ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags37f24 |
|---|---|
| Clone Library Name | barley_pub |
>RL23A_TOBAC (Q07761) 60S ribosomal protein L23a (L25)| Length = 154 Score = 187 bits (476), Expect = 2e-47 Identities = 98/128 (76%), Positives = 103/128 (80%), Gaps = 1/128 (0%) Frame = -1 Query: 531 SGS-IKKTAKKIRTSVTFHRPKTLSKARDPKYPRISTPGRNKLDQYQILKYPLTTESAMK 355 SGS +KK ++KIRT VTFHRPKTL K R+PKYPRIS PGRNKLDQY ILKYPLTTESAMK Sbjct: 27 SGSTLKKKSQKIRTKVTFHRPKTLKKDRNPKYPRISAPGRNKLDQYGILKYPLTTESAMK 86 Query: 354 KIEDNNTLVFXXXXXXXXXXXXXXXXKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALD 175 KIEDNNTLVF KMYDIQ KKVNTLIRPDG KKAYV+LTPDYDALD Sbjct: 87 KIEDNNTLVFIVDIKADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALD 146 Query: 174 VANKIGII 151 VANKIGII Sbjct: 147 VANKIGII 154
>RL23A_FRIAG (O22644) 60S ribosomal protein L23A| Length = 154 Score = 187 bits (476), Expect = 2e-47 Identities = 95/125 (76%), Positives = 101/125 (80%) Frame = -1 Query: 525 SIKKTAKKIRTSVTFHRPKTLSKARDPKYPRISTPGRNKLDQYQILKYPLTTESAMKKIE 346 +++K AKKIRTSVTFHRPKTL K R+PKYPRIS P RNKLD YQILKYPLTTESAMKKIE Sbjct: 30 TLQKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIE 89 Query: 345 DNNTLVFXXXXXXXXXXXXXXXXKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVAN 166 DNNTLVF KMYDIQ KKVNTLIRPDG KKAYV+LTPDYDALD+AN Sbjct: 90 DNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDIAN 149 Query: 165 KIGII 151 KIGII Sbjct: 150 KIGII 154
>RL23A_DAUCA (Q9AT35) 60S ribosomal protein L23a| Length = 154 Score = 184 bits (466), Expect = 2e-46 Identities = 97/128 (75%), Positives = 102/128 (79%), Gaps = 1/128 (0%) Frame = -1 Query: 531 SGSIK-KTAKKIRTSVTFHRPKTLSKARDPKYPRISTPGRNKLDQYQILKYPLTTESAMK 355 SG+ K K KKIRTSVTFHRP+TL+K R+PKYPRIS RNKLDQYQILKYPLTTESAMK Sbjct: 27 SGTTKFKKVKKIRTSVTFHRPRTLTKDRNPKYPRISATPRNKLDQYQILKYPLTTESAMK 86 Query: 354 KIEDNNTLVFXXXXXXXXXXXXXXXXKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALD 175 KIEDNNTLVF KMYDIQ KKVNTLIRPDG KKAYV+LTPDYDALD Sbjct: 87 KIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALD 146 Query: 174 VANKIGII 151 VANKIGII Sbjct: 147 VANKIGII 154
>RL23B_ARATH (Q9M3C3) 60S ribosomal protein L23a-2| Length = 154 Score = 181 bits (458), Expect = 2e-45 Identities = 93/124 (75%), Positives = 97/124 (78%) Frame = -1 Query: 522 IKKTAKKIRTSVTFHRPKTLSKARDPKYPRISTPGRNKLDQYQILKYPLTTESAMKKIED 343 +KK AKKIRT VTFHRPKTL+ R PKYP+IS RNKLD YQILKYPLTTESAMKKIED Sbjct: 31 VKKPAKKIRTKVTFHRPKTLTVPRKPKYPKISATPRNKLDHYQILKYPLTTESAMKKIED 90 Query: 342 NNTLVFXXXXXXXXXXXXXXXXKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANK 163 NNTLVF KMYDIQ KKVNTLIRPDG KKAYV+LTPDYDALDVANK Sbjct: 91 NNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANK 150 Query: 162 IGII 151 IGII Sbjct: 151 IGII 154
>RL23A_ARATH (Q8LD46) 60S ribosomal protein L23a-1 (AtRPL23A-1)| Length = 154 Score = 177 bits (448), Expect = 3e-44 Identities = 92/125 (73%), Positives = 96/125 (76%) Frame = -1 Query: 525 SIKKTAKKIRTSVTFHRPKTLSKARDPKYPRISTPGRNKLDQYQILKYPLTTESAMKKIE 346 + KK KKIRT VTFHRPKTL+K R KYP+IS RNKLD YQILKYPLTTESAMKKIE Sbjct: 30 AFKKKDKKIRTKVTFHRPKTLTKPRTGKYPKISATPRNKLDHYQILKYPLTTESAMKKIE 89 Query: 345 DNNTLVFXXXXXXXXXXXXXXXXKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVAN 166 DNNTLVF KMYDIQ KKVNTLIRPDG KKAYV+LTPDYDALDVAN Sbjct: 90 DNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVAN 149 Query: 165 KIGII 151 KIGII Sbjct: 150 KIGII 154
>RL23A_RAT (P62752) 60S ribosomal protein L23a| Length = 156 Score = 160 bits (406), Expect = 2e-39 Identities = 83/119 (69%), Positives = 88/119 (73%) Frame = -1 Query: 507 KKIRTSVTFHRPKTLSKARDPKYPRISTPGRNKLDQYQILKYPLTTESAMKKIEDNNTLV 328 KKIRTS TF RPKTL R PKYPR S P RNKLD Y I+K+PLTTESAMKKIEDNNTLV Sbjct: 38 KKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLV 97 Query: 327 FXXXXXXXXXXXXXXXXKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANKIGII 151 F K+YDI KVNTLIRPDG+KKAYV+L PDYDALDVANKIGII Sbjct: 98 FIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156
>RL23A_MOUSE (P62751) 60S ribosomal protein L23a| Length = 156 Score = 160 bits (406), Expect = 2e-39 Identities = 83/119 (69%), Positives = 88/119 (73%) Frame = -1 Query: 507 KKIRTSVTFHRPKTLSKARDPKYPRISTPGRNKLDQYQILKYPLTTESAMKKIEDNNTLV 328 KKIRTS TF RPKTL R PKYPR S P RNKLD Y I+K+PLTTESAMKKIEDNNTLV Sbjct: 38 KKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLV 97 Query: 327 FXXXXXXXXXXXXXXXXKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANKIGII 151 F K+YDI KVNTLIRPDG+KKAYV+L PDYDALDVANKIGII Sbjct: 98 FIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156
>RL23A_HUMAN (P62750) 60S ribosomal protein L23a| Length = 156 Score = 160 bits (406), Expect = 2e-39 Identities = 83/119 (69%), Positives = 88/119 (73%) Frame = -1 Query: 507 KKIRTSVTFHRPKTLSKARDPKYPRISTPGRNKLDQYQILKYPLTTESAMKKIEDNNTLV 328 KKIRTS TF RPKTL R PKYPR S P RNKLD Y I+K+PLTTESAMKKIEDNNTLV Sbjct: 38 KKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLV 97 Query: 327 FXXXXXXXXXXXXXXXXKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANKIGII 151 F K+YDI KVNTLIRPDG+KKAYV+L PDYDALDVANKIGII Sbjct: 98 FIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156
>RL25_PUCGR (P51997) 60S ribosomal protein L25| Length = 158 Score = 144 bits (364), Expect = 2e-34 Identities = 73/126 (57%), Positives = 88/126 (69%) Frame = -1 Query: 528 GSIKKTAKKIRTSVTFHRPKTLSKARDPKYPRISTPGRNKLDQYQILKYPLTTESAMKKI 349 G+ KT ++IRTSVTF RPKTL +R PKYPR S P ++D Y+ L PL TESAMKKI Sbjct: 33 GTSSKTQRRIRTSVTFRRPKTLRLSRKPKYPRTSVPHAPRMDAYRTLVRPLNTESAMKKI 92 Query: 348 EDNNTLVFXXXXXXXXXXXXXXXXKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVA 169 EDNNTL+F K+YD+ +VNTLIRPDGKKKA+V+LTP+ DALD+A Sbjct: 93 EDNNTLLFIVDLKANKRQIADAVKKLYDVTPLRVNTLIRPDGKKKAFVRLTPEVDALDIA 152 Query: 168 NKIGII 151 NKIG I Sbjct: 153 NKIGFI 158
>RL25B_SCHPO (O74391) 60S ribosomal protein L25-B| Length = 141 Score = 134 bits (336), Expect = 3e-31 Identities = 68/126 (53%), Positives = 86/126 (68%) Frame = -1 Query: 528 GSIKKTAKKIRTSVTFHRPKTLSKARDPKYPRISTPGRNKLDQYQILKYPLTTESAMKKI 349 G K A+K+RTS TF RPKTL AR PKY R S P ++LD+Y+I+ P+ +ESAMKKI Sbjct: 16 GIHNKVARKVRTSTTFRRPKTLELARKPKYARKSVPHASRLDEYKIIVNPINSESAMKKI 75 Query: 348 EDNNTLVFXXXXXXXXXXXXXXXXKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVA 169 ED+NTLVF K+Y + A K+NTLIRP+G KKA+VKL+ D DALDVA Sbjct: 76 EDDNTLVFHVHLKANKFTIKNAVKKLYSVDAVKINTLIRPNGTKKAFVKLSADADALDVA 135 Query: 168 NKIGII 151 N+IG + Sbjct: 136 NRIGFL 141
>R23A2_CAEEL (Q20647) 60S ribosomal protein L23a 2| Length = 146 Score = 132 bits (331), Expect = 1e-30 Identities = 69/126 (54%), Positives = 83/126 (65%) Frame = -1 Query: 528 GSIKKTAKKIRTSVTFHRPKTLSKARDPKYPRISTPGRNKLDQYQILKYPLTTESAMKKI 349 GS K +RTSV F RPKTL AR P+Y R S P R+KLD + ++K P TTES+MKKI Sbjct: 21 GSKTNVRKNVRTSVHFRRPKTLVTARAPRYARKSAPARDKLDSFAVIKAPHTTESSMKKI 80 Query: 348 EDNNTLVFXXXXXXXXXXXXXXXXKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVA 169 ED+NTLVF +Y+++A KVNTLI P +KKAYV+L DYDALDVA Sbjct: 81 EDHNTLVFIVDEKANKHHIKRAVHALYNVKAVKVNTLITPLQQKKAYVRLASDYDALDVA 140 Query: 168 NKIGII 151 NKIG I Sbjct: 141 NKIGFI 146
>R23A1_CAEEL (P48162) 60S ribosomal protein L23a 1| Length = 147 Score = 130 bits (328), Expect = 2e-30 Identities = 66/119 (55%), Positives = 86/119 (72%) Frame = -1 Query: 507 KKIRTSVTFHRPKTLSKARDPKYPRISTPGRNKLDQYQILKYPLTTESAMKKIEDNNTLV 328 +++RTSV F RP TL AR ++PR S P +K+D ++I+++PLTTESAMKKIE++NTLV Sbjct: 29 RQVRTSVHFRRPVTLKTARQARFPRKSAPKTSKMDHFRIIQHPLTTESAMKKIEEHNTLV 88 Query: 327 FXXXXXXXXXXXXXXXXKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANKIGII 151 F K+Y++QA KVNTLI P +KKAYV+LT DYDALDVANKIG+I Sbjct: 89 FIVSNDANKYQIKDAVHKLYNVQALKVNTLITPLQQKKAYVRLTADYDALDVANKIGVI 147
>RL25_YEAST (P04456) 60S ribosomal protein L25 (YL25) (RP61L)| Length = 141 Score = 130 bits (326), Expect = 4e-30 Identities = 63/126 (50%), Positives = 84/126 (66%) Frame = -1 Query: 528 GSIKKTAKKIRTSVTFHRPKTLSKARDPKYPRISTPGRNKLDQYQILKYPLTTESAMKKI 349 G+ K A K+RTS TF PKTL AR PKY + P N+LD Y++++ P+T+E+AMKK+ Sbjct: 16 GTNGKKALKVRTSATFRLPKTLKLARAPKYASKAVPHYNRLDSYKVIEQPITSETAMKKV 75 Query: 348 EDNNTLVFXXXXXXXXXXXXXXXXKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVA 169 ED N LVF ++Y++ KVNTL+RP+G KKAYV+LT DYDALD+A Sbjct: 76 EDGNILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIA 135 Query: 168 NKIGII 151 N+IG I Sbjct: 136 NRIGYI 141
>RL25A_SCHPO (Q10330) 60S ribosomal protein L25-A| Length = 141 Score = 128 bits (322), Expect = 1e-29 Identities = 66/126 (52%), Positives = 84/126 (66%) Frame = -1 Query: 528 GSIKKTAKKIRTSVTFHRPKTLSKARDPKYPRISTPGRNKLDQYQILKYPLTTESAMKKI 349 G K AKK+RTS TF RPKTL +R PKY R S +LD+Y+I+ P+ +ESAMKKI Sbjct: 16 GIHNKVAKKVRTSTTFRRPKTLQLSRKPKYARKSVAHAPRLDEYKIIVNPINSESAMKKI 75 Query: 348 EDNNTLVFXXXXXXXXXXXXXXXXKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVA 169 ED+NTLVF K+Y ++ K+NTLIRP+G KKA+VKL+ D DALDVA Sbjct: 76 EDDNTLVFHVHLKANKFTIKEAVRKLYSVEPVKINTLIRPNGTKKAFVKLSADADALDVA 135 Query: 168 NKIGII 151 N+IG + Sbjct: 136 NRIGFL 141
>RL25_KLULA (P48045) 60S ribosomal protein L25| Length = 142 Score = 128 bits (321), Expect = 2e-29 Identities = 61/126 (48%), Positives = 84/126 (66%) Frame = -1 Query: 528 GSIKKTAKKIRTSVTFHRPKTLSKARDPKYPRISTPGRNKLDQYQILKYPLTTESAMKKI 349 G+ K A K+RTS +F PKTL AR PKY + P N+LD Y++++ P+T+E+AMKK+ Sbjct: 17 GTNGKKALKVRTSASFRLPKTLKLARSPKYATKAVPHYNRLDSYKVIEQPITSETAMKKV 76 Query: 348 EDNNTLVFXXXXXXXXXXXXXXXXKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVA 169 ED NTLVF ++Y++ VNTL+RP+G KKAYV+LT D+DALD+A Sbjct: 77 EDGNTLVFKVSLKANKYQIKKAVKELYEVDVLSVNTLVRPNGTKKAYVRLTADFDALDIA 136 Query: 168 NKIGII 151 N+IG I Sbjct: 137 NRIGYI 142
>RL25_PICJA (P08792) 60S ribosomal protein L25| Length = 142 Score = 123 bits (309), Expect = 4e-28 Identities = 62/126 (49%), Positives = 79/126 (62%) Frame = -1 Query: 528 GSIKKTAKKIRTSVTFHRPKTLSKARDPKYPRISTPGRNKLDQYQILKYPLTTESAMKKI 349 GS A K+RTS TF PKTL R PKY R + P +LD Y+++ P+ +E+AMKK+ Sbjct: 17 GSNGSKALKVRTSTTFRLPKTLKLTRAPKYARKAVPHYQRLDNYKVIVAPIASETAMKKV 76 Query: 348 EDNNTLVFXXXXXXXXXXXXXXXXKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVA 169 ED NTLVF +Y++ VNTLIRP+G KKAYV+LT D+DALD+A Sbjct: 77 EDGNTLVFQVDIKANKHQIKQAVKDLYEVDVLAVNTLIRPNGTKKAYVRLTADHDALDIA 136 Query: 168 NKIGII 151 NKIG I Sbjct: 137 NKIGYI 142
>RL23A_TRYBB (P41165) 60S ribosomal protein L23a (L25)| Length = 164 Score = 108 bits (270), Expect = 1e-23 Identities = 55/124 (44%), Positives = 75/124 (60%) Frame = -1 Query: 522 IKKTAKKIRTSVTFHRPKTLSKARDPKYPRISTPGRNKLDQYQILKYPLTTESAMKKIED 343 +K T +K T F RP T + K + +NK D ++I++YPLTT+ AMKKIE+ Sbjct: 41 VKVTKRKAYTRPQFRRPHTYRRPATVKPSSNVSAIKNKWDAFRIIRYPLTTDKAMKKIEE 100 Query: 342 NNTLVFXXXXXXXXXXXXXXXXKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANK 163 NNTL F K+Y ++ KVNTLIRPDG KKAY++L+ YDALD ANK Sbjct: 101 NNTLTFIVDSRANKTEIKKAIRKLYQVKTVKVNTLIRPDGLKKAYIRLSASYDALDTANK 160 Query: 162 IGII 151 +G++ Sbjct: 161 MGLV 164
>RL23_METJA (P54016) 50S ribosomal protein L23P| Length = 86 Score = 71.2 bits (173), Expect = 2e-12 Identities = 33/85 (38%), Positives = 50/85 (58%) Frame = -1 Query: 408 LDQYQILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXKMYDIQAKKVNTLIRP 229 +D + ++K P+ TE ++ IE+ N LVF +++D++ +KVNTLI P Sbjct: 1 MDAFDVIKAPVVTEKTVRMIEEENKLVFYVDRRATKQDIKRAMKELFDVEVEKVNTLITP 60 Query: 228 DGKKKAYVKLTPDYDALDVANKIGI 154 G+KKAYVKL YDA +A +GI Sbjct: 61 KGEKKAYVKLKEGYDASKIAASLGI 85
>RL23_PYRHO (O74095) 50S ribosomal protein L23P| Length = 86 Score = 68.6 bits (166), Expect = 2e-11 Identities = 31/85 (36%), Positives = 51/85 (60%) Frame = -1 Query: 408 LDQYQILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXKMYDIQAKKVNTLIRP 229 +D Y+++ P+ TE A+ IE N L F ++++++ +KVNTLI P Sbjct: 1 MDPYKVIIRPVVTEKAISLIEKENKLTFIVDRRATKTDIKKAIEEIFNVKVEKVNTLITP 60 Query: 228 DGKKKAYVKLTPDYDALDVANKIGI 154 G+KKAYVKL P+Y A ++A ++G+ Sbjct: 61 KGEKKAYVKLKPEYSASEIAARLGL 85
>RL23_PYRAB (Q9V1T7) 50S ribosomal protein L23P| Length = 86 Score = 66.6 bits (161), Expect = 6e-11 Identities = 30/85 (35%), Positives = 51/85 (60%) Frame = -1 Query: 408 LDQYQILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXKMYDIQAKKVNTLIRP 229 +D Y+++ P+ T+ A+ IE N L F ++++++ +KVNTLI P Sbjct: 1 MDPYKVIIRPVITDKAISLIEKENKLTFIVDRRATKQDIKRAIEEIFNVKVEKVNTLITP 60 Query: 228 DGKKKAYVKLTPDYDALDVANKIGI 154 G+KKAYVKL P+Y A ++A ++G+ Sbjct: 61 KGEKKAYVKLKPEYSASEIAARLGL 85
>RL23_METVA (P10143) 50S ribosomal protein L23P (ML7)| Length = 86 Score = 63.5 bits (153), Expect = 5e-10 Identities = 30/85 (35%), Positives = 49/85 (57%) Frame = -1 Query: 408 LDQYQILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXKMYDIQAKKVNTLIRP 229 +D + ++K P+ +E MK IE+ N LVF ++++ + +VNT I P Sbjct: 1 MDAFDVIKTPIVSEKTMKLIEEENRLVFYVERKATKEDIKEAIKQLFNAEVAEVNTNITP 60 Query: 228 DGKKKAYVKLTPDYDALDVANKIGI 154 G+KKAY+KL +Y+A +VA +GI Sbjct: 61 KGQKKAYIKLKDEYNAGEVAASLGI 85
>RL23_AERPE (Q9YFM0) 50S ribosomal protein L23P| Length = 68 Score = 58.9 bits (141), Expect = 1e-08 Identities = 28/67 (41%), Positives = 39/67 (58%) Frame = -1 Query: 351 IEDNNTLVFXXXXXXXXXXXXXXXXKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDV 172 +E+ NTL F +++ ++ +KV TLI P G KKAYVKL P+Y ALDV Sbjct: 2 LEEENTLTFIVRREATKNDVKRAVEQLFGVKVEKVRTLITPRGYKKAYVKLAPEYKALDV 61 Query: 171 ANKIGII 151 A K+G + Sbjct: 62 ATKLGAV 68
>RL23_METTH (O26112) 50S ribosomal protein L23P| Length = 100 Score = 57.8 bits (138), Expect = 3e-08 Identities = 26/85 (30%), Positives = 46/85 (54%) Frame = -1 Query: 408 LDQYQILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXKMYDIQAKKVNTLIRP 229 +D Y ++ P TE +M I+ NN L F +++ ++ ++VNT + P Sbjct: 15 MDPYAVIMKPHVTEKSMNLIDQNNELAFVVMRKSTKKDVRRAFEELFAVKVERVNTQVTP 74 Query: 228 DGKKKAYVKLTPDYDALDVANKIGI 154 G+K AY+KL ++ A D+A K+G+ Sbjct: 75 RGQKIAYIKLAKEHSAEDIAVKLGV 99
>RL23_HALSA (Q06842) 50S ribosomal protein L23P| Length = 83 Score = 57.8 bits (138), Expect = 3e-08 Identities = 31/80 (38%), Positives = 43/80 (53%) Frame = -1 Query: 393 ILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXKMYDIQAKKVNTLIRPDGKKK 214 I+ YPL TE AM +++ N L F YD+ VNT I P+ +KK Sbjct: 3 IIDYPLVTEKAMDEMDFQNKLQFIVDIDAAKPEIRDVVESEYDVTVVDVNTQITPEAEKK 62 Query: 213 AYVKLTPDYDALDVANKIGI 154 A VKL+ + DA DVA++IG+ Sbjct: 63 ATVKLSAEDDAQDVASRIGV 82
>RL23_HALMA (P12732) 50S ribosomal protein L23P (Hmal23) (Hl25) (L21)| Length = 84 Score = 56.2 bits (134), Expect = 8e-08 Identities = 28/82 (34%), Positives = 45/82 (54%) Frame = -1 Query: 399 YQILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXKMYDIQAKKVNTLIRPDGK 220 + ++K+P TE AM ++ N L F + YD+ ++VNT DG+ Sbjct: 2 WDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGE 61 Query: 219 KKAYVKLTPDYDALDVANKIGI 154 KKA V+L+ D DA +VA++IG+ Sbjct: 62 KKAVVRLSEDDDAQEVASRIGV 83
>RL23_ARCFU (O28356) 50S ribosomal protein L23P| Length = 83 Score = 54.3 bits (129), Expect = 3e-07 Identities = 27/80 (33%), Positives = 47/80 (58%) Frame = -1 Query: 393 ILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXKMYDIQAKKVNTLIRPDGKKK 214 ++K L TE ++ ++E N L K+++++ ++VNTLI P G+KK Sbjct: 4 LIKCFLVTEKSVAELE-KNVLTAIVDMRARKEHIKKEIEKLFNVEVERVNTLITPKGEKK 62 Query: 213 AYVKLTPDYDALDVANKIGI 154 AY+KL PDY A ++ +K+G+ Sbjct: 63 AYIKLKPDYSAEEILSKLGV 82
>RL23_AQUAE (O66433) 50S ribosomal protein L23| Length = 103 Score = 34.7 bits (78), Expect = 0.24 Identities = 18/66 (27%), Positives = 33/66 (50%) Frame = -1 Query: 399 YQILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXKMYDIQAKKVNTLIRPDGK 220 ++I+ P+ TE + + +ED N F K+++++ KKVNT+I K Sbjct: 7 WEIIIRPIITEKSNRLMEDYNKYTFEVALDASKPEIKYAVEKLFNVKVKKVNTMIVKPKK 66 Query: 219 KKAYVK 202 K+ + K Sbjct: 67 KRVWNK 72
>RL23_AQUPY (Q9ZI48) 50S ribosomal protein L23| Length = 109 Score = 34.7 bits (78), Expect = 0.24 Identities = 18/64 (28%), Positives = 32/64 (50%) Frame = -1 Query: 399 YQILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXKMYDIQAKKVNTLIRPDGK 220 ++IL P+ TE + + +ED N F K+++++ KKVNT+I K Sbjct: 7 WEILIRPIITEKSNRLMEDYNKYTFEVALDASKPEIKEAVEKLFNVKVKKVNTMIVKPKK 66 Query: 219 KKAY 208 K+ + Sbjct: 67 KRVW 70
>RL23_RHOPA (Q6N4T7) 50S ribosomal protein L23 (RRP-L23)| Length = 99 Score = 32.7 bits (73), Expect = 0.92 Identities = 20/64 (31%), Positives = 32/64 (50%) Frame = -1 Query: 399 YQILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXKMYDIQAKKVNTLIRPDGK 220 Y ++ P+ TE + E +N +VF K++D++ K VNTL+R GK Sbjct: 9 YDVIVAPVVTEKSTMASE-HNKVVFKVQGGATKPQIKEAVEKLFDVKVKSVNTLVR-KGK 66 Query: 219 KKAY 208 KA+ Sbjct: 67 TKAF 70
>RL23_YERPS (P69964) 50S ribosomal protein L23| Length = 100 Score = 32.3 bits (72), Expect = 1.2 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 13/79 (16%) Frame = -1 Query: 396 QILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXKMYDIQAKKVNTLI------ 235 ++L+ P +E A +E NNT+V K+++++ + VNTL+ Sbjct: 9 KVLRSPHVSEKASAAMEKNNTIVLKVAKDATKAEIKAAVQKLFEVEVEDVNTLLVKGKSK 68 Query: 234 -------RPDGKKKAYVKL 199 R KKAYV L Sbjct: 69 RHGQRVGRRSDWKKAYVTL 87
>RL23_YERPE (P69963) 50S ribosomal protein L23| Length = 100 Score = 32.3 bits (72), Expect = 1.2 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 13/79 (16%) Frame = -1 Query: 396 QILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXKMYDIQAKKVNTLI------ 235 ++L+ P +E A +E NNT+V K+++++ + VNTL+ Sbjct: 9 KVLRSPHVSEKASAAMEKNNTIVLKVAKDATKAEIKAAVQKLFEVEVEDVNTLLVKGKSK 68 Query: 234 -------RPDGKKKAYVKL 199 R KKAYV L Sbjct: 69 RHGQRVGRRSDWKKAYVTL 87
>RL23_YEREN (P41278) 50S ribosomal protein L23| Length = 100 Score = 32.3 bits (72), Expect = 1.2 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 13/79 (16%) Frame = -1 Query: 396 QILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXKMYDIQAKKVNTLI------ 235 ++L+ P +E A +E NNT+V K+++++ + VNTL+ Sbjct: 9 KVLRAPHVSEKASAAMEKNNTIVLKVAKDATKAEIKAAVQKLFEVEVEDVNTLLVKGKSK 68 Query: 234 -------RPDGKKKAYVKL 199 R KKAYV L Sbjct: 69 RHGQRVGRRSDWKKAYVTL 87
>DHH1_CANGA (Q6FQU5) ATP-dependent RNA helicase DHH1 (EC 3.6.1.-)| Length = 507 Score = 32.0 bits (71), Expect = 1.6 Identities = 26/94 (27%), Positives = 40/94 (42%) Frame = -3 Query: 403 PIPDPQVPFDHRVCNEEDRGQQHPCLHR*PQGRQEEDQGCGKKDVRYPGQEG*HPDQAGR 224 PI DP + R+ ++ + QQ QG+Q + QG YPGQ+ P Q G+ Sbjct: 416 PIEDPHIVHQRRMQEQQQQQQQQ-------QGQQGQQQG-------YPGQQAFIPPQQGQ 461 Query: 223 QEEGLCEADTRL*CS*RGQQDRHHISQREPPAVG 122 + QQ +Q++PPA+G Sbjct: 462 PQFMPVPQQYMQ----MNQQQGMPPNQQQPPAMG 491
>BRM_DROME (P25439) Homeotic gene regulator (EC 3.6.1.-) (ATP-dependent helicase| brm) (Protein brahma) Length = 1638 Score = 31.2 bits (69), Expect = 2.7 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%) Frame = -1 Query: 519 KKTAKKIRTSVTFHRP--KTLSKARDPKYPRISTPGRNKL-DQYQILKYPLTTESAMKKI 349 KK KI ++V H +TLS+ P + P R +L D Y+I+K P+ + +++I Sbjct: 1427 KKQMHKIMSAVIKHNQDGRTLSE------PFMKLPSRQRLPDYYEIIKRPVDIKKILQRI 1480 Query: 348 ED 343 ED Sbjct: 1481 ED 1482
>RK23_ODOSI (P49559) Chloroplast 50S ribosomal protein L23| Length = 102 Score = 30.8 bits (68), Expect = 3.5 Identities = 17/60 (28%), Positives = 28/60 (46%) Frame = -1 Query: 393 ILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXKMYDIQAKKVNTLIRPDGKKK 214 I+KYP+ T+ A + +E NN F +++++ KVNT P KK+ Sbjct: 14 IIKYPIITDKATRLLE-NNQYSFIVNPYSDKITIKAAIEYLFNVKVIKVNTCHLPKKKKR 72
>RL23_SHIFL (P0ADZ3) 50S ribosomal protein L23| Length = 100 Score = 30.4 bits (67), Expect = 4.6 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 13/79 (16%) Frame = -1 Query: 396 QILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXKMYDIQAKKVNTLI------ 235 ++L+ P +E A +E +NT+V K+++++ + VNTL+ Sbjct: 9 KVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVK 68 Query: 234 -------RPDGKKKAYVKL 199 R KKAYV L Sbjct: 69 RHGQRIGRRSDWKKAYVTL 87
>RL23_ECOLI (P0ADZ0) 50S ribosomal protein L23| Length = 100 Score = 30.4 bits (67), Expect = 4.6 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 13/79 (16%) Frame = -1 Query: 396 QILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXKMYDIQAKKVNTLI------ 235 ++L+ P +E A +E +NT+V K+++++ + VNTL+ Sbjct: 9 KVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVK 68 Query: 234 -------RPDGKKKAYVKL 199 R KKAYV L Sbjct: 69 RHGQRIGRRSDWKKAYVTL 87
>RL23_ECOL6 (P0ADZ1) 50S ribosomal protein L23| Length = 100 Score = 30.4 bits (67), Expect = 4.6 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 13/79 (16%) Frame = -1 Query: 396 QILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXKMYDIQAKKVNTLI------ 235 ++L+ P +E A +E +NT+V K+++++ + VNTL+ Sbjct: 9 KVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVK 68 Query: 234 -------RPDGKKKAYVKL 199 R KKAYV L Sbjct: 69 RHGQRIGRRSDWKKAYVTL 87
>RL23_ECO57 (P0ADZ2) 50S ribosomal protein L23| Length = 100 Score = 30.4 bits (67), Expect = 4.6 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 13/79 (16%) Frame = -1 Query: 396 QILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXKMYDIQAKKVNTLI------ 235 ++L+ P +E A +E +NT+V K+++++ + VNTL+ Sbjct: 9 KVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVK 68 Query: 234 -------RPDGKKKAYVKL 199 R KKAYV L Sbjct: 69 RHGQRIGRRSDWKKAYVTL 87
>RK23_PORPU (P51312) Chloroplast 50S ribosomal protein L23| Length = 110 Score = 30.0 bits (66), Expect = 6.0 Identities = 18/76 (23%), Positives = 30/76 (39%) Frame = -1 Query: 444 KYPRISTPGRNKLDQYQILKYPLTTESAMKKIEDNNTLVFXXXXXXXXXXXXXXXXKMYD 265 KY R + D ++KYP+ T+ K +E+N F +++ Sbjct: 5 KYKRYIMDSIDSRDLLDLVKYPIITDKTTKLLEENQ-YCFAVDPNATKINIKAAIQYIFN 63 Query: 264 IQAKKVNTLIRPDGKK 217 +Q VNT P K+ Sbjct: 64 VQVTGVNTCHPPKKKR 79
>PUTP_ECOLI (P07117) Sodium/proline symporter (Proline permease)| Length = 502 Score = 29.6 bits (65), Expect = 7.8 Identities = 33/138 (23%), Positives = 63/138 (45%), Gaps = 15/138 (10%) Frame = +2 Query: 107 NHDTRAYCRRLSLTYMMPILLATSRAS*SGVSFT*AFFLPSGLI-----RVLTFLAWISY 271 +H + + RR+S+T+M+ L G+++ +G + RV LA I + Sbjct: 263 SHHSIVHARRISMTWMILCLAGAVAVGFFGIAYFNDHPALAGAVNQNAERVFIELAQILF 322 Query: 272 IFFTAALIF--FLSALRSTMKTRVLLSSIFFIADSVVKGYLR--------IWYWSSLFLP 421 + A ++ L+A+ ST+ ++L+ S I + + K +LR +W + L Sbjct: 323 NPWIAGILLSAILAAVMSTLSCQLLVCS-SAITEDLYKAFLRKHASQKELVWVGRVMVLV 381 Query: 422 GVLILGYLGSLALDRVLG 475 L+ L + +RVLG Sbjct: 382 VALVAIALAANPENRVLG 399
>WZYE_PHOLL (Q7MYM5) Putative ECA polymerase| Length = 459 Score = 29.6 bits (65), Expect = 7.8 Identities = 13/64 (20%), Positives = 31/64 (48%), Gaps = 3/64 (4%) Frame = +2 Query: 215 FFLPSGLIRVL---TFLAWISYIFFTAALIFFLSALRSTMKTRVLLSSIFFIADSVVKGY 385 FF+P+ L+ T L W+ ++ T A + + ++++ F+ +V+G+ Sbjct: 163 FFIPAMLVVYFLKPTQLRWLFFLISTVAFGILTYVVVGGTRANIIIAFALFLFIGIVRGW 222 Query: 386 LRIW 397 + +W Sbjct: 223 ITLW 226 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,157,731 Number of Sequences: 219361 Number of extensions: 1562644 Number of successful extensions: 5433 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 5024 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5428 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5881538857 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
