ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags37f19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AB223039.1| Triticum aestivum TaMDC1 mRNA for multidomain cy... 438 e-120
2gb|BT009401.1| Triticum aestivum clone wlm96.pk045.d23:fis, full... 400 e-108
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 76 8e-11
4dbj|AP001073.1| Oryza sativa (japonica cultivar-group) genomic D... 76 8e-11
5dbj|AK119511.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 8e-11
6dbj|AK104155.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 8e-11
7dbj|AK073275.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 8e-11
8ref|NM_188046.1| Oryza sativa (japonica cultivar-group), Ozsa846... 74 3e-10
9emb|AL845270.6| Mouse DNA sequence from clone RP23-186C16 on chr... 50 0.004
10tpe|BN000509.1| TPA: TPA_exp: Zea mays mRNA for putative cystati... 46 0.070
11emb|AM055633.1| Zea mays mRNA for partial putative cystatin (cc4... 46 0.070
12gb|AC116476.6| Mus musculus chromosome 15, clone RP23-387K7, com... 42 1.1
13gb|AC132935.7| Mus musculus chromosome 15, clone RP24-142P21, co... 42 1.1
14gb|AC157896.3| Mus musculus chromosome 15, clone RP23-438M9, com... 42 1.1
15dbj|AK034433.1| Mus musculus adult male diencephalon cDNA, RIKEN... 42 1.1
16dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
17gb|AC120132.11| Mus musculus chromosome 6, clone RP23-105D1, com... 42 1.1
18dbj|AP006424.1| Lotus japonicus genomic DNA, chromosome 6, clone... 42 1.1
19gb|AC159106.2| Mus musculus chromosome 14 clone RP23-244I11, com... 42 1.1
20ref|XM_873520.1| PREDICTED: Bos taurus similar to Wilms tumour 1... 40 4.3
21ref|XM_612242.2| PREDICTED: Bos taurus similar to Wilms tumour 1... 40 4.3
22ref|XM_873116.1| PREDICTED: Bos taurus similar to Wilms tumour 1... 40 4.3
23ref|XM_873010.1| PREDICTED: Bos taurus similar to Wilms tumour 1... 40 4.3
24gb|BC112754.1| Bos taurus similar to Wilms tumour 1-associating ... 40 4.3
25emb|AL158050.8| Human DNA sequence from clone RP3-437C15 on chro... 40 4.3
26emb|AL135914.25| Human DNA sequence from clone RP1-56L9 on chrom... 40 4.3
27dbj|D14661.1|HUMORF05 Homo sapiens KIAA0105 mRNA, complete cds 40 4.3
28emb|CR622276.1| full-length cDNA clone CS0DI060YM16 of Placenta ... 40 4.3
29emb|CR607182.1| full-length cDNA clone CS0DI085YO18 of Placenta ... 40 4.3
30emb|CR605059.1| full-length cDNA clone CS0DE010YD16 of Placenta ... 40 4.3
31emb|CR606450.1| full-length cDNA clone CS0DN001YM02 of Adult bra... 40 4.3
32emb|CR602734.1| full-length cDNA clone CS0DG004YF21 of B cells (... 40 4.3
33emb|CR602556.1| full-length cDNA clone CS0DH002YO11 of T cells (... 40 4.3
34emb|CR595437.1| full-length cDNA clone CS0DF021YA16 of Fetal bra... 40 4.3
35emb|BX537293.9| Zebrafish DNA sequence from clone DKEYP-40D11 in... 40 4.3
36ref|NM_152857.1| Homo sapiens Wilms tumor 1 associated protein (... 40 4.3
37ref|NM_152858.1| Homo sapiens Wilms tumor 1 associated protein (... 40 4.3
38gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 4.3

>dbj|AB223039.1| Triticum aestivum TaMDC1 mRNA for multidomain cystatin, complete
           cds
          Length = 1031

 Score =  438 bits (221), Expect = e-120
 Identities = 292/315 (92%), Gaps = 2/315 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   tgagttacgagattggttacacattccaccattaacaccaaccaagtaangttcagctat 66
           |||||||| ||||||||| |||||||||||||||||| ||||||| ||| ||||||||| 
Sbjct: 977 tgagttacaagattggttgcacattccaccattaacagcaaccaaataaggttcagcta- 919

                                                                       
Query: 67  gtaagaaacagagttccatcgtgccgcattcaacaaccaagccggtgcaggaaagcataa 126
           |||||||||| ||||||||||||   |||||||||||||||||||||||  |||||||||
Sbjct: 918 gtaagaaacatagttccatcgtgattcattcaacaaccaagccggtgcaa-aaagcataa 860

                                                                       
Query: 127 tntgcaggtagagacaggtttactgtttatttcttaatacaaactacattactgtgagct 186
           | | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 859 tatccaggtagagacaggtttactgtttatttcttagtacaaactacattactgtgagct 800

                                                                       
Query: 187 taacangtcagattcactggctgctagattcgtcatgctccggctgcatctggttcagca 246
            |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 799 caacaagtcagattcactggctgctagattcgtcatgctctggctgcatctggttcagca 740

                                                                       
Query: 247 caaaagctccctcaaggttcttatgcacctnggntttcattttctcctcctttgtccctc 306
           ||||||||||||| |||||||||||||||| || |||||||||||||||||| |||||||
Sbjct: 739 caaaagctccctcgaggttcttatgcacctcggctttcattttctcctccttggtccctc 680

                          
Query: 307 tnttcagtttcatga 321
           | |||||||||||||
Sbjct: 679 tcttcagtttcatga 665



to top

>gb|BT009401.1| Triticum aestivum clone wlm96.pk045.d23:fis, full insert mRNA
            sequence
          Length = 1149

 Score =  400 bits (202), Expect = e-108
 Identities = 289/315 (91%), Gaps = 5/315 (1%)
 Strand = Plus / Minus

                                                                        
Query: 8    gagttacgagattggttacacattccaccattaacaccaaccaagtaangttcagctatg 67
            ||||||| ||||||||| |||||||||||||||||| ||||||| ||| ||||||||| |
Sbjct: 1060 gagttacaagattggttgcacattccaccattaacagcaaccaaataaggttcagcta-g 1002

                                                                        
Query: 68   taagaa-acagagttccatcgtgccgcattcaacaaccaagccggtgcaggaaagcataa 126
             ||||| ||| |||||||||||||  ||||||||||||  |||||||||| |||||||||
Sbjct: 1001 caagaacacatagttccatcgtgcttcattcaacaacc--gccggtgcag-aaagcataa 945

                                                                        
Query: 127  tntgcaggtagagacaggtttactgtttatttcttaatacaaactacattactgtgagct 186
            | | || ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 944  tatccatgtagagacaggtttactgtttatttcttagtacaaactacattactgtgagct 885

                                                                        
Query: 187  taacangtcagattcactggctgctagattcgtcatgctccggctgcatctggttcagca 246
             |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 884  caacaagtcagattcactggctgctagattcgtcatgctctggctgcatctggttcagca 825

                                                                        
Query: 247  caaaagctccctcaaggttcttatgcacctnggntttcattttctcctcctttgtccctc 306
            ||||||||||||| |||||||||||||||| || |||||||||||||||||| |||||||
Sbjct: 824  caaaagctccctcgaggttcttatgcacctcggctttcattttctcctccttggtccctc 765

                           
Query: 307  tnttcagtttcatga 321
            | |||||||||||||
Sbjct: 764  tcttcagtttcatga 750



to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 84/100 (84%)
 Strand = Plus / Plus

                                                                           
Query: 199     ttcactggctgctagattcgtcatgctccggctgcatctggttcagcacaaaagctccct 258
               ||||||||||||| ||||| ||||||||  | |||||||||||||| ||||| || || |
Sbjct: 9324918 ttcactggctgctcgattcatcatgctcttgttgcatctggttcagtacaaatgcccctt 9324977

                                                       
Query: 259     caaggttcttatgcacctnggntttcattttctcctcctt 298
               |||||||||| || |||| || ||| |  |||||||||||
Sbjct: 9324978 caaggttcttgtggacctcggctttgaacttctcctcctt 9325017



to top

>dbj|AP001073.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0667A10
          Length = 152237

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 84/100 (84%)
 Strand = Plus / Plus

                                                                          
Query: 199    ttcactggctgctagattcgtcatgctccggctgcatctggttcagcacaaaagctccct 258
              ||||||||||||| ||||| ||||||||  | |||||||||||||| ||||| || || |
Sbjct: 101512 ttcactggctgctcgattcatcatgctcttgttgcatctggttcagtacaaatgcccctt 101571

                                                      
Query: 259    caaggttcttatgcacctnggntttcattttctcctcctt 298
              |||||||||| || |||| || ||| |  |||||||||||
Sbjct: 101572 caaggttcttgtggacctcggctttgaacttctcctcctt 101611



to top

>dbj|AK119511.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-C04, full
           insert sequence
          Length = 1095

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 84/100 (84%)
 Strand = Plus / Minus

                                                                       
Query: 199 ttcactggctgctagattcgtcatgctccggctgcatctggttcagcacaaaagctccct 258
           ||||||||||||| ||||| ||||||||  | |||||||||||||| ||||| || || |
Sbjct: 852 ttcactggctgctcgattcatcatgctcttgttgcatctggttcagtacaaatgcccctt 793

                                                   
Query: 259 caaggttcttatgcacctnggntttcattttctcctcctt 298
           |||||||||| || |||| || ||| |  |||||||||||
Sbjct: 792 caaggttcttgtggacctcggctttgaacttctcctcctt 753



to top

>dbj|AK104155.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-B08, full
           insert sequence
          Length = 1023

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 84/100 (84%)
 Strand = Plus / Minus

                                                                       
Query: 199 ttcactggctgctagattcgtcatgctccggctgcatctggttcagcacaaaagctccct 258
           ||||||||||||| ||||| ||||||||  | |||||||||||||| ||||| || || |
Sbjct: 750 ttcactggctgctcgattcatcatgctcttgttgcatctggttcagtacaaatgcccctt 691

                                                   
Query: 259 caaggttcttatgcacctnggntttcattttctcctcctt 298
           |||||||||| || |||| || ||| |  |||||||||||
Sbjct: 690 caaggttcttgtggacctcggctttgaacttctcctcctt 651



to top

>dbj|AK073275.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025K21, full
           insert sequence
          Length = 1095

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 84/100 (84%)
 Strand = Plus / Minus

                                                                       
Query: 199 ttcactggctgctagattcgtcatgctccggctgcatctggttcagcacaaaagctccct 258
           ||||||||||||| ||||| ||||||||  | |||||||||||||| ||||| || || |
Sbjct: 847 ttcactggctgctcgattcatcatgctcttgttgcatctggttcagtacaaatgcccctt 788

                                                   
Query: 259 caaggttcttatgcacctnggntttcattttctcctcctt 298
           |||||||||| || |||| || ||| |  |||||||||||
Sbjct: 787 caaggttcttgtggacctcggctttgaacttctcctcctt 748



to top

>ref|NM_188046.1| Oryza sativa (japonica cultivar-group), Ozsa8466 predicted mRNA
          Length = 753

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 83/99 (83%)
 Strand = Plus / Minus

                                                                       
Query: 200 tcactggctgctagattcgtcatgctccggctgcatctggttcagcacaaaagctccctc 259
           |||||||||||| ||||| ||||||||  | |||||||||||||| ||||| || || ||
Sbjct: 753 tcactggctgctcgattcatcatgctcttgttgcatctggttcagtacaaatgccccttc 694

                                                  
Query: 260 aaggttcttatgcacctnggntttcattttctcctcctt 298
           ||||||||| || |||| || ||| |  |||||||||||
Sbjct: 693 aaggttcttgtggacctcggctttgaacttctcctcctt 655



to top

>emb|AL845270.6| Mouse DNA sequence from clone RP23-186C16 on chromosome 2, complete
             sequence
          Length = 218247

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 150   tgtttatttcttaatacaaactaca 174
             |||||||||||||||||||||||||
Sbjct: 16365 tgtttatttcttaatacaaactaca 16389



to top

>tpe|BN000509.1| TPA: TPA_exp: Zea mays mRNA for putative cystatin (cc4 gene)
          Length = 1052

 Score = 46.1 bits (23), Expect = 0.070
 Identities = 68/84 (80%)
 Strand = Plus / Minus

                                                                       
Query: 236 ctggttcagcacaaaagctccctcaaggttcttatgcacctnggntttcattttctcctc 295
           |||||| |||||||| || || || ||| ||||||| ||||  | ||| || ||||||||
Sbjct: 734 ctggtttagcacaaaggccccttccaggctcttatggacctcagctttgatcttctcctc 675

                                   
Query: 296 ctttgtccctctnttcagtttcat 319
           |||  | ||||| |||||||||||
Sbjct: 674 cttgctgcctctcttcagtttcat 651



to top

>emb|AM055633.1| Zea mays mRNA for partial putative cystatin (cc4 gene)
          Length = 681

 Score = 46.1 bits (23), Expect = 0.070
 Identities = 68/84 (80%)
 Strand = Plus / Minus

                                                                       
Query: 236 ctggttcagcacaaaagctccctcaaggttcttatgcacctnggntttcattttctcctc 295
           |||||| |||||||| || || || ||| ||||||| ||||  | ||| || ||||||||
Sbjct: 679 ctggtttagcacaaaggccccttccaggctcttatggacctctgctttgatcttctcctc 620

                                   
Query: 296 ctttgtccctctnttcagtttcat 319
           |||  | ||||| |||||||||||
Sbjct: 619 cttgctgcctctcttcagtttcat 596



to top

>gb|AC116476.6| Mus musculus chromosome 15, clone RP23-387K7, complete sequence
          Length = 198541

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 64     tatgtaagaaacagagttcca 84
              |||||||||||||||||||||
Sbjct: 159230 tatgtaagaaacagagttcca 159250



to top

>gb|AC132935.7| Mus musculus chromosome 15, clone RP24-142P21, complete sequence
          Length = 140484

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 64    tatgtaagaaacagagttcca 84
             |||||||||||||||||||||
Sbjct: 81279 tatgtaagaaacagagttcca 81259



to top

>gb|AC157896.3| Mus musculus chromosome 15, clone RP23-438M9, complete sequence
          Length = 204574

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 64    tatgtaagaaacagagttcca 84
             |||||||||||||||||||||
Sbjct: 39783 tatgtaagaaacagagttcca 39803



to top

>dbj|AK034433.1| Mus musculus adult male diencephalon cDNA, RIKEN full-length enriched
            library, clone:9330190I16 product:unclassifiable, full
            insert sequence
          Length = 3601

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 64   tatgtaagaaacagagttcca 84
            |||||||||||||||||||||
Sbjct: 1244 tatgtaagaaacagagttcca 1264



to top

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 281      tttcattttctcctcctttgtccct 305
                |||||||||||||| ||||||||||
Sbjct: 11926566 tttcattttctccttctttgtccct 11926542



to top

>gb|AC120132.11| Mus musculus chromosome 6, clone RP23-105D1, complete sequence
          Length = 203185

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 283   tcattttctcctcctttgtccctct 307
             |||||| ||||||||||||||||||
Sbjct: 78794 tcatttcctcctcctttgtccctct 78818



to top

>dbj|AP006424.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT13E04, TM0314,
             complete sequence
          Length = 126349

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 299   tgtccctctnttcagtttcatgac 322
             ||||||||| ||||||||||||||
Sbjct: 68172 tgtccctctcttcagtttcatgac 68195



to top

>gb|AC159106.2| Mus musculus chromosome 14 clone RP23-244I11, complete sequence
          Length = 168884

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 141   caggtttactgtttatttcttaata 165
             |||| ||||||||||||||||||||
Sbjct: 63841 caggcttactgtttatttcttaata 63817



to top

>ref|XM_873520.1| PREDICTED: Bos taurus similar to Wilms tumour 1-associating protein
            isoform 1, transcript variant 6 (LOC532996), mRNA
          Length = 1460

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 25   acacattccaccattaacaccaac 48
            ||||||||| ||||||||||||||
Sbjct: 1401 acacattcccccattaacaccaac 1378



to top

>ref|XM_612242.2| PREDICTED: Bos taurus similar to Wilms tumour 1-associating protein
            isoform 1, transcript variant 1 (LOC532996), mRNA
          Length = 1495

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 25   acacattccaccattaacaccaac 48
            ||||||||| ||||||||||||||
Sbjct: 1436 acacattcccccattaacaccaac 1413



to top

>ref|XM_873116.1| PREDICTED: Bos taurus similar to Wilms tumour 1-associating protein
            isoform 1, transcript variant 4 (LOC532996), mRNA
          Length = 1463

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 25   acacattccaccattaacaccaac 48
            ||||||||| ||||||||||||||
Sbjct: 1404 acacattcccccattaacaccaac 1381



to top

>ref|XM_873010.1| PREDICTED: Bos taurus similar to Wilms tumour 1-associating protein
            isoform 1, transcript variant 3 (LOC532996), mRNA
          Length = 1237

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 25   acacattccaccattaacaccaac 48
            ||||||||| ||||||||||||||
Sbjct: 1178 acacattcccccattaacaccaac 1155



to top

>gb|BC112754.1| Bos taurus similar to Wilms tumour 1-associating protein isoform 1,
            transcript variant 1, mRNA (cDNA clone IMAGE:8170368),
            complete cds
          Length = 1679

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 25   acacattccaccattaacaccaac 48
            ||||||||| ||||||||||||||
Sbjct: 1603 acacattcccccattaacaccaac 1580



to top

>emb|AL158050.8| Human DNA sequence from clone RP3-437C15 on chromosome 6 Contains a
              Wilms' tumour 1-associating protein (WTAP) (KIAA0105)
              pseudogene, complete sequence
          Length = 149679

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 25     acacattccaccattaacaccaac 48
              ||||||||| ||||||||||||||
Sbjct: 122702 acacattcccccattaacaccaac 122725



to top

>emb|AL135914.25| Human DNA sequence from clone RP1-56L9 on chromosome 6 Contains a novel
              gene, the SOD2 gene for superoxide dismutase 2,
              mitochondrial, a pseudogene similar to heterogenous nuclear
              ribonucleoprotein H, the gene for Wilms' tumor
              1-associating protein (KIAA0105) (WTAP), the ACAT2 gene for
              acetyl-Coenzyme A acetyltransferase 2 (acetoacetyl Coenzyme
              A thiolase), the TCP1 gene for t-complex 1 (CCT1, Ccta,
              D6S230E), the 5' end of the MRPL18 gene for mitochondrial
              ribosomal protein L18, and 4 CpG islands, complete sequence
          Length = 165802

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 25     acacattccaccattaacaccaac 48
              ||||||||| ||||||||||||||
Sbjct: 121039 acacattcccccattaacaccaac 121016



to top

>dbj|D14661.1|HUMORF05 Homo sapiens KIAA0105 mRNA, complete cds
          Length = 1622

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 25   acacattccaccattaacaccaac 48
            ||||||||| ||||||||||||||
Sbjct: 1563 acacattcccccattaacaccaac 1540



to top

>emb|CR622276.1| full-length cDNA clone CS0DI060YM16 of Placenta Cot 25-normalized of
            Homo sapiens (human)
          Length = 1679

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 25   acacattccaccattaacaccaac 48
            ||||||||| ||||||||||||||
Sbjct: 1628 acacattcccccattaacaccaac 1605



to top

>emb|CR607182.1| full-length cDNA clone CS0DI085YO18 of Placenta Cot 25-normalized of
            Homo sapiens (human)
          Length = 1660

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 25   acacattccaccattaacaccaac 48
            ||||||||| ||||||||||||||
Sbjct: 1625 acacattcccccattaacaccaac 1602



to top

>emb|CR605059.1| full-length cDNA clone CS0DE010YD16 of Placenta of Homo sapiens
            (human)
          Length = 1573

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 25   acacattccaccattaacaccaac 48
            ||||||||| ||||||||||||||
Sbjct: 1532 acacattcccccattaacaccaac 1509



to top

>emb|CR606450.1| full-length cDNA clone CS0DN001YM02 of Adult brain of Homo sapiens
            (human)
          Length = 1641

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 25   acacattccaccattaacaccaac 48
            ||||||||| ||||||||||||||
Sbjct: 1605 acacattcccccattaacaccaac 1582



to top

>emb|CR602734.1| full-length cDNA clone CS0DG004YF21 of B cells (Ramos cell line) of
            Homo sapiens (human)
          Length = 1656

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 25   acacattccaccattaacaccaac 48
            ||||||||| ||||||||||||||
Sbjct: 1613 acacattcccccattaacaccaac 1590



to top

>emb|CR602556.1| full-length cDNA clone CS0DH002YO11 of T cells (Jurkat cell line) of
            Homo sapiens (human)
          Length = 1694

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 25   acacattccaccattaacaccaac 48
            ||||||||| ||||||||||||||
Sbjct: 1667 acacattcccccattaacaccaac 1644



to top

>emb|CR595437.1| full-length cDNA clone CS0DF021YA16 of Fetal brain of Homo sapiens
           (human)
          Length = 1059

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 25  acacattccaccattaacaccaac 48
           ||||||||| ||||||||||||||
Sbjct: 996 acacattcccccattaacaccaac 973



to top

>emb|BX537293.9| Zebrafish DNA sequence from clone DKEYP-40D11 in linkage group 5,
             complete sequence
          Length = 134768

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 153   ttatttcttaatacaaacta 172
             ||||||||||||||||||||
Sbjct: 34609 ttatttcttaatacaaacta 34628



to top

>ref|NM_152857.1| Homo sapiens Wilms tumor 1 associated protein (WTAP), transcript
            variant 2, mRNA
          Length = 1644

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 25   acacattccaccattaacaccaac 48
            ||||||||| ||||||||||||||
Sbjct: 1563 acacattcccccattaacaccaac 1540



to top

>ref|NM_152858.1| Homo sapiens Wilms tumor 1 associated protein (WTAP), transcript
            variant 3, mRNA
          Length = 1742

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 25   acacattccaccattaacaccaac 48
            ||||||||| ||||||||||||||
Sbjct: 1661 acacattcccccattaacaccaac 1638



to top

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 215     ttcgtcatgctccggctgca 234
               ||||||||||||||||||||
Sbjct: 3163640 ttcgtcatgctccggctgca 3163621


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,815,653
Number of Sequences: 3902068
Number of extensions: 2815653
Number of successful extensions: 58036
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57939
Number of HSP's gapped (non-prelim): 93
length of query: 325
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 303
effective length of database: 17,147,199,772
effective search space: 5195601530916
effective search space used: 5195601530916
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top