ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags37f10 |
|---|---|
| Clone Library Name | barley_pub |
>S23A2_MOUSE (Q9EPR4) Solute carrier family 23 member 2 (Sodium-dependent| vitamin C transporter 2) (mSVCT2) (Na(+)/L-ascorbic acid transporter 2) (Yolk sac permease-like molecule 2) Length = 647 Score = 63.2 bits (152), Expect = 5e-10 Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 1/115 (0%) Frame = -1 Query: 566 LSFLQFTNMNSMRNLFIVGFSLFLGLSIPEYFSQYMTGVQNGPAHTKAGWFNDYINTIFA 387 LS LQF ++NS RNLF++GFS+F GL +P Y Q P T + +N + Sbjct: 500 LSNLQFIDLNSSRNLFVLGFSIFFGLVLPSYLRQ-------NPLVTGITGIDQILNVLLT 552 Query: 386 SPPTVALIIAVVLDNTXDVRDAAKDRGMQWWERFRTFRGDSRN-EEFYTLPFNLN 225 + V +A +LDNT + ++RG++ W++ + S + E Y LPF +N Sbjct: 553 TAMFVGGCVAFILDNT--IPGTPEERGIKKWKKGVSKGSKSLDGMESYNLPFGMN 605
>S23A2_RAT (Q9WTW8) Solute carrier family 23 member 2 (Sodium-dependent| vitamin C transporter 2) (Na(+)/L-ascorbic acid transporter 2) Length = 592 Score = 63.2 bits (152), Expect = 5e-10 Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 1/115 (0%) Frame = -1 Query: 566 LSFLQFTNMNSMRNLFIVGFSLFLGLSIPEYFSQYMTGVQNGPAHTKAGWFNDYINTIFA 387 LS LQF ++NS RNLF++GFS+F GL +P Y Q P T + +N + Sbjct: 445 LSNLQFIDLNSSRNLFVLGFSIFFGLVLPSYLRQ-------NPLVTGITGIDQVLNVLLT 497 Query: 386 SPPTVALIIAVVLDNTXDVRDAAKDRGMQWWERFRTFRGDSRN-EEFYTLPFNLN 225 + V +A +LDNT + ++RG++ W++ + S + E Y LPF +N Sbjct: 498 TAMFVGGCVAFILDNT--IPGTPEERGIKKWKKGVSKGNKSLDGMESYNLPFGMN 550
>S23A2_HUMAN (Q9UGH3) Solute carrier family 23 member 2 (Sodium-dependent| vitamin C transporter 2) (hSVCT2) (Na(+)/L-ascorbic acid transporter 2) (Yolk sac permease-like molecule 2) (Nucleobase transporter-like 1 protein) Length = 650 Score = 62.8 bits (151), Expect = 7e-10 Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 2/116 (1%) Frame = -1 Query: 566 LSFLQFTNMNSMRNLFIVGFSLFLGLSIPEYFSQYMTGVQNGPAHTKAGWFNDYINTIFA 387 LS LQF ++NS RNLF++GFS+F GL +P Y Q P T + +N + Sbjct: 503 LSNLQFIDLNSSRNLFVLGFSIFFGLVLPSYLRQ-------NPLVTGITGIDQVLNVLLT 555 Query: 386 SPPTVALIIAVVLDNTXDVRDAAKDRGMQWWERFRTFRGDSRNE--EFYTLPFNLN 225 + V +A +LDNT + ++RG++ W++ +G+ + E Y LPF +N Sbjct: 556 TAMFVGGCVAFILDNT--IPGTPEERGIRKWKK-GVGKGNKSLDGMESYNLPFGMN 608
>S23A1_MOUSE (Q9Z2J0) Solute carrier family 23 member 1 (Sodium-dependent| vitamin C transporter 1) (Na(+)/L-ascorbic acid transporter 1) (Yolk sac permease-like molecule 3) Length = 605 Score = 57.0 bits (136), Expect = 4e-08 Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 1/114 (0%) Frame = -1 Query: 566 LSFLQFTNMNSMRNLFIVGFSLFLGLSIPEYFSQYMTGVQNGPAHTKAGWFNDYINTIFA 387 LS LQF +MNS RNLF++GFS+F GL++P Y G +T + + + Sbjct: 451 LSNLQFVDMNSSRNLFVLGFSMFFGLTLPNYLDS-----NPGAINTGIPEVDQILTVLLT 505 Query: 386 SPPTVALIIAVVLDNTXDVRDAAKDRGM-QWWERFRTFRGDSRNEEFYTLPFNL 228 + V +A +LDNT V + ++RG+ QW S + + Y PF + Sbjct: 506 TEMFVGGCLAFILDNT--VPGSPEERGLIQWKAGAHANSETSASLKSYDFPFGM 557
>S23A1_RAT (Q9WTW7) Solute carrier family 23 member 1 (Sodium-dependent| vitamin C transporter 1) (Na(+)/L-ascorbic acid transporter 1) Length = 604 Score = 56.2 bits (134), Expect = 6e-08 Identities = 32/92 (34%), Positives = 50/92 (54%) Frame = -1 Query: 566 LSFLQFTNMNSMRNLFIVGFSLFLGLSIPEYFSQYMTGVQNGPAHTKAGWFNDYINTIFA 387 LS LQF +MNS RNLF++GFS+F GL++P Y G +T + + + Sbjct: 451 LSNLQFVDMNSSRNLFVLGFSMFFGLTLPNYLDS-----NPGAINTGVPEVDQILTVLLT 505 Query: 386 SPPTVALIIAVVLDNTXDVRDAAKDRGMQWWE 291 + V +A +LDNT V + ++RG+ W+ Sbjct: 506 TEMFVGGCLAFILDNT--VPGSPEERGLIQWK 535
>S23A1_HUMAN (Q9UHI7) Solute carrier family 23 member 1 (Sodium-dependent| vitamin C transporter 1) (hSVCT1) (Na(+)/L-ascorbic acid transporter 1) (Yolk sac permease-like molecule 3) Length = 598 Score = 54.7 bits (130), Expect = 2e-07 Identities = 31/92 (33%), Positives = 49/92 (53%) Frame = -1 Query: 566 LSFLQFTNMNSMRNLFIVGFSLFLGLSIPEYFSQYMTGVQNGPAHTKAGWFNDYINTIFA 387 LS LQF +MNS RNLF++GFS+F GL++P Y + G + + + Sbjct: 444 LSNLQFVDMNSSRNLFVLGFSMFFGLTLPNYLESNPGAINTGILEV-----DQILIVLLT 498 Query: 386 SPPTVALIIAVVLDNTXDVRDAAKDRGMQWWE 291 + V +A +LDNT V + ++RG+ W+ Sbjct: 499 TEMFVGGCLAFILDNT--VPGSPEERGLIQWK 528
>ATP6_HELPY (P56085) ATP synthase a chain (EC 3.6.3.14) (ATPase protein 6)| Length = 226 Score = 30.0 bits (66), Expect = 4.8 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +1 Query: 49 IPPSFAIETASWSYRLYFSSPLLLYQKHAMLRRKGFFIWYS 171 I P F TASWS+ L + + Y +R +GFF +++ Sbjct: 95 IIPGFESPTASWSFTLVLALIVFFYYHFEGIRVQGFFKYFA 135
>ATP6_HELPJ (Q9ZL15) ATP synthase a chain (EC 3.6.3.14) (ATPase protein 6)| Length = 226 Score = 30.0 bits (66), Expect = 4.8 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +1 Query: 49 IPPSFAIETASWSYRLYFSSPLLLYQKHAMLRRKGFFIWYS 171 I P F TASWS+ L + + Y +R +GFF +++ Sbjct: 95 IIPGFESPTASWSFTLVLALIVFFYYHFEGIRVQGFFKYFA 135
>GLIS1_HUMAN (Q8NBF1) Zinc finger protein GLIS1 (GLI-similar 1)| Length = 620 Score = 30.0 bits (66), Expect = 4.8 Identities = 11/23 (47%), Positives = 16/23 (69%) Frame = +2 Query: 251 TLRSCCPLGMSGTAPTIASPCPS 319 +L+ CC LG+ T+P +SPC S Sbjct: 61 SLKRCCVLGLPPTSPASSSPCAS 83 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,655,660 Number of Sequences: 219361 Number of extensions: 1589082 Number of successful extensions: 4870 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 4715 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4869 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4700377760 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
