ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags37f17 |
|---|---|
| Clone Library Name | barley_pub |
>PSBP_WHEAT (Q00434) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 258 Score = 139 bits (351), Expect = 1e-33 Identities = 72/81 (88%), Positives = 73/81 (90%) Frame = -1 Query: 345 DXVATANVLKSSXPVVXGKQYYSITVLTRTADGDXGGKHQLITATVADGKLYVCKAQAGX 166 D VATANVL+SS PVV GKQYYSITVLTRTADGD GGKHQLITATVADGKLYVCKAQ Sbjct: 179 DAVATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLYVCKAQR-D 237 Query: 165 KRWFKGAXKFVENAAGSFSVA 103 KRWFKGA KFVENAAGSFSVA Sbjct: 238 KRWFKGAKKFVENAAGSFSVA 258
>PSBP_SPIOL (P12302) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 267 Score = 133 bits (335), Expect = 9e-32 Identities = 65/79 (82%), Positives = 70/79 (88%) Frame = -1 Query: 339 VATANVLKSSXPVVXGKQYYSITVLTRTADGDXGGKHQLITATVADGKLYVCKAQAGXKR 160 VA+ANVL+SS PVV GKQYYSITVLTRTADGD GGKHQ+I ATV DGKLY+CKAQAG KR Sbjct: 189 VASANVLESSTPVVDGKQYYSITVLTRTADGDEGGKHQVIAATVKDGKLYICKAQAGDKR 248 Query: 159 WFKGAXKFVENAAGSFSVA 103 WFKGA KFVE+A SFSVA Sbjct: 249 WFKGAKKFVESATSSFSVA 267
>PSBP_PEA (P16059) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 259 Score = 133 bits (334), Expect = 1e-31 Identities = 63/81 (77%), Positives = 71/81 (87%) Frame = -1 Query: 345 DXVATANVLKSSXPVVXGKQYYSITVLTRTADGDXGGKHQLITATVADGKLYVCKAQAGX 166 + VA AN+L+SS PV+ GKQYY+I+VLTRTADGD GGKHQLITATV DGKLY+CKAQAG Sbjct: 179 NAVAVANILESSAPVIGGKQYYNISVLTRTADGDEGGKHQLITATVKDGKLYICKAQAGD 238 Query: 165 KRWFKGAXKFVENAAGSFSVA 103 KRWFKGA KFVE+ A SFSVA Sbjct: 239 KRWFKGARKFVEDTASSFSVA 259
>PSBP_NARPS (Q40407) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 265 Score = 128 bits (322), Expect = 3e-30 Identities = 62/81 (76%), Positives = 69/81 (85%) Frame = -1 Query: 345 DXVATANVLKSSXPVVXGKQYYSITVLTRTADGDXGGKHQLITATVADGKLYVCKAQAGX 166 + V TAN+L++S PVV GK YYSI VLTRTADGD GGKH LITATV+DGKLY+CKAQAG Sbjct: 185 NAVRTANILETSTPVVGGKDYYSIHVLTRTADGDEGGKHLLITATVSDGKLYICKAQAGD 244 Query: 165 KRWFKGAXKFVENAAGSFSVA 103 KRWFKGA KFVE+AA SFS A Sbjct: 245 KRWFKGAKKFVESAASSFSAA 265
>PSBP_SOLTU (P93566) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 260 Score = 128 bits (322), Expect = 3e-30 Identities = 62/79 (78%), Positives = 69/79 (87%) Frame = -1 Query: 339 VATANVLKSSXPVVXGKQYYSITVLTRTADGDXGGKHQLITATVADGKLYVCKAQAGXKR 160 VATAN+L++S V GKQYY ++VLTRTADGD GGKHQLITATV DGKLY+CKAQAG KR Sbjct: 182 VATANLLEASSATVGGKQYYYLSVLTRTADGDEGGKHQLITATVNDGKLYICKAQAGDKR 241 Query: 159 WFKGAXKFVENAAGSFSVA 103 WFKGA KFVENAA SFS+A Sbjct: 242 WFKGAKKFVENAATSFSIA 260
>PSBP_FRIAG (O49080) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 264 Score = 127 bits (319), Expect = 7e-30 Identities = 60/81 (74%), Positives = 69/81 (85%) Frame = -1 Query: 345 DXVATANVLKSSXPVVXGKQYYSITVLTRTADGDXGGKHQLITATVADGKLYVCKAQAGX 166 D VATAN+L+ S PVV GKQYY+I+VLTRTADGD GGKH +I+ATV DGKLY+CKAQAG Sbjct: 184 DSVATANILEVSTPVVGGKQYYNISVLTRTADGDEGGKHHVISATVTDGKLYICKAQAGD 243 Query: 165 KRWFKGAXKFVENAAGSFSVA 103 KRWFKGA KFVE+ SF+VA Sbjct: 244 KRWFKGAKKFVESTTTSFNVA 264
>PSBP_CUCSA (Q9SLQ8) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) (OEC23) Length = 263 Score = 126 bits (317), Expect = 1e-29 Identities = 61/81 (75%), Positives = 68/81 (83%) Frame = -1 Query: 345 DXVATANVLKSSXPVVXGKQYYSITVLTRTADGDXGGKHQLITATVADGKLYVCKAQAGX 166 D VATAN+L+++ V GK YY ++VLTRTADGD GGKHQLITATV DGKLY+CKAQAG Sbjct: 183 DAVATANILEATASNVNGKDYYFVSVLTRTADGDEGGKHQLITATVNDGKLYICKAQAGD 242 Query: 165 KRWFKGAXKFVENAAGSFSVA 103 KRWFKGA KFVE AA SFSVA Sbjct: 243 KRWFKGARKFVEGAASSFSVA 263
>PSBP_LYCES (P29795) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 258 Score = 125 bits (314), Expect = 3e-29 Identities = 60/79 (75%), Positives = 68/79 (86%) Frame = -1 Query: 339 VATANVLKSSXPVVXGKQYYSITVLTRTADGDXGGKHQLITATVADGKLYVCKAQAGXKR 160 VAT N+L++S V GK+YY ++VLTRTADGD GGKHQLITATV DGKLY+CKAQAG KR Sbjct: 180 VATRNLLEASSATVGGKEYYYLSVLTRTADGDEGGKHQLITATVNDGKLYICKAQAGDKR 239 Query: 159 WFKGAXKFVENAAGSFSVA 103 WFKGA KFVENAA SFS+A Sbjct: 240 WFKGAKKFVENAATSFSIA 258
>PSBP2_ARATH (O49344) Oxygen-evolving enhancer protein 2-2, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 265 Score = 125 bits (313), Expect = 3e-29 Identities = 60/81 (74%), Positives = 69/81 (85%) Frame = -1 Query: 345 DXVATANVLKSSXPVVXGKQYYSITVLTRTADGDXGGKHQLITATVADGKLYVCKAQAGX 166 + VATAN+L++S + GK+YY ++VLTRTADGD GGKHQLITATV GKLY+CKAQAG Sbjct: 185 NAVATANILETSTQEIGGKEYYYLSVLTRTADGDEGGKHQLITATVNGGKLYICKAQAGD 244 Query: 165 KRWFKGAXKFVENAAGSFSVA 103 KRWFKGA KFVENAA SFSVA Sbjct: 245 KRWFKGARKFVENAATSFSVA 265
>PSBP3_TOBAC (Q04127) Oxygen-evolving enhancer protein 2-3, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane) Length = 266 Score = 124 bits (310), Expect = 8e-29 Identities = 59/81 (72%), Positives = 68/81 (83%) Frame = -1 Query: 345 DXVATANVLKSSXPVVXGKQYYSITVLTRTADGDXGGKHQLITATVADGKLYVCKAQAGX 166 D VA ANVL++S V GKQYY +++LTRTADG+ GGKHQL+TATV DGKLY+CKAQAG Sbjct: 186 DAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVNDGKLYICKAQAGD 245 Query: 165 KRWFKGAXKFVENAAGSFSVA 103 KRWFKGA KFVEN A SFS+A Sbjct: 246 KRWFKGAKKFVENTATSFSLA 266
>PSBP1_ARATH (Q42029) Oxygen-evolving enhancer protein 2-1, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 263 Score = 123 bits (309), Expect = 1e-28 Identities = 61/81 (75%), Positives = 68/81 (83%) Frame = -1 Query: 345 DXVATANVLKSSXPVVXGKQYYSITVLTRTADGDXGGKHQLITATVADGKLYVCKAQAGX 166 + VATAN+L+SS V GK YY ++VLTRTADGD GGKHQLITATV GKLY+CKAQAG Sbjct: 183 NAVATANILESSSQEVGGKPYYYLSVLTRTADGDEGGKHQLITATVNGGKLYICKAQAGD 242 Query: 165 KRWFKGAXKFVENAAGSFSVA 103 KRWFKGA KFVE+AA SFSVA Sbjct: 243 KRWFKGARKFVESAATSFSVA 263
>PSBP1_TOBAC (Q7DM39) Oxygen-evolving enhancer protein 2-1, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane) Length = 268 Score = 123 bits (309), Expect = 1e-28 Identities = 60/79 (75%), Positives = 68/79 (86%) Frame = -1 Query: 339 VATANVLKSSXPVVXGKQYYSITVLTRTADGDXGGKHQLITATVADGKLYVCKAQAGXKR 160 VATAN+L++S V GK+YY ++VLTRTADGD GGKHQLI+ATV GKLY+CKAQAG KR Sbjct: 190 VATANLLETSSSTVGGKEYYILSVLTRTADGDEGGKHQLISATVNGGKLYICKAQAGDKR 249 Query: 159 WFKGAXKFVENAAGSFSVA 103 WFKGA KFVENAA SFSVA Sbjct: 250 WFKGARKFVENAATSFSVA 268
>PSBP2_TOBAC (P18212) Oxygen-evolving enhancer protein 2-2, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane) Length = 265 Score = 122 bits (306), Expect = 2e-28 Identities = 60/81 (74%), Positives = 67/81 (82%) Frame = -1 Query: 345 DXVATANVLKSSXPVVXGKQYYSITVLTRTADGDXGGKHQLITATVADGKLYVCKAQAGX 166 D VA ANVL++S V GK YY ++VLTRTADG+ GGKHQLITATV DGKLY+CKAQAG Sbjct: 185 DAVAIANVLETSSAEVGGKPYYYLSVLTRTADGNEGGKHQLITATVNDGKLYICKAQAGD 244 Query: 165 KRWFKGAXKFVENAAGSFSVA 103 KRWFKGA KFVEN A SFS+A Sbjct: 245 KRWFKGAKKFVENTATSFSLA 265
>PSBP_SINAL (P11594) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 260 Score = 120 bits (300), Expect = 1e-27 Identities = 59/81 (72%), Positives = 67/81 (82%) Frame = -1 Query: 345 DXVATANVLKSSXPVVXGKQYYSITVLTRTADGDXGGKHQLITATVADGKLYVCKAQAGX 166 + VATAN+L+++ V GK YY ++VLTRTADGD GGKHQLITATV GKLY+CKAQAG Sbjct: 180 NAVATANILETNIQDVGGKPYYYLSVLTRTADGDEGGKHQLITATVNGGKLYICKAQAGD 239 Query: 165 KRWFKGAXKFVENAAGSFSVA 103 KRWFKGA KFVE AA SFSVA Sbjct: 240 KRWFKGANKFVEKAATSFSVA 260
>PSBP_BRAJU (Q96334) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) (Fragment) Length = 217 Score = 117 bits (292), Expect = 9e-27 Identities = 58/81 (71%), Positives = 66/81 (81%) Frame = -1 Query: 345 DXVATANVLKSSXPVVXGKQYYSITVLTRTADGDXGGKHQLITATVADGKLYVCKAQAGX 166 + VATAN+L+++ V GK YY ++VLTRTAD D GGKHQLITATV GKLY+CKAQAG Sbjct: 137 NAVATANILETNIQDVGGKPYYYLSVLTRTADEDEGGKHQLITATVNGGKLYICKAQAGD 196 Query: 165 KRWFKGAXKFVENAAGSFSVA 103 KRWFKGA KFVE AA SFSVA Sbjct: 197 KRWFKGANKFVEKAATSFSVA 217
>PSBP_CHLRE (P11471) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) Length = 245 Score = 75.1 bits (183), Expect = 4e-14 Identities = 38/64 (59%), Positives = 44/64 (68%), Gaps = 1/64 (1%) Frame = -1 Query: 294 GKQYYSITVLTRTADGDXGGKHQLITATV-ADGKLYVCKAQAGXKRWFKGAXKFVENAAG 118 GK YY +L R+ADGD GG+HQLI ATV +D KLY+ K Q G KRWFKGA K A Sbjct: 181 GKTYYKYELLVRSADGDEGGRHQLIGATVGSDNKLYIIKIQIGDKRWFKGAKKEAMGAFD 240 Query: 117 SFSV 106 SF+V Sbjct: 241 SFTV 244
>MTP_PIG (Q865F1) Microsomal triglyceride transfer protein large subunit| precursor Length = 894 Score = 27.7 bits (60), Expect = 7.3 Identities = 17/43 (39%), Positives = 22/43 (51%) Frame = -1 Query: 276 ITVLTRTADGDXGGKHQLITATVADGKLYVCKAQAGXKRWFKG 148 + +L R+ DGD QLI T+ D K+ Q G K FKG Sbjct: 65 VVLLWRSPDGDDD---QLIQITIKDVKVENVNQQRGEKSIFKG 104
>TL30_ARATH (O49292) Thylakoid lumenal 29.8 kDa protein, chloroplast precursor| Length = 274 Score = 27.7 bits (60), Expect = 7.3 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 8/83 (9%) Frame = -1 Query: 330 ANVLKSSXPVVXGKQYYSITVLTRTADGDXG--------GKHQLITATVADGKLYVCKAQ 175 A V+ + P V G+ + + A+ D H LITAT A +LY+ Sbjct: 192 AKVINAFGPEVIGENVEGKVLSSNVAEHDGRLYYQFELEPPHVLITATAAGNRLYLFSVT 251 Query: 174 AGXKRWFKGAXKFVENAAGSFSV 106 +W K K ++ A SF + Sbjct: 252 GNGLQW-KRHYKDLKRIASSFRI 273 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,601,865 Number of Sequences: 219361 Number of extensions: 412768 Number of successful extensions: 745 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 735 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 743 length of database: 80,573,946 effective HSP length: 90 effective length of database: 60,831,456 effective search space used: 1459954944 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
