| Clone Name | rbags37f19 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB223039.1| Triticum aestivum TaMDC1 mRNA for multidomain cystatin, complete cds Length = 1031 Score = 438 bits (221), Expect = e-120 Identities = 292/315 (92%), Gaps = 2/315 (0%) Strand = Plus / Minus Query: 7 tgagttacgagattggttacacattccaccattaacaccaaccaagtaangttcagctat 66 |||||||| ||||||||| |||||||||||||||||| ||||||| ||| ||||||||| Sbjct: 977 tgagttacaagattggttgcacattccaccattaacagcaaccaaataaggttcagcta- 919 Query: 67 gtaagaaacagagttccatcgtgccgcattcaacaaccaagccggtgcaggaaagcataa 126 |||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct: 918 gtaagaaacatagttccatcgtgattcattcaacaaccaagccggtgcaa-aaagcataa 860 Query: 127 tntgcaggtagagacaggtttactgtttatttcttaatacaaactacattactgtgagct 186 | | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 859 tatccaggtagagacaggtttactgtttatttcttagtacaaactacattactgtgagct 800 Query: 187 taacangtcagattcactggctgctagattcgtcatgctccggctgcatctggttcagca 246 |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 799 caacaagtcagattcactggctgctagattcgtcatgctctggctgcatctggttcagca 740 Query: 247 caaaagctccctcaaggttcttatgcacctnggntttcattttctcctcctttgtccctc 306 ||||||||||||| |||||||||||||||| || |||||||||||||||||| ||||||| Sbjct: 739 caaaagctccctcgaggttcttatgcacctcggctttcattttctcctccttggtccctc 680 Query: 307 tnttcagtttcatga 321 | ||||||||||||| Sbjct: 679 tcttcagtttcatga 665
>gb|BT009401.1| Triticum aestivum clone wlm96.pk045.d23:fis, full insert mRNA sequence Length = 1149 Score = 400 bits (202), Expect = e-108 Identities = 289/315 (91%), Gaps = 5/315 (1%) Strand = Plus / Minus Query: 8 gagttacgagattggttacacattccaccattaacaccaaccaagtaangttcagctatg 67 ||||||| ||||||||| |||||||||||||||||| ||||||| ||| ||||||||| | Sbjct: 1060 gagttacaagattggttgcacattccaccattaacagcaaccaaataaggttcagcta-g 1002 Query: 68 taagaa-acagagttccatcgtgccgcattcaacaaccaagccggtgcaggaaagcataa 126 ||||| ||| ||||||||||||| |||||||||||| |||||||||| ||||||||| Sbjct: 1001 caagaacacatagttccatcgtgcttcattcaacaacc--gccggtgcag-aaagcataa 945 Query: 127 tntgcaggtagagacaggtttactgtttatttcttaatacaaactacattactgtgagct 186 | | || ||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 944 tatccatgtagagacaggtttactgtttatttcttagtacaaactacattactgtgagct 885 Query: 187 taacangtcagattcactggctgctagattcgtcatgctccggctgcatctggttcagca 246 |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 884 caacaagtcagattcactggctgctagattcgtcatgctctggctgcatctggttcagca 825 Query: 247 caaaagctccctcaaggttcttatgcacctnggntttcattttctcctcctttgtccctc 306 ||||||||||||| |||||||||||||||| || |||||||||||||||||| ||||||| Sbjct: 824 caaaagctccctcgaggttcttatgcacctcggctttcattttctcctccttggtccctc 765 Query: 307 tnttcagtttcatga 321 | ||||||||||||| Sbjct: 764 tcttcagtttcatga 750
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 75.8 bits (38), Expect = 8e-11 Identities = 84/100 (84%) Strand = Plus / Plus Query: 199 ttcactggctgctagattcgtcatgctccggctgcatctggttcagcacaaaagctccct 258 ||||||||||||| ||||| |||||||| | |||||||||||||| ||||| || || | Sbjct: 9324918 ttcactggctgctcgattcatcatgctcttgttgcatctggttcagtacaaatgcccctt 9324977 Query: 259 caaggttcttatgcacctnggntttcattttctcctcctt 298 |||||||||| || |||| || ||| | ||||||||||| Sbjct: 9324978 caaggttcttgtggacctcggctttgaacttctcctcctt 9325017
>dbj|AP001073.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0667A10 Length = 152237 Score = 75.8 bits (38), Expect = 8e-11 Identities = 84/100 (84%) Strand = Plus / Plus Query: 199 ttcactggctgctagattcgtcatgctccggctgcatctggttcagcacaaaagctccct 258 ||||||||||||| ||||| |||||||| | |||||||||||||| ||||| || || | Sbjct: 101512 ttcactggctgctcgattcatcatgctcttgttgcatctggttcagtacaaatgcccctt 101571 Query: 259 caaggttcttatgcacctnggntttcattttctcctcctt 298 |||||||||| || |||| || ||| | ||||||||||| Sbjct: 101572 caaggttcttgtggacctcggctttgaacttctcctcctt 101611
>dbj|AK119511.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-C04, full insert sequence Length = 1095 Score = 75.8 bits (38), Expect = 8e-11 Identities = 84/100 (84%) Strand = Plus / Minus Query: 199 ttcactggctgctagattcgtcatgctccggctgcatctggttcagcacaaaagctccct 258 ||||||||||||| ||||| |||||||| | |||||||||||||| ||||| || || | Sbjct: 852 ttcactggctgctcgattcatcatgctcttgttgcatctggttcagtacaaatgcccctt 793 Query: 259 caaggttcttatgcacctnggntttcattttctcctcctt 298 |||||||||| || |||| || ||| | ||||||||||| Sbjct: 792 caaggttcttgtggacctcggctttgaacttctcctcctt 753
>dbj|AK104155.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-B08, full insert sequence Length = 1023 Score = 75.8 bits (38), Expect = 8e-11 Identities = 84/100 (84%) Strand = Plus / Minus Query: 199 ttcactggctgctagattcgtcatgctccggctgcatctggttcagcacaaaagctccct 258 ||||||||||||| ||||| |||||||| | |||||||||||||| ||||| || || | Sbjct: 750 ttcactggctgctcgattcatcatgctcttgttgcatctggttcagtacaaatgcccctt 691 Query: 259 caaggttcttatgcacctnggntttcattttctcctcctt 298 |||||||||| || |||| || ||| | ||||||||||| Sbjct: 690 caaggttcttgtggacctcggctttgaacttctcctcctt 651
>dbj|AK073275.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025K21, full insert sequence Length = 1095 Score = 75.8 bits (38), Expect = 8e-11 Identities = 84/100 (84%) Strand = Plus / Minus Query: 199 ttcactggctgctagattcgtcatgctccggctgcatctggttcagcacaaaagctccct 258 ||||||||||||| ||||| |||||||| | |||||||||||||| ||||| || || | Sbjct: 847 ttcactggctgctcgattcatcatgctcttgttgcatctggttcagtacaaatgcccctt 788 Query: 259 caaggttcttatgcacctnggntttcattttctcctcctt 298 |||||||||| || |||| || ||| | ||||||||||| Sbjct: 787 caaggttcttgtggacctcggctttgaacttctcctcctt 748
>ref|NM_188046.1| Oryza sativa (japonica cultivar-group), Ozsa8466 predicted mRNA Length = 753 Score = 73.8 bits (37), Expect = 3e-10 Identities = 83/99 (83%) Strand = Plus / Minus Query: 200 tcactggctgctagattcgtcatgctccggctgcatctggttcagcacaaaagctccctc 259 |||||||||||| ||||| |||||||| | |||||||||||||| ||||| || || || Sbjct: 753 tcactggctgctcgattcatcatgctcttgttgcatctggttcagtacaaatgccccttc 694 Query: 260 aaggttcttatgcacctnggntttcattttctcctcctt 298 ||||||||| || |||| || ||| | ||||||||||| Sbjct: 693 aaggttcttgtggacctcggctttgaacttctcctcctt 655
>emb|AL845270.6| Mouse DNA sequence from clone RP23-186C16 on chromosome 2, complete sequence Length = 218247 Score = 50.1 bits (25), Expect = 0.004 Identities = 25/25 (100%) Strand = Plus / Plus Query: 150 tgtttatttcttaatacaaactaca 174 ||||||||||||||||||||||||| Sbjct: 16365 tgtttatttcttaatacaaactaca 16389
>tpe|BN000509.1| TPA: TPA_exp: Zea mays mRNA for putative cystatin (cc4 gene) Length = 1052 Score = 46.1 bits (23), Expect = 0.070 Identities = 68/84 (80%) Strand = Plus / Minus Query: 236 ctggttcagcacaaaagctccctcaaggttcttatgcacctnggntttcattttctcctc 295 |||||| |||||||| || || || ||| ||||||| |||| | ||| || |||||||| Sbjct: 734 ctggtttagcacaaaggccccttccaggctcttatggacctcagctttgatcttctcctc 675 Query: 296 ctttgtccctctnttcagtttcat 319 ||| | ||||| ||||||||||| Sbjct: 674 cttgctgcctctcttcagtttcat 651
>emb|AM055633.1| Zea mays mRNA for partial putative cystatin (cc4 gene) Length = 681 Score = 46.1 bits (23), Expect = 0.070 Identities = 68/84 (80%) Strand = Plus / Minus Query: 236 ctggttcagcacaaaagctccctcaaggttcttatgcacctnggntttcattttctcctc 295 |||||| |||||||| || || || ||| ||||||| |||| | ||| || |||||||| Sbjct: 679 ctggtttagcacaaaggccccttccaggctcttatggacctctgctttgatcttctcctc 620 Query: 296 ctttgtccctctnttcagtttcat 319 ||| | ||||| ||||||||||| Sbjct: 619 cttgctgcctctcttcagtttcat 596
>gb|AC116476.6| Mus musculus chromosome 15, clone RP23-387K7, complete sequence Length = 198541 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 64 tatgtaagaaacagagttcca 84 ||||||||||||||||||||| Sbjct: 159230 tatgtaagaaacagagttcca 159250
>gb|AC132935.7| Mus musculus chromosome 15, clone RP24-142P21, complete sequence Length = 140484 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 64 tatgtaagaaacagagttcca 84 ||||||||||||||||||||| Sbjct: 81279 tatgtaagaaacagagttcca 81259
>gb|AC157896.3| Mus musculus chromosome 15, clone RP23-438M9, complete sequence Length = 204574 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 64 tatgtaagaaacagagttcca 84 ||||||||||||||||||||| Sbjct: 39783 tatgtaagaaacagagttcca 39803
>dbj|AK034433.1| Mus musculus adult male diencephalon cDNA, RIKEN full-length enriched library, clone:9330190I16 product:unclassifiable, full insert sequence Length = 3601 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 64 tatgtaagaaacagagttcca 84 ||||||||||||||||||||| Sbjct: 1244 tatgtaagaaacagagttcca 1264
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 281 tttcattttctcctcctttgtccct 305 |||||||||||||| |||||||||| Sbjct: 11926566 tttcattttctccttctttgtccct 11926542
>gb|AC120132.11| Mus musculus chromosome 6, clone RP23-105D1, complete sequence Length = 203185 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 283 tcattttctcctcctttgtccctct 307 |||||| |||||||||||||||||| Sbjct: 78794 tcatttcctcctcctttgtccctct 78818
>dbj|AP006424.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT13E04, TM0314, complete sequence Length = 126349 Score = 42.1 bits (21), Expect = 1.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 299 tgtccctctnttcagtttcatgac 322 ||||||||| |||||||||||||| Sbjct: 68172 tgtccctctcttcagtttcatgac 68195
>gb|AC159106.2| Mus musculus chromosome 14 clone RP23-244I11, complete sequence Length = 168884 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 141 caggtttactgtttatttcttaata 165 |||| |||||||||||||||||||| Sbjct: 63841 caggcttactgtttatttcttaata 63817
>ref|XM_873520.1| PREDICTED: Bos taurus similar to Wilms tumour 1-associating protein isoform 1, transcript variant 6 (LOC532996), mRNA Length = 1460 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 acacattccaccattaacaccaac 48 ||||||||| |||||||||||||| Sbjct: 1401 acacattcccccattaacaccaac 1378
>ref|XM_612242.2| PREDICTED: Bos taurus similar to Wilms tumour 1-associating protein isoform 1, transcript variant 1 (LOC532996), mRNA Length = 1495 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 acacattccaccattaacaccaac 48 ||||||||| |||||||||||||| Sbjct: 1436 acacattcccccattaacaccaac 1413
>ref|XM_873116.1| PREDICTED: Bos taurus similar to Wilms tumour 1-associating protein isoform 1, transcript variant 4 (LOC532996), mRNA Length = 1463 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 acacattccaccattaacaccaac 48 ||||||||| |||||||||||||| Sbjct: 1404 acacattcccccattaacaccaac 1381
>ref|XM_873010.1| PREDICTED: Bos taurus similar to Wilms tumour 1-associating protein isoform 1, transcript variant 3 (LOC532996), mRNA Length = 1237 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 acacattccaccattaacaccaac 48 ||||||||| |||||||||||||| Sbjct: 1178 acacattcccccattaacaccaac 1155
>gb|BC112754.1| Bos taurus similar to Wilms tumour 1-associating protein isoform 1, transcript variant 1, mRNA (cDNA clone IMAGE:8170368), complete cds Length = 1679 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 acacattccaccattaacaccaac 48 ||||||||| |||||||||||||| Sbjct: 1603 acacattcccccattaacaccaac 1580
>emb|AL158050.8| Human DNA sequence from clone RP3-437C15 on chromosome 6 Contains a Wilms' tumour 1-associating protein (WTAP) (KIAA0105) pseudogene, complete sequence Length = 149679 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 25 acacattccaccattaacaccaac 48 ||||||||| |||||||||||||| Sbjct: 122702 acacattcccccattaacaccaac 122725
>emb|AL135914.25| Human DNA sequence from clone RP1-56L9 on chromosome 6 Contains a novel gene, the SOD2 gene for superoxide dismutase 2, mitochondrial, a pseudogene similar to heterogenous nuclear ribonucleoprotein H, the gene for Wilms' tumor 1-associating protein (KIAA0105) (WTAP), the ACAT2 gene for acetyl-Coenzyme A acetyltransferase 2 (acetoacetyl Coenzyme A thiolase), the TCP1 gene for t-complex 1 (CCT1, Ccta, D6S230E), the 5' end of the MRPL18 gene for mitochondrial ribosomal protein L18, and 4 CpG islands, complete sequence Length = 165802 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 acacattccaccattaacaccaac 48 ||||||||| |||||||||||||| Sbjct: 121039 acacattcccccattaacaccaac 121016
>dbj|D14661.1|HUMORF05 Homo sapiens KIAA0105 mRNA, complete cds Length = 1622 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 acacattccaccattaacaccaac 48 ||||||||| |||||||||||||| Sbjct: 1563 acacattcccccattaacaccaac 1540
>emb|CR622276.1| full-length cDNA clone CS0DI060YM16 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1679 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 acacattccaccattaacaccaac 48 ||||||||| |||||||||||||| Sbjct: 1628 acacattcccccattaacaccaac 1605
>emb|CR607182.1| full-length cDNA clone CS0DI085YO18 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1660 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 acacattccaccattaacaccaac 48 ||||||||| |||||||||||||| Sbjct: 1625 acacattcccccattaacaccaac 1602
>emb|CR605059.1| full-length cDNA clone CS0DE010YD16 of Placenta of Homo sapiens (human) Length = 1573 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 acacattccaccattaacaccaac 48 ||||||||| |||||||||||||| Sbjct: 1532 acacattcccccattaacaccaac 1509
>emb|CR606450.1| full-length cDNA clone CS0DN001YM02 of Adult brain of Homo sapiens (human) Length = 1641 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 acacattccaccattaacaccaac 48 ||||||||| |||||||||||||| Sbjct: 1605 acacattcccccattaacaccaac 1582
>emb|CR602734.1| full-length cDNA clone CS0DG004YF21 of B cells (Ramos cell line) of Homo sapiens (human) Length = 1656 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 acacattccaccattaacaccaac 48 ||||||||| |||||||||||||| Sbjct: 1613 acacattcccccattaacaccaac 1590
>emb|CR602556.1| full-length cDNA clone CS0DH002YO11 of T cells (Jurkat cell line) of Homo sapiens (human) Length = 1694 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 acacattccaccattaacaccaac 48 ||||||||| |||||||||||||| Sbjct: 1667 acacattcccccattaacaccaac 1644
>emb|CR595437.1| full-length cDNA clone CS0DF021YA16 of Fetal brain of Homo sapiens (human) Length = 1059 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 acacattccaccattaacaccaac 48 ||||||||| |||||||||||||| Sbjct: 996 acacattcccccattaacaccaac 973
>emb|BX537293.9| Zebrafish DNA sequence from clone DKEYP-40D11 in linkage group 5, complete sequence Length = 134768 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 ttatttcttaatacaaacta 172 |||||||||||||||||||| Sbjct: 34609 ttatttcttaatacaaacta 34628
>ref|NM_152857.1| Homo sapiens Wilms tumor 1 associated protein (WTAP), transcript variant 2, mRNA Length = 1644 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 acacattccaccattaacaccaac 48 ||||||||| |||||||||||||| Sbjct: 1563 acacattcccccattaacaccaac 1540
>ref|NM_152858.1| Homo sapiens Wilms tumor 1 associated protein (WTAP), transcript variant 3, mRNA Length = 1742 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 acacattccaccattaacaccaac 48 ||||||||| |||||||||||||| Sbjct: 1661 acacattcccccattaacaccaac 1638
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 ttcgtcatgctccggctgca 234 |||||||||||||||||||| Sbjct: 3163640 ttcgtcatgctccggctgca 3163621 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,815,653 Number of Sequences: 3902068 Number of extensions: 2815653 Number of successful extensions: 58036 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57939 Number of HSP's gapped (non-prelim): 93 length of query: 325 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 303 effective length of database: 17,147,199,772 effective search space: 5195601530916 effective search space used: 5195601530916 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)