-AR02, c... 44 0.62
11gb|AC100600.22| Mus musculus chromosome 9, clone RP23-157H17, co... 42 2.5
12emb|BX571774.9| Zebrafish DNA sequence from clone DKEY-250A19 in... 42 2.5
13emb|BX088727.14| Zebrafish DNA sequence from clone DKEY-218A22 i... 42 2.5
14ref|XM_324031.1| Neurospora crassa OR74A hypothetical protein (N... 40 9.7
15ref|XM_954126.1| Neurospora crassa OR74A hypothetical protein (N... 40 9.7
16emb|CR762392.5| Zebrafish DNA sequence from clone DKEY-265A11 in... 40 9.7
17gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete seq... 40 9.7
18gb|AC095504.7| Rattus norvegicus 2 BAC CH230-7P18 (Children's Ho... 40 9.7
19gb|AC134407.6| Homo sapiens chromosome 17, clone RP11-855A2, com... 40 9.7
20emb|BX294013.1|NCX4G11 Neurospora crassa DNA linkage group V Cos... 40 9.7
21emb|AL831791.5| Zebrafish DNA sequence from clone DKEY-76P14 in ... 40 9.7
22emb|CR932803.1| Mus musculus chromosome 2, clone GenSys-110A4 st... 40 9.7
23emb|AL928860.10| Mouse DNA sequence from clone RP23-5I15 on chro... 40 9.7
24emb|BX571943.8| Zebrafish DNA sequence from clone DKEY-159C24 in... 40 9.7
25gb|AC003036.1|AC003036 Homo sapiens Xp22 PAC RPCI1-108M6 (Roswel... 40 9.7
26gb|AC123759.7| Mus musculus chromosome 3, clone RP24-303I14, com... 40 9.7
27gb|AC102467.6| Mus musculus chromosome 1, clone RP24-348G21, com... 40 9.7

>ref|XM_469230.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1647

 Score =  402 bits (203), Expect = e-109
 Identities = 356/407 (87%)
 Strand = Plus / Minus

                                                                        
Query: 300  ttcagatccgagtcggcgacgaccaagacggagtccccaggtttcactgaacccttggac 359
            |||||||| |||||||||||||||||||| | ||| |||| ||||||||||||||| |||
Sbjct: 1589 ttcagatcagagtcggcgacgaccaagactgtgtctccagatttcactgaacccttcgac 1530

                                                                        
Query: 360  ttgaggagcttgatggtttgcttgaagttatcgtccatgttatttgacagcgggagctgg 419
            || |  |||||||||||||| ||||||||||| ||||||||||||||||| || ||||| 
Sbjct: 1529 ttcataagcttgatggtttgattgaagttatcttccatgttatttgacagtggtagctga 1470

                                                                        
Query: 420  agcgggatcacaccccagtaaaggttcatgctctttctcgtgttggcgtcatcggtgaac 479
            || || || || |||||||| ||||||||||||||||| | |||||| | ||| ||||| 
Sbjct: 1469 agtggaattactccccagtagaggttcatgctctttcttgagttggcattatcagtgaaa 1410

                                                                        
Query: 480  gcaaagatgggagggttgggccggttgcgtgataggagcgacgccatgtggccatgcttt 539
            ||||| ||||||||||||||||||||||| || || |||||||||||||| |||| ||||
Sbjct: 1409 gcaaaaatgggagggttgggccggttgcgcgaaagaagcgacgccatgtgaccatacttt 1350

                                                                        
Query: 540  gtgtagacgaagatggcgtccacggcaaggttgttcgccatttccacagcactgatgcaa 599
            ||||| || |||||||| ||||| ||||||||||| ||||||||  |||||||| |||||
Sbjct: 1349 gtgtaaacaaagatggcatccaccgcaaggttgtttgccatttctgcagcactggtgcaa 1290

                                                                        
Query: 600  atctgctccgaaatccggtcaggcagggctattgcaagctgatattgcggaagaagtcgt 659
            || ||||| || ||||  |||||||  |||||||||||||||| ||| |||||||||   
Sbjct: 1289 atttgctctgagatcctatcaggcaaagctattgcaagctgatgttgtggaagaagtttc 1230

                                                           
Query: 660  tgcatgttttcctcacggctccatgattccatcctctcactagcagc 706
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1229 tgcatgttttcctcacggctccatgattccatcctctcactagcagc 1183



to top

>dbj|AK109881.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-C12, full
            insert sequence
          Length = 1806

 Score =  402 bits (203), Expect = e-109
 Identities = 356/407 (87%)
 Strand = Plus / Minus

                                                                        
Query: 300  ttcagatccgagtcggcgacgaccaagacggagtccccaggtttcactgaacccttggac 359
            |||||||| |||||||||||||||||||| | ||| |||| ||||||||||||||| |||
Sbjct: 1663 ttcagatcagagtcggcgacgaccaagactgtgtctccagatttcactgaacccttcgac 1604

                                                                        
Query: 360  ttgaggagcttgatggtttgcttgaagttatcgtccatgttatttgacagcgggagctgg 419
            || |  |||||||||||||| ||||||||||| ||||||||||||||||| || ||||| 
Sbjct: 1603 ttcataagcttgatggtttgattgaagttatcttccatgttatttgacagtggtagctga 1544

                                                                        
Query: 420  agcgggatcacaccccagtaaaggttcatgctctttctcgtgttggcgtcatcggtgaac 479
            || || || || |||||||| ||||||||||||||||| | |||||| | ||| ||||| 
Sbjct: 1543 agtggaattactccccagtagaggttcatgctctttcttgagttggcattatcagtgaaa 1484

                                                                        
Query: 480  gcaaagatgggagggttgggccggttgcgtgataggagcgacgccatgtggccatgcttt 539
            ||||| ||||||||||||||||||||||| || || |||||||||||||| |||| ||||
Sbjct: 1483 gcaaaaatgggagggttgggccggttgcgcgaaagaagcgacgccatgtgaccatacttt 1424

                                                                        
Query: 540  gtgtagacgaagatggcgtccacggcaaggttgttcgccatttccacagcactgatgcaa 599
            ||||| || |||||||| ||||| ||||||||||| ||||||||  |||||||| |||||
Sbjct: 1423 gtgtaaacaaagatggcatccaccgcaaggttgtttgccatttctgcagcactggtgcaa 1364

                                                                        
Query: 600  atctgctccgaaatccggtcaggcagggctattgcaagctgatattgcggaagaagtcgt 659
            || ||||| || ||||  |||||||  |||||||||||||||| ||| |||||||||   
Sbjct: 1363 atttgctctgagatcctatcaggcaaagctattgcaagctgatgttgtggaagaagtttc 1304

                                                           
Query: 660  tgcatgttttcctcacggctccatgattccatcctctcactagcagc 706
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1303 tgcatgttttcctcacggctccatgattccatcctctcactagcagc 1257



to top

>dbj|AK103388.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033127I24, full
            insert sequence
          Length = 1883

 Score =  402 bits (203), Expect = e-109
 Identities = 356/407 (87%)
 Strand = Plus / Minus

                                                                        
Query: 300  ttcagatccgagtcggcgacgaccaagacggagtccccaggtttcactgaacccttggac 359
            |||||||| |||||||||||||||||||| | ||| |||| ||||||||||||||| |||
Sbjct: 1664 ttcagatcagagtcggcgacgaccaagactgtgtctccagatttcactgaacccttcgac 1605

                                                                        
Query: 360  ttgaggagcttgatggtttgcttgaagttatcgtccatgttatttgacagcgggagctgg 419
            || |  |||||||||||||| ||||||||||| ||||||||||||||||| || ||||| 
Sbjct: 1604 ttcataagcttgatggtttgattgaagttatcttccatgttatttgacagtggtagctga 1545

                                                                        
Query: 420  agcgggatcacaccccagtaaaggttcatgctctttctcgtgttggcgtcatcggtgaac 479
            || || || || |||||||| ||||||||||||||||| | |||||| | ||| ||||| 
Sbjct: 1544 agtggaattactccccagtagaggttcatgctctttcttgagttggcattatcagtgaaa 1485

                                                                        
Query: 480  gcaaagatgggagggttgggccggttgcgtgataggagcgacgccatgtggccatgcttt 539
            ||||| ||||||||||||||||||||||| || || |||||||||||||| |||| ||||
Sbjct: 1484 gcaaaaatgggagggttgggccggttgcgcgaaagaagcgacgccatgtgaccatacttt 1425

                                                                        
Query: 540  gtgtagacgaagatggcgtccacggcaaggttgttcgccatttccacagcactgatgcaa 599
            ||||| || |||||||| ||||| ||||||||||| ||||||||  |||||||| |||||
Sbjct: 1424 gtgtaaacaaagatggcatccaccgcaaggttgtttgccatttctgcagcactggtgcaa 1365

                                                                        
Query: 600  atctgctccgaaatccggtcaggcagggctattgcaagctgatattgcggaagaagtcgt 659
            || ||||| || ||||  |||||||  |||||||||||||||| ||| |||||||||   
Sbjct: 1364 atttgctctgagatcctatcaggcaaagctattgcaagctgatgttgtggaagaagtttc 1305

                                                           
Query: 660  tgcatgttttcctcacggctccatgattccatcctctcactagcagc 706
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1304 tgcatgttttcctcacggctccatgattccatcctctcactagcagc 1258



to top

>gb|AY110008.1| Zea mays CL3258_1 mRNA sequence
          Length = 1061

 Score =  287 bits (145), Expect = 2e-74
 Identities = 375/452 (82%), Gaps = 6/452 (1%)
 Strand = Plus / Plus

                                                                       
Query: 249 cggacctgaatggattggtacaccgatgatgtggcagcagcacaaggctgattcagatcc 308
           |||||||||||||||||| |||||||      ||  ||||||||||| || || ||||| 
Sbjct: 179 cggacctgaatggattggaacaccga------ggtggcagcacaaggttggtttagatca 232

                                                                       
Query: 309 gagtcggcgacgaccaagacggagtccccaggtttcactgaacccttggacttgaggagc 368
           || || |  || |||||||| | ||| || ||||||||||||||||| ||| | |  || 
Sbjct: 233 gaatctgataccaccaagaccgtgtctccgggtttcactgaacccttcgacctcatcagg 292

                                                                       
Query: 369 ttgatggtttgcttgaagttatcgtccatgttatttgacagcgggagctggagcgggatc 428
            |||||||||  ||||||||||| |||||| |||||||||  || || || || || |||
Sbjct: 293 ctgatggttttgttgaagttatcctccatgctatttgacaatggtagatgaagtggaatc 352

                                                                       
Query: 429 acaccccagtaaaggttcatgctctttctcgtgttggcgtcatcggtgaacgcaaagatg 488
           || |||||||| ||||||||||||||||| |  ||||| | ||| |||||||| || |||
Sbjct: 353 actccccagtagaggttcatgctctttcttgaattggcattatcagtgaacgcgaatatg 412

                                                                       
Query: 489 ggagggttgggccggttgcgtgataggagcgacgccatgtggccatgctttgtgtagacg 548
           ||||||||||| |||||||| ||||| || || |||||||| ||||||||||||||||| 
Sbjct: 413 ggagggttgggtcggttgcgcgatagaagtgatgccatgtgaccatgctttgtgtagaca 472

                                                                       
Query: 549 aagatggcgtccacggcaaggttgttcgccatttccacagcactgatgcaaatctgctcc 608
           || ||||| ||||| ||||||||||| |||||||| ||||||| | ||||||||||||| 
Sbjct: 473 aatatggcatccacagcaaggttgtttgccatttctacagcacagctgcaaatctgctct 532

                                                                       
Query: 609 gaaatccggtcaggcagggctattgcaagctgatattgcggaagaagtcgttgcatgttt 668
           || |||||||||||||  || |||||||||||||   | |||||||||   |||||||||
Sbjct: 533 gagatccggtcaggcaatgcaattgcaagctgatgccgtggaagaagtttctgcatgttt 592

                                           
Query: 669 tcctcacggctccatgattccatcctctcact 700
           |||||||||||||||||||||||||| |||||
Sbjct: 593 tcctcacggctccatgattccatcctttcact 624



to top

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  268 bits (135), Expect = 2e-68
 Identities = 240/275 (87%)
 Strand = Plus / Plus

                                                                            
Query: 300      ttcagatccgagtcggcgacgaccaagacggagtccccaggtttcactgaacccttggac 359
                |||||||| |||||||||||||||||||| | ||| |||| ||||||||||||||| |||
Sbjct: 26235581 ttcagatcagagtcggcgacgaccaagactgtgtctccagatttcactgaacccttcgac 26235640

                                                                            
Query: 360      ttgaggagcttgatggtttgcttgaagttatcgtccatgttatttgacagcgggagctgg 419
                || |  |||||||||||||| ||||||||||| ||||||||||||||||| || ||||| 
Sbjct: 26235641 ttcataagcttgatggtttgattgaagttatcttccatgttatttgacagtggtagctga 26235700

                                                                            
Query: 420      agcgggatcacaccccagtaaaggttcatgctctttctcgtgttggcgtcatcggtgaac 479
                || || || || |||||||| ||||||||||||||||| | |||||| | ||| ||||| 
Sbjct: 26235701 agtggaattactccccagtagaggttcatgctctttcttgagttggcattatcagtgaaa 26235760

                                                                            
Query: 480      gcaaagatgggagggttgggccggttgcgtgataggagcgacgccatgtggccatgcttt 539
                ||||| ||||||||||||||||||||||| || || |||||||||||||| |||| ||||
Sbjct: 26235761 gcaaaaatgggagggttgggccggttgcgcgaaagaagcgacgccatgtgaccatacttt 26235820

                                                   
Query: 540      gtgtagacgaagatggcgtccacggcaaggttgtt 574
                ||||| || |||||||| ||||| |||||||||||
Sbjct: 26235821 gtgtaaacaaagatggcatccaccgcaaggttgtt 26235855



 Score =  139 bits (70), Expect = 1e-29
 Identities = 115/130 (88%)
 Strand = Plus / Plus

                                                                            
Query: 577      ccatttccacagcactgatgcaaatctgctccgaaatccggtcaggcagggctattgcaa 636
                |||||||  |||||||| ||||||| ||||| || ||||  |||||||  ||||||||||
Sbjct: 26235986 ccatttctgcagcactggtgcaaatttgctctgagatcctatcaggcaaagctattgcaa 26236045

                                                                            
Query: 637      gctgatattgcggaagaagtcgttgcatgttttcctcacggctccatgattccatcctct 696
                |||||| ||| |||||||||   |||||||||||||||||||||||||||||||||||||
Sbjct: 26236046 gctgatgttgtggaagaagtttctgcatgttttcctcacggctccatgattccatcctct 26236105

                          
Query: 697      cactagcagc 706
                ||||||||||
Sbjct: 26236106 cactagcagc 26236115



 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 353      cttggacttgaggagcttgatg 374
                ||||||||||||||||||||||
Sbjct: 33287942 cttggacttgaggagcttgatg 33287921



to top

>gb|AC116369.5| Oryza sativa chromosome 3 BAC OSJNBb0113I20 genomic sequence, complete
             sequence
          Length = 122939

 Score =  268 bits (135), Expect = 2e-68
 Identities = 240/275 (87%)
 Strand = Plus / Plus

                                                                         
Query: 300   ttcagatccgagtcggcgacgaccaagacggagtccccaggtttcactgaacccttggac 359
             |||||||| |||||||||||||||||||| | ||| |||| ||||||||||||||| |||
Sbjct: 65040 ttcagatcagagtcggcgacgaccaagactgtgtctccagatttcactgaacccttcgac 65099

                                                                         
Query: 360   ttgaggagcttgatggtttgcttgaagttatcgtccatgttatttgacagcgggagctgg 419
             || |  |||||||||||||| ||||||||||| ||||||||||||||||| || ||||| 
Sbjct: 65100 ttcataagcttgatggtttgattgaagttatcttccatgttatttgacagtggtagctga 65159

                                                                         
Query: 420   agcgggatcacaccccagtaaaggttcatgctctttctcgtgttggcgtcatcggtgaac 479
             || || || || |||||||| ||||||||||||||||| | |||||| | ||| ||||| 
Sbjct: 65160 agtggaattactccccagtagaggttcatgctctttcttgagttggcattatcagtgaaa 65219

                                                                         
Query: 480   gcaaagatgggagggttgggccggttgcgtgataggagcgacgccatgtggccatgcttt 539
             ||||| ||||||||||||||||||||||| || || |||||||||||||| |||| ||||
Sbjct: 65220 gcaaaaatgggagggttgggccggttgcgcgaaagaagcgacgccatgtgaccatacttt 65279

                                                
Query: 540   gtgtagacgaagatggcgtccacggcaaggttgtt 574
             ||||| || |||||||| ||||| |||||||||||
Sbjct: 65280 gtgtaaacaaagatggcatccaccgcaaggttgtt 65314



 Score =  139 bits (70), Expect = 1e-29
 Identities = 115/130 (88%)
 Strand = Plus / Plus

                                                                         
Query: 577   ccatttccacagcactgatgcaaatctgctccgaaatccggtcaggcagggctattgcaa 636
             |||||||  |||||||| ||||||| ||||| || ||||  |||||||  ||||||||||
Sbjct: 65445 ccatttctgcagcactggtgcaaatttgctctgagatcctatcaggcaaagctattgcaa 65504

                                                                         
Query: 637   gctgatattgcggaagaagtcgttgcatgttttcctcacggctccatgattccatcctct 696
             |||||| ||| |||||||||   |||||||||||||||||||||||||||||||||||||
Sbjct: 65505 gctgatgttgtggaagaagtttctgcatgttttcctcacggctccatgattccatcctct 65564

                       
Query: 697   cactagcagc 706
             ||||||||||
Sbjct: 65565 cactagcagc 65574



to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  268 bits (135), Expect = 2e-68
 Identities = 240/275 (87%)
 Strand = Plus / Plus

                                                                            
Query: 300      ttcagatccgagtcggcgacgaccaagacggagtccccaggtttcactgaacccttggac 359
                |||||||| |||||||||||||||||||| | ||| |||| ||||||||||||||| |||
Sbjct: 26326890 ttcagatcagagtcggcgacgaccaagactgtgtctccagatttcactgaacccttcgac 26326949

                                                                            
Query: 360      ttgaggagcttgatggtttgcttgaagttatcgtccatgttatttgacagcgggagctgg 419
                || |  |||||||||||||| ||||||||||| ||||||||||||||||| || ||||| 
Sbjct: 26326950 ttcataagcttgatggtttgattgaagttatcttccatgttatttgacagtggtagctga 26327009

                                                                            
Query: 420      agcgggatcacaccccagtaaaggttcatgctctttctcgtgttggcgtcatcggtgaac 479
                || || || || |||||||| ||||||||||||||||| | |||||| | ||| ||||| 
Sbjct: 26327010 agtggaattactccccagtagaggttcatgctctttcttgagttggcattatcagtgaaa 26327069

                                                                            
Query: 480      gcaaagatgggagggttgggccggttgcgtgataggagcgacgccatgtggccatgcttt 539
                ||||| ||||||||||||||||||||||| || || |||||||||||||| |||| ||||
Sbjct: 26327070 gcaaaaatgggagggttgggccggttgcgcgaaagaagcgacgccatgtgaccatacttt 26327129

                                                   
Query: 540      gtgtagacgaagatggcgtccacggcaaggttgtt 574
                ||||| || |||||||| ||||| |||||||||||
Sbjct: 26327130 gtgtaaacaaagatggcatccaccgcaaggttgtt 26327164



 Score =  139 bits (70), Expect = 1e-29
 Identities = 115/130 (88%)
 Strand = Plus / Plus

                                                                            
Query: 577      ccatttccacagcactgatgcaaatctgctccgaaatccggtcaggcagggctattgcaa 636
                |||||||  |||||||| ||||||| ||||| || ||||  |||||||  ||||||||||
Sbjct: 26327295 ccatttctgcagcactggtgcaaatttgctctgagatcctatcaggcaaagctattgcaa 26327354

                                                                            
Query: 637      gctgatattgcggaagaagtcgttgcatgttttcctcacggctccatgattccatcctct 696
                |||||| ||| |||||||||   |||||||||||||||||||||||||||||||||||||
Sbjct: 26327355 gctgatgttgtggaagaagtttctgcatgttttcctcacggctccatgattccatcctct 26327414

                          
Query: 697      cactagcagc 706
                ||||||||||
Sbjct: 26327415 cactagcagc 26327424



 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 353      cttggacttgaggagcttgatg 374
                ||||||||||||||||||||||
Sbjct: 33378452 cttggacttgaggagcttgatg 33378431



to top

>ref|XM_470004.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 678

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 353 cttggacttgaggagcttgatg 374
           ||||||||||||||||||||||
Sbjct: 672 cttggacttgaggagcttgatg 651



to top

>gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 genomic sequence, complete
             sequence
          Length = 122815

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 353   cttggacttgaggagcttgatg 374
             ||||||||||||||||||||||
Sbjct: 44458 cttggacttgaggagcttgatg 44437



to top

>gb|AY386265.1| Bovine papular stomatitis virus strain BV-AR02, complete genome
          Length = 134431

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 408    agcgggagctggagcgggatca 429
              ||||||||||||||||||||||
Sbjct: 116790 agcgggagctggagcgggatca 116769



to top

>gb|AC100600.22| Mus musculus chromosome 9, clone RP23-157H17, complete sequence
          Length = 225538

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 163    atgcatgcacaaatacacaaa 183
              |||||||||||||||||||||
Sbjct: 131357 atgcatgcacaaatacacaaa 131337



to top

>emb|BX571774.9| Zebrafish DNA sequence from clone DKEY-250A19 in linkage group 9,
              complete sequence
          Length = 140812

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 577    ccatttccacagcactgatgc 597
              |||||||||||||||||||||
Sbjct: 123056 ccatttccacagcactgatgc 123036



to top

>emb|BX088727.14| Zebrafish DNA sequence from clone DKEY-218A22 in linkage group 2,
             complete sequence
          Length = 185178

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 125   gatcatatatctcacacactg 145
             |||||||||||||||||||||
Sbjct: 43014 gatcatatatctcacacactg 42994



to top

>ref|XM_324031.1| Neurospora crassa OR74A hypothetical protein (NCU04676.1) partial
            mRNA
          Length = 2202

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 479  cgcaaagatgggagggttgg 498
            ||||||||||||||||||||
Sbjct: 1632 cgcaaagatgggagggttgg 1613



to top

>ref|XM_954126.1| Neurospora crassa OR74A hypothetical protein (NCU04676.1) partial
            mRNA
          Length = 2202

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 479  cgcaaagatgggagggttgg 498
            ||||||||||||||||||||
Sbjct: 1632 cgcaaagatgggagggttgg 1613



to top

>emb|CR762392.5| Zebrafish DNA sequence from clone DKEY-265A11 in linkage group 8,
             complete sequence
          Length = 203490

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 166   catgcacaaatacacaaact 185
             ||||||||||||||||||||
Sbjct: 59367 catgcacaaatacacaaact 59348



to top

>gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete sequence
          Length = 3281944

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 408     agcgggagctggagcgggat 427
               ||||||||||||||||||||
Sbjct: 1692013 agcgggagctggagcgggat 1692032



to top

>gb|AC095504.7| Rattus norvegicus 2 BAC CH230-7P18 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 227012

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 164    tgcatgcacaaatacacaaa 183
              ||||||||||||||||||||
Sbjct: 206652 tgcatgcacaaatacacaaa 206633



to top

>gb|AC134407.6| Homo sapiens chromosome 17, clone RP11-855A2, complete sequence
          Length = 199875

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 167    atgcacaaatacacaaactgttct 190
              ||||||||| ||||||||||||||
Sbjct: 148794 atgcacaaacacacaaactgttct 148817



to top

>emb|BX294013.1|NCX4G11 Neurospora crassa DNA linkage group V Cosmid contig X4G11
          Length = 119154

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 479   cgcaaagatgggagggttgg 498
             ||||||||||||||||||||
Sbjct: 96448 cgcaaagatgggagggttgg 96467



to top

>emb|AL831791.5| Zebrafish DNA sequence from clone DKEY-76P14 in linkage group 11 Contains
              a novel gene similar to human and rodent RRAD (Ras-related
              protein associated with diabetes), a novel gene, a novel
              gene similar to mouse PNP (purine-nucleoside
              phosphorylase), a novel gene similar to human and rodent
              SOX11 (SRY (sex determining region Y)-box 11) and a CpG
              island, complete sequence
          Length = 204498

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 165    gcatgcacaaatacacaaac 184
              ||||||||||||||||||||
Sbjct: 153608 gcatgcacaaatacacaaac 153589



to top

>emb|CR932803.1| Mus musculus chromosome 2, clone GenSys-110A4 strain 129/Sv, complete
             sequence
          Length = 134122

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 620   aggcagggctattgcaagct 639
             ||||||||||||||||||||
Sbjct: 59189 aggcagggctattgcaagct 59208



to top

>emb|AL928860.10| Mouse DNA sequence from clone RP23-5I15 on chromosome 2, complete
             sequence
          Length = 132808

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 620   aggcagggctattgcaagct 639
             ||||||||||||||||||||
Sbjct: 50958 aggcagggctattgcaagct 50977



to top

>emb|BX571943.8| Zebrafish DNA sequence from clone DKEY-159C24 in linkage group 13,
             complete sequence
          Length = 193538

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 167   atgcacaaatacacaaactg 186
             ||||||||||||||||||||
Sbjct: 33209 atgcacaaatacacaaactg 33228



to top

>gb|AC003036.1|AC003036 Homo sapiens Xp22 PAC RPCI1-108M6 (Roswell Park Cancer Center PAC
             library) complete sequence
          Length = 123203

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   acagttttcatggagatcaa 121
             ||||||||||||||||||||
Sbjct: 14047 acagttttcatggagatcaa 14028



to top

>gb|AC123759.7| Mus musculus chromosome 3, clone RP24-303I14, complete sequence
          Length = 189387

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 162   aatgcatgcacaaatacaca 181
             ||||||||||||||||||||
Sbjct: 54749 aatgcatgcacaaatacaca 54730



to top

>gb|AC102467.6| Mus musculus chromosome 1, clone RP24-348G21, complete sequence
          Length = 167344

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 162   aatgcatgcacaaatacaca 181
             ||||||||||||||||||||
Sbjct: 50107 aatgcatgcacaaatacaca 50126


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,776,544
Number of Sequences: 3902068
Number of extensions: 4776544
Number of successful extensions: 87967
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87760
Number of HSP's gapped (non-prelim): 207
length of query: 711
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 688
effective length of database: 17,143,297,704
effective search space: 11794588820352
effective search space used: 11794588820352
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top