ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags37e24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BIRC6_HUMAN (Q9NR09) Baculoviral IAP repeat-containing protein 6... 51 3e-06
2T2R64_PANPA (Q5Y4Y9) Taste receptor type 2 member 64 (T2R64) 31 3.7
3MATK_THUOC (Q9MSS3) Maturase K (Intron maturase) 31 3.7
4MCRC_METTM (P11566) Methyl-coenzyme M reductase I operon protein C 30 6.3
5TPIS_BLOFL (Q7VRL0) Triosephosphate isomerase (EC 5.3.1.1) (TIM)... 30 6.3
6MATK_THUPL (Q9MSS1) Maturase K (Intron maturase) 30 8.2

>BIRC6_HUMAN (Q9NR09) Baculoviral IAP repeat-containing protein 6|
            (Ubiquitin-conjugating BIR-domain enzyme apollon)
          Length = 4829

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
 Frame = -1

Query: 649  EVWDPXXXXXXXXXXXXXXXXLNEKPYFNEAGYEKQVGTVEGEKNALPYNENTYLLSVK- 473
            E W+P                L  +PYFNE GYE+  GT  G +++  Y+ N    +VK 
Sbjct: 4651 EKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQATVKW 4710

Query: 472  SMLYILRRPPMNFEDFVKSHFCKRGHYILKACEAYL 365
            +ML  +R P   F++ +  HF  +   I+  CE ++
Sbjct: 4711 AMLEQIRNPSPCFKEVIHKHFYLKRVEIMAQCEEWI 4746



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>T2R64_PANPA (Q5Y4Y9) Taste receptor type 2 member 64 (T2R64)|
          Length = 309

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 34/145 (23%), Positives = 62/145 (42%), Gaps = 18/145 (12%)
 Frame = -1

Query: 568 FNEAGYEKQVGTVEGEKNALPYNENTYLLSVKSMLYILRRPPMNFEDFVKSHFCKRGHYI 389
           FN A Y  +VG V    +A+  + + +L +   + Y+L+    NF + +  H  KR   I
Sbjct: 71  FNSALYSSEVGAVASNISAIINHFSIWLAASLGIFYLLK--IANFSNLIFLHLKKR---I 125

Query: 388 LKACEAYLQGAVVGKLNDDACPTDS----NKEYSCSMGFKL--------------ALGKI 263
                  L G +V  + + A  T       KEY  ++ +K+               L  +
Sbjct: 126 RSVVLVILLGPLVFLICNLAVITMDERVWTKEYEGNVTWKIKLRNAIHLSDLTVSTLANL 185

Query: 262 LPRLITALKDIGADCSQYEHLGKTE 188
           +P ++T +  +   CS ++HL K +
Sbjct: 186 IPFILTLICFLLLICSLHKHLKKMQ 210



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>MATK_THUOC (Q9MSS3) Maturase K (Intron maturase)|
          Length = 509

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 21/77 (27%), Positives = 37/77 (48%)
 Frame = +2

Query: 20  WFSFGTRFPNVQIIKQQMLNVHLYGNSRRFSLIMFSEPKRSFEYNPQARCSAFLSGFGLP 199
           +FSF T   +++ I++Q  ++ L+GNS    LI         EYN      + L GF + 
Sbjct: 53  FFSFLTVKRSIRRIRKQNKSISLFGNSDSNKLI---------EYNKNFSFKSMLEGFTIV 103

Query: 200 EVLVLAAVCSYVLQGCD 250
             + +A    + ++G D
Sbjct: 104 LEVSIAMTSKHFIKGMD 120



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>MCRC_METTM (P11566) Methyl-coenzyme M reductase I operon protein C|
          Length = 198

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
 Frame = -1

Query: 526 GEKNALPYNENTYLLSVKSMLYILRRPPMNFEDFVKSHFCKRGHYILKACEAYLQGAVV- 350
           G KN + Y     L +V     ++   P++FEDF K     R   ++   E   +G +V 
Sbjct: 112 GVKNHITYKARLILRNVDRPCIVICEYPVDFEDFAKIGVKTR---VVMPDEPKTKGTIVD 168

Query: 349 ---GKLNDDACPTDSNKEYSCSMGFKLALG 269
              G +  + CP +   E    +  KLALG
Sbjct: 169 IVSGVIRGETCPQEKLDEIIRKV--KLALG 196



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>TPIS_BLOFL (Q7VRL0) Triosephosphate isomerase (EC 5.3.1.1) (TIM)|
           (Triose-phosphate isomerase)
          Length = 262

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
 Frame = -1

Query: 532 VEGEKNALP---YNENTYLLSVKSMLYILRRPPMNFEDFVKSHFCKRGHYILKAC----E 374
           + G KN +     N  T L ++   + I   PP+ + D VK+H     +  ++ C    +
Sbjct: 12  LNGNKNTITNSLINLTTQLTNIPQYIKIAIAPPILYIDMVKNHLTSYNNKTIELCSQNVD 71

Query: 373 AYLQGAVVGKLN 338
            +L GA  G ++
Sbjct: 72  IHLSGAFTGDIS 83



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>MATK_THUPL (Q9MSS1) Maturase K (Intron maturase)|
          Length = 510

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 21/77 (27%), Positives = 37/77 (48%)
 Frame = +2

Query: 20  WFSFGTRFPNVQIIKQQMLNVHLYGNSRRFSLIMFSEPKRSFEYNPQARCSAFLSGFGLP 199
           +FSF T   +++ I++Q  ++ L+GNS    LI         EYN      + L GF + 
Sbjct: 53  FFSFLTVKRSIRRIRKQNKSISLFGNSDSNKLI---------EYNKNFSFKSMLEGFTIV 103

Query: 200 EVLVLAAVCSYVLQGCD 250
             + +A    + ++G D
Sbjct: 104 LEVSIAMRSKHFIKGMD 120


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,693,312
Number of Sequences: 219361
Number of extensions: 2016616
Number of successful extensions: 4894
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4891
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6200242422
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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