>BPA1_HUMAN (Q03001) Bullous pemphigoid antigen 1 isoforms 1/2/3/4/5/8 (230 kDa|
            bullous pemphigoid antigen) (BPA) (Hemidesmosomal plaque
            protein) (Dystonia musculorum protein) (Dystonin)
            (Fragment)
          Length = 3214

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 248  PFCLEPATSSSSCRGMSGLQRQHNSQ 325
            P C  P T ++SCR ++GLQ++H+ Q
Sbjct: 1901 PVC--PITQATSCRAVTGLQQEHDKQ 1924

>HTPX_BIFLO (Q8G6T7) Probable protease htpX homolog (EC 3.4.24.-)|
          Length = 306

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +3

Query: 360 VGHGILHTYSEALVARIHDVLINNVARRRSTGSGYLGHS---DGAHQRDQR 503
           +GH ++H Y+       HD+L + +A   +T   YLG+S    G   RD R
Sbjct: 133 LGHELMHVYN-------HDILTSAIASAMATVISYLGYSLMYFGGGSRDDR 176

>NU5M_PHYIN (P50366) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 5)
          Length = 664

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -2

Query: 160 FGYYVGFKWSMFTYSLFAFICLCVSSESVLFFYVDRSVESF*FVPIRINLGEF 2
           FG+Y+G K S+F  +L  F+  C+ S  +++  +    E   ++   IN G F
Sbjct: 20  FGFYIGRKGSVFITTLTTFLS-CIFSLIIIYNSITNEYEYIIYISNWINSGLF 71

>K0323_HUMAN (O15037) Protein KIAA0323|
          Length = 678

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 27/84 (32%), Positives = 32/84 (38%), Gaps = 10/84 (11%)
 Frame = +2

Query: 245 GPFCL--EPATSSSSC------RGMSGLQRQHNSQLEPYR--HYPK*SCRPWHFAYLLRS 394
           G FC+  EP  +  SC      RG S LQR HN    P R    P     PWH     R 
Sbjct: 317 GGFCVHREPPGAHGSCHRAAQSRGASLLQRLHNGNASPPRVPSPPPAPEPPWHCGD--RG 374

Query: 395 SCSTHSRRSDQQCRTSALHRQRVP 466
            C       D+  +   + R R P
Sbjct: 375 DCGDRGDVGDRGDKQQGMARGRGP 398


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,355,429
Number of Sequences: 219361
Number of extensions: 1562233
Number of successful extensions: 4012
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4011
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5196311029
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)